CF503857

Overview
NameCF503857
Unique NameCF503857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length328
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA3_HOMAM (Tubulin alpha-3 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.729e-21
Identity = 45/107 (42.06%), Postives = 65/107 (60.75%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE + I  GQ G Q+G+  WE+ C EHG+ P G+   D       +  N ++ E   G++VPRAV +DLEP  +D IR+G Y Q+F P+  + G+  A NN+A+GH
Sbjct:    1 MRECISIHVGQAGAQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFCETGAGKHVPRAVFVDLEPTVIDEIRTGVYRQLFHPEQLITGKEDAANNYARGH 107          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG1_RAT (Tubulin gamma-1 chain OS=Rattus norvegicus GN=Tubg1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.177e-21
Identity = 47/107 (43.93%), Postives = 67/107 (62.62%), Query Frame = 3
Query:    9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKG 323
            REI+ +Q GQCGNQIG +FW+ +C EHG+ P G       E    +R +V++ +A    Y+PRAVL+DLEP  + SI +  Y +++ P+N    +   GAGNNWA G
Sbjct:    3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEG--TDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSSYAKLYNPENIYLSEHGGGAGNNWASG 107          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG1_MOUSE (Tubulin gamma-1 chain OS=Mus musculus GN=Tubg1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.177e-21
Identity = 47/107 (43.93%), Postives = 67/107 (62.62%), Query Frame = 3
Query:    9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKG 323
            REI+ +Q GQCGNQIG +FW+ +C EHG+ P G       E    +R +V++ +A    Y+PRAVL+DLEP  + SI +  Y +++ P+N    +   GAGNNWA G
Sbjct:    3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEG--TDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSSYAKLYNPENIYLSEHGGGAGNNWASG 107          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA1_STYLE (Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 6.177e-21
Identity = 43/107 (40.19%), Postives = 65/107 (60.75%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE++ I  GQ G QIG+  WE+ C EHG+ P G+   D       +  N +++E    ++VPR V +DLEP  +D +R+G Y Q+F P+  + G+  A NN+A+GH
Sbjct:    1 MREVISIHVGQAGIQIGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAEKHVPRCVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGH 107          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG1_DROME (Tubulin gamma-1 chain OS=Drosophila melanogaster GN=gammaTub23C PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 8.067e-21
Identity = 47/110 (42.73%), Postives = 71/110 (64.55%), Query Frame = 3
Query:   12 EILHIQGGQCGNQIGSKFWEVICDEHGVDPTG---KYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGH 326
            EI+ +Q GQCGNQIG +FW+ +C EHG+ P+G    +  DG     L+R +V++ +A    Y+PRAVL+DLEP  +++I    Y +++ P+N    +   GAGNNWA G+
Sbjct:    4 EIITLQLGQCGNQIGFEFWKRLCLEHGISPSGVLEDFANDG-----LDRKDVFFYQADDDHYIPRAVLLDLEPRVINTIMGSVYSKLYNPENVYLSKHGGGAGNNWASGY 108          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA_ENCCU (Tubulin alpha chain OS=Encephalitozoon cuniculi GN=TUB1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.067e-21
Identity = 44/107 (41.12%), Postives = 69/107 (64.49%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+ +  GQ G QIG+  WE+ C EHG+ P G+   + ++D   E    +++  S G YVPR +++DLEPG +DSI++G Y +++ P   + G+  A NN+A+GH
Sbjct:    1 MREIISLHIGQAGVQIGNACWELYCKEHGILPNGQLDQNKMDD---ESAESFFSPTSVGTYVPRTLMVDLEPGVLDSIKTGKYRELYHPGQLISGKEDAANNYARGH 104          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA8_HUMAN (Tubulin alpha-8 chain OS=Homo sapiens GN=TUBA8 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.067e-21
