CF503857
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB3_RAT (Tubulin beta-3 chain OS=Rattus norvegicus GN=Tubb3 PE=1 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 2.252e-47 Identity = 84/107 (78.50%), Postives = 96/107 (89.72%), Query Frame = 3 Query: 6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326 MREI+HIQ GQCGNQIG+KFWEVI DEHG+DP+G Y GD DLQLERI+VYYNEAS +YVPRA+L+DLEPGTMDS+RSG +G +FRPDNF+FGQSGAGNNWAKGH Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDS--DLQLERISVYYNEASSHKYVPRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGH 105
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB3_MOUSE (Tubulin beta-3 chain OS=Mus musculus GN=Tubb3 PE=1 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 2.252e-47 Identity = 84/107 (78.50%), Postives = 96/107 (89.72%), Query Frame = 3 Query: 6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326 MREI+HIQ GQCGNQIG+KFWEVI DEHG+DP+G Y GD DLQLERI+VYYNEAS +YVPRA+L+DLEPGTMDS+RSG +G +FRPDNF+FGQSGAGNNWAKGH Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDS--DLQLERISVYYNEASSHKYVPRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGH 105
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB3_MACFA (Tubulin beta-3 chain OS=Macaca fascicularis GN=TUBB3 PE=2 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 2.252e-47 Identity = 84/107 (78.50%), Postives = 96/107 (89.72%), Query Frame = 3 Query: 6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326 MREI+HIQ GQCGNQIG+KFWEVI DEHG+DP+G Y GD DLQLERI+VYYNEAS +YVPRA+L+DLEPGTMDS+RSG +G +FRPDNF+FGQSGAGNNWAKGH Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDS--DLQLERISVYYNEASSHKYVPRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGH 105
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB3_HUMAN (Tubulin beta-3 chain OS=Homo sapiens GN=TUBB3 PE=1 SV=2) HSP 1 Score: 187.193 bits (474), Expect = 2.252e-47 Identity = 84/107 (78.50%), Postives = 96/107 (89.72%), Query Frame = 3 Query: 6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326 MREI+HIQ GQCGNQIG+KFWEVI DEHG+DP+G Y GD DLQLERI+VYYNEAS +YVPRA+L+DLEPGTMDS+RSG +G +FRPDNF+FGQSGAGNNWAKGH Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDS--DLQLERISVYYNEASSHKYVPRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGH 105
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB3_BOVIN (Tubulin beta-3 chain OS=Bos taurus GN=TUBB3 PE=2 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 2.252e-47 Identity = 84/107 (78.50%), Postives = 96/107 (89.72%), Query Frame = 3 Query: 6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326 MREI+HIQ GQCGNQIG+KFWEVI DEHG+DP+G Y GD DLQLERI+VYYNEAS +YVPRA+L+DLEPGTMDS+RSG +G +FRPDNF+FGQSGAGNNWAKGH Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDS--DLQLERISVYYNEASSHKYVPRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGH 105
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB3_ECHMU (Tubulin beta-3 chain OS=Echinococcus multilocularis GN=TUB-3 PE=3 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 8.559e-47 Identity = 82/107 (76.64%), Postives = 93/107 (86.92%), Query Frame = 3 Query: 6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326 MRE++H+Q GQCGNQIGSKFWE I EHG+D G Y GD DLQLERINVYYNE GG+YVPRA+L+DLEPGTMDS+RSGP G++FRPDNF+FGQSGAGNNWAKGH Sbjct: 1 MRELVHMQAGQCGNQIGSKFWETISQEHGIDEMGSYHGDS--DLQLERINVYYNEGQGGKYVPRALLIDLEPGTMDSVRSGPLGKLFRPDNFIFGQSGAGNNWAKGH 105
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB8_HUMAN (Tubulin beta-8 chain OS=Homo sapiens GN=TUBB8 PE=1 SV=2) HSP 1 Score: 184.111 bits (466), Expect = 1.907e-46 Identity = 85/107 (79.44%), Postives = 93/107 (86.92%), Query Frame = 3 Query: 6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326 MREI+ Q GQCGNQIG+KFWEVI DEH +D G Y GD LQLERINVYYNEASGGRYVPRAVL+DLEPGTMDS+RSGP+GQ+FRPDNF+FGQ GAGNNWAKGH Sbjct: 1 MREIVLTQIGQCGNQIGAKFWEVISDEHAIDSAGTYHGDS--HLQLERINVYYNEASGGRYVPRAVLVDLEPGTMDSVRSGPFGQVFRPDNFIFGQCGAGNNWAKGH 105
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB1_HOMAM (Tubulin beta-1 chain OS=Homarus americanus PE=2 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 3.253e-46 Identity = 81/109 (74.31%), Postives = 98/109 (89.91%), Query Frame = 3 Query: 6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVE--DLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326 MREI+H+Q GQCGNQIG+KFWE+I DEHG+ PTG+Y G + +LQLERINVYYNE + G+YVPRAVL+DLEPGTMDS+R+GP+GQ+F+PD+FVFGQSGAGNNWAKGH Sbjct: 1 MREIVHLQTGQCGNQIGTKFWEIISDEHGIQPTGEYTGADKDLMELQLERINVYYNEGNQGKYVPRAVLVDLEPGTMDSVRAGPHGQLFKPDSFVFGQSGAGNNWAKGH 109
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_EUGGR (Tubulin beta chain OS=Euglena gracilis GN=TUBB PE=2 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 4.248e-46 Identity = 88/107 (82.24%), Postives = 94/107 (87.85%), Query Frame = 3 Query: 6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326 MREI+HIQ GQCGNQIGSKFWEVI DE GVDP G DLQLERINVYYNEA+GGRYVP A+LMDLEPGTMDS+R+GPYGQIFRPDNFVFGQ+GAGNNWAKGH Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEQGVDPPDI---PGDSDLQLERINVYYNEATGGRYVP-AILMDLEPGTMDSVRAGPYGQIFRPDNFVFGQTGAGNNWAKGH 103
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB2_HOMAM (Tubulin beta-2 chain OS=Homarus americanus PE=2 SV=1) HSP 1 Score: 182.956 bits (463), Expect = 4.248e-46 Identity = 84/111 (75.68%), Postives = 99/111 (89.19%), Query Frame = 3 Query: 6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVE----DLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326 MREI+HIQ GQCGNQIG+KFWE+I DEHG+ PTG+Y GVE +LQLERINVYYNE + G+YVPRAVL+DLEPGTMDS+R+GP+GQ+F+PD+FVFGQSGAGNNWAKGH Sbjct: 1 MREIVHIQTGQCGNQIGTKFWEIISDEHGIQPTGEYT-TGVEKDLMELQLERINVYYNEGNQGKYVPRAVLVDLEPGTMDSVRAGPHGQLFKPDSFVFGQSGAGNNWAKGH 110 The following BLAST results are available for this feature:
BLAST of CF503857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 402
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Sequences
The
following sequences are available for this feature:
EST sequence >CF503857 ID=CF503857; Name=CF503857; organism=Citrus sinensis; type=EST; length=328bpback to top |