CF503857

Overview
NameCF503857
Unique NameCF503857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length328
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA8_BOVIN (Tubulin alpha-8 chain OS=Bos taurus GN=TUBA8 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.829e-20
Identity = 40/107 (37.38%), Postives = 64/107 (59.81%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE + +  GQ G QIG+  WE+ C EHG+   G +     +    +    +++E   G++VPRAV++DLEP  +D +R+G Y  +F P+  + G+  A NN+A+GH
Sbjct:    1 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKIHDDDSFTTFFSETGNGKHVPRAVMVDLEPTVVDEVRAGTYRHLFHPEQLITGKEDAANNYARGH 107          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA2_EMENI (Tubulin alpha-2 chain OS=Emericella nidulans GN=tubB PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 8.919e-20
Identity = 41/106 (38.68%), Postives = 64/106 (60.38%), Query Frame = 3
Query:   12 EILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLE-RINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            E+ HI  GQ G Q+G+  WE+   EHG+   G+   +  ED+        ++ E   G+YVPR++ +DL+P  +D IR+GPY Q+F P+  + G+  A NN+A+GH
Sbjct:    4 EVCHIHIGQAGTQLGNSAWELYLLEHGLGADGRLDPEKGEDINAGGSFETFFTETGSGKYVPRSIFVDLDPSPIDEIRTGPYRQLFHPEQLISGKEDAANNYARGH 109          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA1_YEAST (Tubulin alpha-1 chain OS=Saccharomyces cerevisiae GN=TUB1 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 8.919e-20
Identity = 44/109 (40.37%), Postives = 68/109 (62.39%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQ--LERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE++ I  GQ G QIG+  WE+   EHG+ P G    DG+   +   E  + +++E   G++VPRA+ +DLEP  +D +R+GPY  +F P+  + G+  A NN+A+GH
Sbjct:    1 MREVISINVGQAGCQIGNACWELYSLEHGIKPDGHLE-DGLSKPKGGEEGFSTFFHETGYGKFVPRAIYVDLEPNVIDEVRNGPYKDLFHPEQLISGKEDAANNYARGH 108          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA1_NEUCR (Tubulin alpha-A chain OS=Neurospora crassa GN=tba-1 PE=2 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 8.919e-20
Identity = 41/105 (39.05%), Postives = 66/105 (62.86%), Query Frame = 3
Query:   12 EILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            E++HI  GQ G Q+G+  WE+   EHG+   G+   D     +    + ++ E+S G+YVPR++ +DL+P  +D IR+GPY Q+F P+  + G+  A NN+A+GH
Sbjct:    4 EVVHIHLGQAGTQLGNSAWELYLLEHGLTQDGRKDPDSTVAGEGGSYDTFFTESSNGKYVPRSLFVDLDPSPIDEIRTGPYRQLFHPELLISGKEDAANNYARGH 108          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBAN_GUITH (Tubulin alpha chain, nucleomorph OS=Guillardia theta GN=tubA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.165e-19
Identity = 41/107 (38.32%), Postives = 65/107 (60.75%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE+L I  GQ G Q+G+  WE+ C EHG++P G    D  +    +  + +++E S G+ VPR V +DLE G +D +++G Y  ++ P+  + G   A NN+A+GH
Sbjct:    1 MREVLSIHIGQAGIQVGNACWELYCLEHGINPDGSIIQDFNKKKNDDAFSTFFSETSTGKRVPRCVFLDLESGVIDEVKNGRYKNLYHPEQLICGNEDAANNYARGH 107          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG_COPC7 (Tubulin gamma chain OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TUB4 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.987e-19
Identity = 43/108 (39.81%), Postives = 69/108 (63.89%), Query Frame = 3
Query:    9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGH 326
            REI+ +Q GQCGNQ+G+ +W+ +C EHG+   G       E    +R +V++ +A    Y+PRA+L+DLEP  +++I + PY  ++ P+N    +   GAGNNWA+G+
