CF503857
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA3_HOMAM (Tubulin alpha-3 chain OS=Homarus americanus PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 4.729e-21 Identity = 45/107 (42.06%), Postives = 65/107 (60.75%), Query Frame = 3 Query: 6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326 MRE + I GQ G Q+G+ WE+ C EHG+ P G+ D + N ++ E G++VPRAV +DLEP +D IR+G Y Q+F P+ + G+ A NN+A+GH Sbjct: 1 MRECISIHVGQAGAQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFCETGAGKHVPRAVFVDLEPTVIDEIRTGVYRQLFHPEQLITGKEDAANNYARGH 107
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG1_RAT (Tubulin gamma-1 chain OS=Rattus norvegicus GN=Tubg1 PE=2 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 6.177e-21 Identity = 47/107 (43.93%), Postives = 67/107 (62.62%), Query Frame = 3 Query: 9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKG 323 REI+ +Q GQCGNQIG +FW+ +C EHG+ P G E +R +V++ +A Y+PRAVL+DLEP + SI + Y +++ P+N + GAGNNWA G Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEG--TDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSSYAKLYNPENIYLSEHGGGAGNNWASG 107
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG1_MOUSE (Tubulin gamma-1 chain OS=Mus musculus GN=Tubg1 PE=1 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 6.177e-21 Identity = 47/107 (43.93%), Postives = 67/107 (62.62%), Query Frame = 3 Query: 9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKG 323 REI+ +Q GQCGNQIG +FW+ +C EHG+ P G E +R +V++ +A Y+PRAVL+DLEP + SI + Y +++ P+N + GAGNNWA G Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEG--TDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSSYAKLYNPENIYLSEHGGGAGNNWASG 107
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA1_STYLE (Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 SV=2) HSP 1 Score: 99.3673 bits (246), Expect = 6.177e-21 Identity = 43/107 (40.19%), Postives = 65/107 (60.75%), Query Frame = 3 Query: 6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326 MRE++ I GQ G QIG+ WE+ C EHG+ P G+ D + N +++E ++VPR V +DLEP +D +R+G Y Q+F P+ + G+ A NN+A+GH Sbjct: 1 MREVISIHVGQAGIQIGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAEKHVPRCVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGH 107
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG1_DROME (Tubulin gamma-1 chain OS=Drosophila melanogaster GN=gammaTub23C PE=1 SV=2) HSP 1 Score: 98.9821 bits (245), Expect = 8.067e-21 Identity = 47/110 (42.73%), Postives = 71/110 (64.55%), Query Frame = 3 Query: 12 EILHIQGGQCGNQIGSKFWEVICDEHGVDPTG---KYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGH 326 EI+ +Q GQCGNQIG +FW+ +C EHG+ P+G + DG L+R +V++ +A Y+PRAVL+DLEP +++I Y +++ P+N + GAGNNWA G+ Sbjct: 4 EIITLQLGQCGNQIGFEFWKRLCLEHGISPSGVLEDFANDG-----LDRKDVFFYQADDDHYIPRAVLLDLEPRVINTIMGSVYSKLYNPENVYLSKHGGGAGNNWASGY 108
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA_ENCCU (Tubulin alpha chain OS=Encephalitozoon cuniculi GN=TUB1 PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 8.067e-21 Identity = 44/107 (41.12%), Postives = 69/107 (64.49%), Query Frame = 3 Query: 6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326 MREI+ + GQ G QIG+ WE+ C EHG+ P G+ + ++D E +++ S G YVPR +++DLEPG +DSI++G Y +++ P + G+ A NN+A+GH Sbjct: 1 MREIISLHIGQAGVQIGNACWELYCKEHGILPNGQLDQNKMDD---ESAESFFSPTSVGTYVPRTLMVDLEPGVLDSIKTGKYRELYHPGQLISGKEDAANNYARGH 104
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA8_HUMAN (Tubulin alpha-8 chain OS=Homo sapiens GN=TUBA8 PE=1 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 8.067e-21 Identity = 46/113 (40.71%), Postives = 69/113 (61.06%), Query Frame = 3 Query: 6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERIN------VYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326 MRE + + GQ G QIG+ WE+ C EHG+ + DG D Q +IN +++E G++VPRAV++DLEP +D +R+G Y Q+F P+ + G+ A NN+A+GH Sbjct: 1 MRECISVHVGQAGVQIGNACWELFCLEHGI------QADGTFDAQASKINDDDSFTTFFSETGNGKHVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGH 107
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA2_DROME (Tubulin alpha-2 chain OS=Drosophila melanogaster GN=alphaTub85E PE=1 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 8.067e-21 Identity = 43/107 (40.19%), Postives = 65/107 (60.75%), Query Frame = 3 Query: 6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326 MRE + + GQ G QIG+ WE+ C EHG+ P G D + + +++E G++VPRAV +DLEP +D +R+G Y Q+F P+ + G+ A NN+A+GH Sbjct: 1 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGHMPSDKTVGGGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGH 107
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG_DICDI (Tubulin gamma chain OS=Dictyostelium discoideum GN=tubC PE=1 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.054e-20 Identity = 46/111 (41.44%), Postives = 73/111 (65.77%), Query Frame = 3 Query: 9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTG---KYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGH 326 REI+ +Q GQCGNQIGS+FW+ +C EHG++ G ++ G+ +R +V++ ++ YVPRA+L+DLEP +DSI++ Y ++ +N + +GAGNNWA G+ Sbjct: 3 REIITLQVGQCGNQIGSEFWKQLCKEHGINAAGYLEEFAKPGI-----DRKDVFFYQSDDDHYVPRALLLDLEPRVIDSIKTSEYSGLYNQENIFVAEKGTGAGNNWANGY 108
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG2_MOUSE (Tubulin gamma-2 chain OS=Mus musculus GN=Tubg2 PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.054e-20 Identity = 46/107 (42.99%), Postives = 67/107 (62.62%), Query Frame = 3 Query: 9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKG 323 REI+ +Q GQCGNQIG +FW+ +C EHG+ P G E +R +V++ +A Y+PRAVL+DLEP + SI + Y +++ P+N + GAGNNW +G Sbjct: 3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEG--TDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSSYAKLYNPENIYLSEHGGGAGNNWGRG 107 The following BLAST results are available for this feature:
BLAST of CF503857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 402
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Sequences
The
following sequences are available for this feature:
EST sequence >CF503857 ID=CF503857; Name=CF503857; organism=Citrus sinensis; type=EST; length=328bpback to top |