CF503857

Overview
NameCF503857
Unique NameCF503857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length328
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_RHYSE (Tubulin beta chain OS=Rhynchosporium secalis PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.046e-44
Identity = 79/107 (73.83%), Postives = 95/107 (88.79%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+H+Q GQCGNQIG+ FW+ I  EHG+D +G Y  +G  DLQLER+NVY+NEASG +YVPRAVL+DLEPGTMD++R+GP+GQ+FRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDGSGVY--NGTSDLQLERLNVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_COPC7 (Tubulin beta chain OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_04743 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.046e-44
Identity = 80/107 (74.77%), Postives = 93/107 (86.92%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+H+Q GQCGNQIG+KFWEV+ DEHG++  G Y+G+   DLQLERI+VYYNE    +YVPRAVL+DLEPGTMDS+RSGP G +FRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHLQTGQCGNQIGAKFWEVVSDEHGIERDGLYKGNN--DLQLERISVYYNEIGASKYVPRAVLVDLEPGTMDSVRSGPLGSLFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_USTMA (Tubulin beta chain OS=Ustilago maydis GN=UM05828 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.367e-44
Identity = 82/107 (76.64%), Postives = 91/107 (85.05%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+H+Q GQCGNQ+G+KFWEV+ DEHG+D  G Y G    D QL RINVYYNEASG +YVPRAVL+DLEPGTMDS RSGP G +FRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHLQTGQCGNQVGTKFWEVLSDEHGIDHNGNYIG--TSDDQLARINVYYNEASGNKYVPRAVLVDLEPGTMDSTRSGPLGGLFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_MYCPJ (Tubulin beta chain OS=Mycosphaerella pini GN=TUB1 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.367e-44
Identity = 79/107 (73.83%), Postives = 95/107 (88.79%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+H+Q GQCGNQIG+ FW+ I  EHG+D +G Y  +G  DLQLER+NVY+NEASG +YVPRAVL+DLEPGTMD++R+GP+GQ+FRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDGSGVY--NGTSDLQLERMNVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_MYCGR (Tubulin beta chain OS=Mycosphaerella graminicola GN=TUB1 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.367e-44
Identity = 79/107 (73.83%), Postives = 95/107 (88.79%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+H+Q GQCGNQIG+ FW+ I  EHG+D +G Y  +G  DLQLER+NVY+NEASG +YVPRAVL+DLEPGTMD++R+GP+GQ+FRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDGSGVY--NGTSDLQLERMNVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_ERYGR (Tubulin beta chain OS=Erysiphe graminis subsp. hordei GN=TUB2 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.367e-44
Identity = 79/107 (73.83%), Postives = 95/107 (88.79%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+H+Q GQCGNQIG+ FW+ I  EHG+D +G Y  +G  DLQLER+NVY+NEASG +YVPRAVL+DLEPGTMD++R+GP+GQ+FRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDGSGVY--NGTSDLQLERMNVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_BOTFU (Tubulin beta chain OS=Botryotinia fuckeliana GN=tubA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.367e-44
Identity = 79/107 (73.83%), Postives = 95/107 (88.79%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+H+Q GQCGNQIG+ FW+ I  EHG+D +G Y  +G  DLQLER+NVY+NEASG +YVPRAVL+DLEPGTMD++R+GP+GQ+FRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDGSGVY--NGTSDLQLERMNVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB2_ERYPI (Tubulin beta-2 chain OS=Erysiphe pisi GN=TUB2 PE=2 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 1.367e-44
Identity = 79/107 (73.83%), Postives = 95/107 (88.79%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+H+Q GQCGNQIG+ FW+ I  EHG+D +G Y  +G  DLQLER+NVY+NEASG +YVPRAVL+DLEPGTMD++R+GP+GQ+FRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDGSGVY--NGTSDLQLERMNVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_PLESA (Tubulin beta chain OS=Pleurotus sajor-caju PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.785e-44
Identity = 79/107 (73.83%), Postives = 92/107 (85.98%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+H+Q GQC NQIG+KFWEV+ DEHG++P G Y+G+   DLQLERI+VYYNE    +YVPRAVL+DLEPGTMDS+RSGP G +FRPDNFVFGQSG GNNWAKGH
Sbjct:    1 MREIVHLQTGQCRNQIGAKFWEVVSDEHGIEPDGLYKGNN--DLQLERISVYYNEVGANKYVPRAVLVDLEPGTMDSVRSGPLGSLFRPDNFVFGQSGGGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_ASPOR (Tubulin beta chain OS=Aspergillus oryzae GN=benA56 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.785e-44
Identity = 79/107 (73.83%), Postives = 94/107 (87.85%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+H+Q GQCGNQIG+ FW+ I  EHG+D +G Y G    DLQLER+NVY+NEASG +YVPRAVL+DLEPGTMD++R+GP+GQ+FRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDGSGVYNGSS--DLQLERMNVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGH 105
The following BLAST results are available for this feature:
BLAST of CF503857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 402
Match NameE-valueIdentityDescription
TBB_RHYSE1.046e-4473.83Tubulin beta chain OS=Rhynchosporium secalis PE=3 ... [more]
TBB_COPC71.046e-4474.77Tubulin beta chain OS=Coprinopsis cinerea (strain ... [more]
TBB_USTMA1.367e-4476.64Tubulin beta chain OS=Ustilago maydis GN=UM05828 P... [more]
TBB_MYCPJ1.367e-4473.83Tubulin beta chain OS=Mycosphaerella pini GN=TUB1 ... [more]
TBB_MYCGR1.367e-4473.83Tubulin beta chain OS=Mycosphaerella graminicola G... [more]
TBB_ERYGR1.367e-4473.83Tubulin beta chain OS=Erysiphe graminis subsp. hor... [more]
TBB_BOTFU1.367e-4473.83Tubulin beta chain OS=Botryotinia fuckeliana GN=tu... [more]
TBB2_ERYPI1.367e-4473.83Tubulin beta-2 chain OS=Erysiphe pisi GN=TUB2 PE=2... [more]
TBB_PLESA1.785e-4473.83Tubulin beta chain OS=Pleurotus sajor-caju PE=2 SV... [more]
TBB_ASPOR1.785e-4473.83Tubulin beta chain OS=Aspergillus oryzae GN=benA56... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-344 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503857 ID=CF503857; Name=CF503857; organism=Citrus sinensis; type=EST; length=328bp
GATAAATGAGAGAGATCTTGCACATTCAAGGAGGCCAATGCGGCAACCAA
ATCGGCTCCAAATTCTGGGAAGTCATTTGCGACGAGCATGGCGTGGACCC
CACGGGGAAGTATAGAGGTGACGGCGTTGAGGATCTTCAACTGGAGCGAA
TCAATGTCTATTACAACGAAGCTTCCGGTGGAAGGTACGTGCCTCGAGCT
GTTCTCATGGATCTTGAACCCGGTACCATGGATAGTATCAGATCCGGCCC
GTACGGCCAGATCTTTCGACCTGATAACTTCGTTTTTGGACAATCCGGTG
CGGGCAATAACTGGGCCAAAGGTCATTA
back to top