Sbjct:    3 REIVTVQLGQCGNQMGAVYWQRLCAEHGISSEGILEEWATEGG--DRKDVFFYQADDEHYIPRAILVDLEPRVINNILASPYANLYNPENIFVSKDGGGAGNNWAQGY 108          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB1_AVESA (Tubulin beta-1 chain (Fragment) OS=Avena sativa GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.595e-19
Identity = 41/43 (95.35%), Postives = 43/43 (100.00%), Query Frame = 3
Query:  198 AVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            AVLMDLEPGTMDS+R+GPYGQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 AVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGH 43          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBAB_SCHCO (Tubulin alpha-1B chain OS=Schizophyllum commune GN=TUB-1B PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.595e-19
Identity = 40/107 (37.38%), Postives = 67/107 (62.62%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE++ +  GQ G QIG+  WE+   EHG+ P G+   D     + +  + +++E   G++VPR + +DLEPG +D +++GPY  +F P+  + G+  A NN+A+GH
Sbjct:    1 MREVISVHVGQAGVQIGNACWELYTLEHGLSPDGRLMDDSPS--KHDSGSTFFSETGQGKHVPRRLYVDLEPGVIDDVKNGPYRSLFHPETMITGKEDAANNYARGH 105          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA5_CHICK (Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.595e-19
Identity = 40/107 (37.38%), Postives = 63/107 (58.88%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE + +  GQ G Q+G+  WE+ C EHG+ P G+   D       +    ++ E   G++VPRA+ +DLEP  +D +R+G Y Q+F P+  + G+    NN+A+GH
Sbjct:    1 MRECISVHVGQAGVQMGNTCWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAIFVDLEPTVIDEVRAGIYRQLFHPEQLITGKEDGANNYARGH 107          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA2_CHICK (Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.595e-19
Identity = 41/107 (38.32%), Postives = 63/107 (58.88%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE + +  GQ G QIG+  WE+ C EH + P G +      D   +    ++ E S  +YVPRA+++DLEP  +D +R+G Y  +F P+  + G+  A NN+A+GH
Sbjct:    1 MRECISVHIGQAGVQIGNACWELFCLEHSIQPDGTFSDPPSSD---DSFATFFRETSMSKYVPRAIMVDLEPTVVDEVRTGTYRHLFHPEQLITGKEDAANNYARGH 104          
The following BLAST results are available for this feature:
BLAST of CF503857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 402
Match NameE-valueIdentityDescription
TBA8_BOVIN6.829e-2037.38Tubulin alpha-8 chain OS=Bos taurus GN=TUBA8 PE=2 ... [more]
TBA2_EMENI8.919e-2038.68Tubulin alpha-2 chain OS=Emericella nidulans GN=tu... [more]
TBA1_YEAST8.919e-2040.37Tubulin alpha-1 chain OS=Saccharomyces cerevisiae ... [more]
TBA1_NEUCR8.919e-2039.05Tubulin alpha-A chain OS=Neurospora crassa GN=tba-... [more]
TBAN_GUITH1.165e-1938.32Tubulin alpha chain, nucleomorph OS=Guillardia the... [more]
TBG_COPC71.987e-1939.81Tubulin gamma chain OS=Coprinopsis cinerea (strain... [more]
TBB1_AVESA2.595e-1995.35Tubulin beta-1 chain (Fragment) OS=Avena sativa GN... [more]
TBAB_SCHCO2.595e-1937.38Tubulin alpha-1B chain OS=Schizophyllum commune GN... [more]
TBA5_CHICK2.595e-1937.38Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1[more]
TBA2_CHICK2.595e-1938.32Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-344 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503857 ID=CF503857; Name=CF503857; organism=Citrus sinensis; type=EST; length=328bp
GATAAATGAGAGAGATCTTGCACATTCAAGGAGGCCAATGCGGCAACCAA
ATCGGCTCCAAATTCTGGGAAGTCATTTGCGACGAGCATGGCGTGGACCC
CACGGGGAAGTATAGAGGTGACGGCGTTGAGGATCTTCAACTGGAGCGAA
TCAATGTCTATTACAACGAAGCTTCCGGTGGAAGGTACGTGCCTCGAGCT
GTTCTCATGGATCTTGAACCCGGTACCATGGATAGTATCAGATCCGGCCC
GTACGGCCAGATCTTTCGACCTGATAACTTCGTTTTTGGACAATCCGGTG
CGGGCAATAACTGGGCCAAAGGTCATTA
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