CF503857

Overview
NameCF503857
Unique NameCF503857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length328
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB2_XENLA (Tubulin beta-2 chain OS=Xenopus laevis GN=tubb2 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.667e-50
Identity = 88/107 (82.24%), Postives = 99/107 (92.52%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+H+Q GQCGNQIG+KFWEVI DEHG+DPTG Y GD   DLQLERINVYYNEA+G ++VPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDS--DLQLERINVYYNEATGNKFVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_TRYCR (Tubulin beta chain OS=Trypanosoma cruzi PE=3 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 2.177e-50
Identity = 90/107 (84.11%), Postives = 100/107 (93.46%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+ +Q GQCGNQIGSKFWEVI DEHGVDPTG Y+GD   DLQLERINVY++EA+GGRYVPRAVL+DLEPGTMDS+R+GPYGQIFRPDNF+FGQSGAGNNWAKGH
Sbjct:    1 MREIVCVQAGQCGNQIGSKFWEVISDEHGVDPTGTYQGDS--DLQLERINVYFDEATGGRYVPRAVLIDLEPGTMDSVRAGPYGQIFRPDNFIFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_LEIME (Tubulin beta chain OS=Leishmania mexicana PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 2.843e-50
Identity = 89/107 (83.18%), Postives = 99/107 (92.52%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+  Q GQCGNQIGSKFWEVI DEHGVDPTG Y+GD   DLQLERINVY++E++GGRYVPRAVLMDLEPGTMDS+R+GPYGQ+FRPDNF+FGQSGAGNNWAKGH
Sbjct:    1 MREIVSCQAGQCGNQIGSKFWEVIADEHGVDPTGSYQGDS--DLQLERINVYFDESAGGRYVPRAVLMDLEPGTMDSVRAGPYGQLFRPDNFIFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_PSEAM (Tubulin beta chain OS=Pseudopleuronectes americanus PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 3.713e-50
Identity = 89/107 (83.18%), Postives = 99/107 (92.52%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREILH+Q GQCGNQIG+KFWEVI DEHG+DP+G Y GD   +LQLERINVYYNEA+GG+YVPRAVL+DLEPGTMDS+RSG +GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREILHLQAGQCGNQIGAKFWEVISDEHGIDPSGTYHGDN--ELQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGAFGQIFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB4_MAIZE (Tubulin beta-4 chain OS=Zea mays GN=TUBB4 PE=2 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 3.713e-50
Identity = 89/107 (83.18%), Postives = 97/107 (90.65%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREILHIQGGQCGNQIG+KFWEVIC EH VD TG+Y G   + L+LERINVYYNEA GGRYVPRAVLMDLEPGTM+SIR+GP+G IFRPDNFV+GQSGAGNNWAKGH
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICGEHCVDSTGRYSGTSSQQLELERINVYYNEAGGGRYVPRAVLMDLEPGTMESIRAGPFGGIFRPDNFVYGQSGAGNNWAKGH 107
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_TRYBR (Tubulin beta chain OS=Trypanosoma brucei rhodesiense PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 4.849e-50
Identity = 89/107 (83.18%), Postives = 100/107 (93.46%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+ +Q GQCGNQIGSKFWEVI DEHGVDPTG Y+GD   DLQLERINVY++EA+GGRYVPR+VL+DLEPGTMDS+R+GPYGQIFRPDNF+FGQSGAGNNWAKGH
Sbjct:    1 MREIVCVQAGQCGNQIGSKFWEVISDEHGVDPTGTYQGDS--DLQLERINVYFDEATGGRYVPRSVLIDLEPGTMDSVRAGPYGQIFRPDNFIFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_ACHKL (Tubulin beta chain OS=Achlya klebsiana PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 4.849e-50
