CF503816

Overview
NameCF503816
Unique NameCF503816
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length291
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1066 contig Csv1_Contig1066:365..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_RABIT (Glyceraldehyde-3-phosphate dehydrogenase OS=Oryctolagus cuniculus GN=GAPDH PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 1.689e-18
Identity = 43/88 (48.86%), Postives = 60/88 (68.18%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            VK+G+NGFGRIGRLV R       V++VA+NDPFI   YM YMF+YDS HG++ H  +K ++ K ++ G K +T+F  R+P  I W +
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDVVAINDPFIDLHYMVYMFQYDSTHGKF-HGTVKAENGKLVING-KAITIFQERDPANIKWGD 87          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_PHANO (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeosphaeria nodorum GN=GPD1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.689e-18
Identity = 45/88 (51.14%), Postives = 62/88 (70.45%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            VK+GINGFGRIGR+V R  ++ +DVE+VAVNDPFI   Y  YM KYDS HGQ+K  ++KV+ +   + G K +  +  ++P  IPW+E
Sbjct:    3 VKVGINGFGRIGRIVFRNAIEHNDVEIVAVNDPFIEPHYAAYMLKYDSQHGQFK-GDIKVEGNDLTING-KTIRFYTEKDPANIPWSE 88          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.689e-18
Identity = 47/88 (53.41%), Postives = 59/88 (67.05%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            VK+GINGFGRIGR+V R  ++ +DVE+VAVNDPFI   Y  YM KYDS HGQ+K  ++KV D   L    K V     ++P  IPW+E
Sbjct:    3 VKVGINGFGRIGRIVFRNAIEHNDVEIVAVNDPFIEPHYAAYMLKYDSTHGQFK-GDIKV-DGNNLTVNGKTVRFHMEKDPANIPWSE 88          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3PT_DANRE (Glyceraldehyde 3-phosphate dehydrogenase, testis-specific OS=Danio rerio GN=gapdhs PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.689e-18
Identity = 45/91 (49.45%), Postives = 64/91 (70.33%), Query Frame = 1
Query:   19 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            M ++ +GINGFGRIGRLV R  LQ+  +++ A+NDPFI   YM YMFKYDS HG++K  E+ ++D K ++ G+  ++VF    P EIPW +
Sbjct:    1 MSELCVGINGFGRIGRLVLRACLQKG-IKVTAINDPFIDLQYMVYMFKYDSTHGRYK-GEVHMEDGKLIVDGQ-AISVFQCMKPAEIPWGD 88          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P1_GLORO (Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragment) OS=Globodera rostochiensis GN=GPD-1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.689e-18
Identity = 47/97 (48.45%), Postives = 61/97 (62.89%), Query Frame = 1
Query:   19 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEK------PVTVFGVRNPEEIPWAE 291
            M K K+GINGFGRIGRL  R  +++D V++VA+NDPFI  DYM YMF YDS HG++     K+      L  EK       + VF +++P EI WAE
Sbjct:    1 MVKPKVGINGFGRIGRLALRAAVEKDTVQVVAINDPFIELDYMVYMFNYDSTHGRFNG---KISTSAGNLVVEKEGKATHTIKVFNLKDPAEIKWAE 94          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_SPECI (Glyceraldehyde-3-phosphate dehydrogenase OS=Spermophilus citellus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 2.205e-18
Identity = 42/88 (47.73%), Postives = 61/88 (69.32%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            VK+G+NGFGRIGRLV R       V++VA+NDPFI  +YM YMF+YDS HG++ H  +K ++ K ++ G K +++F  R+P  I W +
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-HGTVKAENGKLVING-KSISIFQERDPANIKWGD 87          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_MUSPF (Glyceraldehyde-3-phosphate dehydrogenase OS=Mustela putorius furo GN=GAPDH PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.205e-18
Identity = 42/88 (47.73%), Postives = 61/88 (69.32%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            VK+G+NGFGRIGRLV R       V++VA+NDPFI  +YM YMF+YDS HG++ H  +K ++ K ++ G K +++F  R+P  I W +
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-HGTVKAENGKLVING-KSISIFQERDPANIKWGD 87          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_CANFA (Glyceraldehyde-3-phosphate dehydrogenase OS=Canis familiaris GN=GAPDH PE=2 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 2.205e-18
Identity = 42/88 (47.73%), Postives = 61/88 (69.32%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            VK+G+NGFGRIGRLV R       V++VA+NDPFI  +YM YMF+YDS HG++ H  +K ++ K ++ G K +++F  R+P  I W +
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKF-HGTVKAENGKLVING-KSISIFQERDPANIKWGD 87          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P3_CAEBR (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis briggsae GN=gpd-3 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.205e-18
Identity = 47/96 (48.96%), Postives = 63/96 (65.62%), Query Frame = 1
Query:   19 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWK---HHE----LKVKDDKTLLFGEKPVTVFGVRNPEEIPW 285
            M K  +GINGFGRIGRLV R  +++D V +VAVNDPFI+ DYM Y+F+YDS HG++K    HE    L  K+ K+    +  + V+  R+P EI W
Sbjct:    1 MSKPSVGINGFGRIGRLVLRAAVEKDSVNVVAVNDPFISIDYMVYLFQYDSTHGRFKGTVAHEGDYLLVAKEGKS----QHKIKVYNSRDPAEIQW 92          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_COLLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Columba livia GN=GAPDH PE=2 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 2.880e-18
Identity = 43/88 (48.86%), Postives = 61/88 (69.32%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            VK+G+NGFGRIGRLV R  +    V++VA+NDPFI  +YM YMFKYDS HG ++   +K ++ K ++ G   +T+F  R+P  I WA+
Sbjct:    2 VKVGVNGFGRIGRLVTRAAILSAKVQVVAINDPFIDLNYMVYMFKYDSTHGHFR-GTVKAENGKLVING-NAITIFQERDPSNIKWAD 87          
The following BLAST results are available for this feature:
BLAST of CF503816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 182
Match NameE-valueIdentityDescription
G3P_RABIT1.689e-1848.86Glyceraldehyde-3-phosphate dehydrogenase OS=Orycto... [more]
G3P_PHANO1.689e-1851.14Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeos... [more]
G3P_CURLU1.689e-1853.41Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]
G3PT_DANRE1.689e-1849.45Glyceraldehyde 3-phosphate dehydrogenase, testis-s... [more]
G3P1_GLORO1.689e-1848.45Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragme... [more]
G3P_SPECI2.205e-1847.73Glyceraldehyde-3-phosphate dehydrogenase OS=Spermo... [more]
G3P_MUSPF2.205e-1847.73Glyceraldehyde-3-phosphate dehydrogenase OS=Mustel... [more]
G3P_CANFA2.205e-1847.73Glyceraldehyde-3-phosphate dehydrogenase OS=Canis ... [more]
G3P3_CAEBR2.205e-1848.96Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P_COLLI2.880e-1848.86Glyceraldehyde-3-phosphate dehydrogenase OS=Columb... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-303 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503816 ID=CF503816; Name=CF503816; organism=Citrus sinensis; type=EST; length=291bp
CCTCGTGCCGCGAGAATCATGGGGAAGGTCAAGATCGGAATCAACGGATT
CGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGGACGATG
TTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTACATGACA
TACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCATGAATT
GAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGTCACTG
TTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAG
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