Identity = 46/113 (40.71%), Postives = 69/113 (61.06%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERIN------VYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE + +  GQ G QIG+  WE+ C EHG+      + DG  D Q  +IN       +++E   G++VPRAV++DLEP  +D +R+G Y Q+F P+  + G+  A NN+A+GH
Sbjct:    1 MRECISVHVGQAGVQIGNACWELFCLEHGI------QADGTFDAQASKINDDDSFTTFFSETGNGKHVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGH 107          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA2_DROME (Tubulin alpha-2 chain OS=Drosophila melanogaster GN=alphaTub85E PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.067e-21
Identity = 43/107 (40.19%), Postives = 65/107 (60.75%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE + +  GQ G QIG+  WE+ C EHG+ P G    D       +  + +++E   G++VPRAV +DLEP  +D +R+G Y Q+F P+  + G+  A NN+A+GH
Sbjct:    1 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGHMPSDKTVGGGDDSFSTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGH 107          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG_DICDI (Tubulin gamma chain OS=Dictyostelium discoideum GN=tubC PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.054e-20
Identity = 46/111 (41.44%), Postives = 73/111 (65.77%), Query Frame = 3
Query:    9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTG---KYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGH 326
            REI+ +Q GQCGNQIGS+FW+ +C EHG++  G   ++   G+     +R +V++ ++    YVPRA+L+DLEP  +DSI++  Y  ++  +N    +  +GAGNNWA G+
Sbjct:    3 REIITLQVGQCGNQIGSEFWKQLCKEHGINAAGYLEEFAKPGI-----DRKDVFFYQSDDDHYVPRALLLDLEPRVIDSIKTSEYSGLYNQENIFVAEKGTGAGNNWANGY 108          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG2_MOUSE (Tubulin gamma-2 chain OS=Mus musculus GN=Tubg2 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.054e-20
Identity = 46/107 (42.99%), Postives = 67/107 (62.62%), Query Frame = 3
Query:    9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKG 323
            REI+ +Q GQCGNQIG +FW+ +C EHG+ P G       E    +R +V++ +A    Y+PRAVL+DLEP  + SI +  Y +++ P+N    +   GAGNNW +G
Sbjct:    3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEG--TDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSSYAKLYNPENIYLSEHGGGAGNNWGRG 107          
The following BLAST results are available for this feature:
BLAST of CF503857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 402
Match NameE-valueIdentityDescription
TBA3_HOMAM4.729e-2142.06Tubulin alpha-3 chain OS=Homarus americanus PE=2 S... [more]
TBG1_RAT6.177e-2143.93Tubulin gamma-1 chain OS=Rattus norvegicus GN=Tubg... [more]
TBG1_MOUSE6.177e-2143.93Tubulin gamma-1 chain OS=Mus musculus GN=Tubg1 PE=... [more]
TBA1_STYLE6.177e-2140.19Tubulin alpha-1 chain OS=Stylonychia lemnae PE=3 S... [more]
TBG1_DROME8.067e-2142.73Tubulin gamma-1 chain OS=Drosophila melanogaster G... [more]
TBA_ENCCU8.067e-2141.12Tubulin alpha chain OS=Encephalitozoon cuniculi GN... [more]
TBA8_HUMAN8.067e-2140.71Tubulin alpha-8 chain OS=Homo sapiens GN=TUBA8 PE=... [more]
TBA2_DROME8.067e-2140.19Tubulin alpha-2 chain OS=Drosophila melanogaster G... [more]
TBG_DICDI1.054e-2041.44Tubulin gamma chain OS=Dictyostelium discoideum GN... [more]
TBG2_MOUSE1.054e-2042.99Tubulin gamma-2 chain OS=Mus musculus GN=Tubg2 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-344 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503857 ID=CF503857; Name=CF503857; organism=Citrus sinensis; type=EST; length=328bp
GATAAATGAGAGAGATCTTGCACATTCAAGGAGGCCAATGCGGCAACCAA
ATCGGCTCCAAATTCTGGGAAGTCATTTGCGACGAGCATGGCGTGGACCC
CACGGGGAAGTATAGAGGTGACGGCGTTGAGGATCTTCAACTGGAGCGAA
TCAATGTCTATTACAACGAAGCTTCCGGTGGAAGGTACGTGCCTCGAGCT
GTTCTCATGGATCTTGAACCCGGTACCATGGATAGTATCAGATCCGGCCC
GTACGGCCAGATCTTTCGACCTGATAACTTCGTTTTTGGACAATCCGGTG
CGGGCAATAACTGGGCCAAAGGTCATTA
back to top