Identity = 90/107 (84.11%), Postives = 99/107 (92.52%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE++HIQGGQCGNQIG+KFWEVI DEHGVDPTG Y GD   DLQLERINVYYNEA+G  YVPRA+LMDLEPGTMDS+R+GPYGQ+FRPDNFVFGQ+GAGNNWAKGH
Sbjct:    1 MRELVHIQGGQCGNQIGAKFWEVISDEHGVDPTGSYHGDS--DLQLERINVYYNEATG-TYVPRAILMDLEPGTMDSVRAGPYGQLFRPDNFVFGQTGAGNNWAKGH 104
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB8_ORYSJ (Tubulin beta-8 chain OS=Oryza sativa subsp. japonica GN=TUBB8 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 4.849e-50
Identity = 92/107 (85.98%), Postives = 97/107 (90.65%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREILHIQGGQCGNQIG+KFWEVIC EHGVDPTG Y G   +  QLERINVY+NEASGGR+VPRAVLMDLEPGTMDS+RSGP G IFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICGEHGVDPTGTYTGTSPQ--QLERINVYFNEASGGRHVPRAVLMDLEPGTMDSLRSGPIGGIFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB1_SOYBN (Tubulin beta-1 chain OS=Glycine max GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 4.849e-50
Identity = 89/107 (83.18%), Postives = 98/107 (91.59%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREILH+Q GQCGNQIG KFWEV+CDEHG+D TG Y G+    LQLER+NVYYNEASGGRYVPRAVLMDLEPGTMDS+RSGP+G+IFRPDNFVFGQ+GAGNNWAKGH
Sbjct:    1 MREILHVQAGQCGNQIGGKFWEVMCDEHGIDATGNYVGNF--HLQLERVNVYYNEASGGRYVPRAVLMDLEPGTMDSLRSGPFGKIFRPDNFVFGQNGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB1_MAIZE (Tubulin beta-1 chain OS=Zea mays GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 4.849e-50
Identity = 91/107 (85.05%), Postives = 98/107 (91.59%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREILHIQGGQCGNQIG+KFWEV+C EHG+D TG+Y GD   DLQLER+NVYYNEAS GR+VPRAVLMDLEPGTMDS+RSGPYG IFRPDNFVFGQSGAGNN AKGH
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYGGDS--DLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGHIFRPDNFVFGQSGAGNNSAKGH 105
The following BLAST results are available for this feature:
BLAST of CF503857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 402
Match NameE-valueIdentityDescription
TBB2_XENLA1.667e-5082.24Tubulin beta-2 chain OS=Xenopus laevis GN=tubb2 PE... [more]
TBB_TRYCR2.177e-5084.11Tubulin beta chain OS=Trypanosoma cruzi PE=3 SV=2[more]
TBB_LEIME2.843e-5083.18Tubulin beta chain OS=Leishmania mexicana PE=3 SV=... [more]
TBB_PSEAM3.713e-5083.18Tubulin beta chain OS=Pseudopleuronectes americanu... [more]
TBB4_MAIZE3.713e-5083.18Tubulin beta-4 chain OS=Zea mays GN=TUBB4 PE=2 SV=... [more]
TBB_TRYBR4.849e-5083.18Tubulin beta chain OS=Trypanosoma brucei rhodesien... [more]
TBB_ACHKL4.849e-5084.11Tubulin beta chain OS=Achlya klebsiana PE=2 SV=1[more]
TBB8_ORYSJ4.849e-5085.98Tubulin beta-8 chain OS=Oryza sativa subsp. japoni... [more]
TBB1_SOYBN4.849e-5083.18Tubulin beta-1 chain OS=Glycine max GN=TUBB1 PE=3 ... [more]
TBB1_MAIZE4.849e-5085.05Tubulin beta-1 chain OS=Zea mays GN=TUBB1 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-344 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503857 ID=CF503857; Name=CF503857; organism=Citrus sinensis; type=EST; length=328bp
GATAAATGAGAGAGATCTTGCACATTCAAGGAGGCCAATGCGGCAACCAA
ATCGGCTCCAAATTCTGGGAAGTCATTTGCGACGAGCATGGCGTGGACCC
CACGGGGAAGTATAGAGGTGACGGCGTTGAGGATCTTCAACTGGAGCGAA
TCAATGTCTATTACAACGAAGCTTCCGGTGGAAGGTACGTGCCTCGAGCT
GTTCTCATGGATCTTGAACCCGGTACCATGGATAGTATCAGATCCGGCCC
GTACGGCCAGATCTTTCGACCTGATAACTTCGTTTTTGGACAATCCGGTG
CGGGCAATAACTGGGCCAAAGGTCATTA
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