CF503857

Overview
NameCF503857
Unique NameCF503857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length328
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA_GIBZE (Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.389e-19
Identity = 40/107 (37.38%), Postives = 63/107 (58.88%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE++ I  GQ G QI +  WE+ C EHG+ P G    +       +  + +++E   G++VPRA+  DLEP  +D +R+G Y  +F P+  + G+  A NN+A+GH
Sbjct:    1 MREVISINVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKAQDPDQGFSTFFSETGNGKHVPRAIYCDLEPNVVDEVRTGAYRNLFHPEMMITGKEDASNNYARGH 107          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA_ONCKE (Tubulin alpha chain OS=Oncorhynchus keta PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.427e-19
Identity = 39/98 (39.80%), Postives = 61/98 (62.24%), Query Frame = 3
Query:   33 GQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            GQ G Q+G+  WE+ C EHG+ P G+   D       +  N +++E   G++VPRA+ +DLEP  +D +R+G Y Q+F P+  + G+  A NN+A+GH
Sbjct:    4 GQAGVQMGNACWELYCLEHGIQPDGQMPSDKTCGGGDDSFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGIYRQLFHPEQLITGKEDAANNYARGH 101          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA_MYCGR (Tubulin alpha chain OS=Mycosphaerella graminicola PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.781e-19
Identity = 39/107 (36.45%), Postives = 62/107 (57.94%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE++ +  GQ G QI +  WE+ C EHG+ P G    +       +  + +++E   G+YVPR +  DLEP  +D +R+G Y  +F P+  + G+  A NN+A+GH
Sbjct:    1 MREVISLNVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKAAEDDDGFSTFFSETGNGKYVPRTIYADLEPNVVDEVRTGTYRSLFHPELMITGKEDASNNYARGH 107          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA_SORMA (Tubulin alpha chain OS=Sordaria macrospora GN=TUBA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.551e-19
Identity = 40/107 (37.38%), Postives = 62/107 (57.94%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+ +  GQ G QI +  WE+ C EHG+ P G    +          + +++E   G+YVPR +  DLEP  +D +R+G Y  +F P++ + G+  A NN+A+GH
Sbjct:    1 MREIISLNVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKAADPDHGFSTFFSETGNGKYVPRTIYADLEPNVIDEVRTGAYRGLFHPEHMISGKEDASNNYARGH 107          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA_ASHGO (Tubulin alpha chain OS=Ashbya gossypii GN=TUB1 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.551e-19
Identity = 44/110 (40.00%), Postives = 69/110 (62.73%), Query Frame = 3
Query:    6 MREILHIQG-GQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQ--LERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE++ +   GQ G QIG+  WE+   EHG+ P G Y  +G+   +   E  + ++NE   G++VPRAV +DLEP  +D +R+G Y ++F P+  + G+  A NN+A+GH
Sbjct:    1 MREVISVNAVGQAGCQIGNACWELYSLEHGIRPDG-YLQEGLTKPKGGEEGFSTFFNETGSGKFVPRAVYVDLEPNVIDEVRTGAYRELFHPEQLISGKEDAANNYARGH 109          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA2_NEUCR (Tubulin alpha-B chain OS=Neurospora crassa GN=tba-2 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.551e-19
Identity = 40/107 (37.38%), Postives = 62/107 (57.94%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+ +  GQ G QI +  WE+ C EHG+ P G    +          + +++E   G+YVPR +  DLEP  +D +R+G Y  +F P++ + G+  A NN+A+GH
Sbjct:    1 MREIISLNVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKAADPDHGFSTFFSETGNGKYVPRTIYADLEPNVIDEVRTGAYRGLFHPEHMISGKEDASNNYARGH 107          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBAL3_MOUSE (Tubulin alpha chain-like 3 OS=Mus musculus GN=Tubal3 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.862e-19
Identity = 46/113 (40.71%), Postives = 67/113 (59.29%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTG---KYRGDGVEDLQLERINV----YYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKG 323
            MRE L I  GQ G QIG   WE+ C EHG+ P G    ++ D +E+ ++E +N     +++E   G++VPR + MDLEP  +D IR G Y  +F P+  V G+  A N +A+G
Sbjct:    1 MRECLSIHIGQAGVQIGDACWELYCLEHGIQPDGFILDHQHDNLENPKVEHMNASLDTFFHETRAGKHVPRTLFMDLEPTVIDGIRVGRYHSLFHPEQLVNGKEDAANTYARG 113          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG_PLAFO (Tubulin gamma chain OS=Plasmodium falciparum (isolate NF54) GN=G-TUB PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.288e-18
Identity = 41/108 (37.96%), Postives = 68/108 (62.96%), Query Frame = 3
Query:    9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGH 326
            REI+ +Q GQCGNQIG +FW+ +C+EH +D  G  + +    L  +R ++++ +A    ++P A+L DLEP  ++SI++  Y  ++ P+N    +   GAGNNW  G+
Sbjct:    3 REIITLQCGQCGNQIGVEFWKQLCNEHNIDQEGILKNNNF--LNEDRKDIFFYQADDEHFIPGALLFDLEPRVINSIQTSEYRNLYNPENMFISKEGGGAGNNWGCGY 108          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA_DICDI (Tubulin alpha chain OS=Dictyostelium discoideum GN=tubA PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.288e-18
Identity = 42/111 (37.84%), Postives = 67/111 (60.36%), Query Frame = 3
Query:    9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERIN----VYYNEASGGR-YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            REI+ I  GQ G Q+G+  WE+ C EHG++  G    D  +   +  +N     +++E++ G+  VPRA+ +DLEP  +D IR+G Y  +F P+  + G+  A NN+A+GH
Sbjct:    3 REIISIHIGQAGVQVGNSCWELYCLEHGIERDGSIPADRKQSSDVNNLNKDLGTFFSESTNGKKVVPRAIFLDLEPTVIDEIRTGDYKNLFHPEQLITGKEDAANNYARGH 113          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG2_ARATH (Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.682e-18
Identity = 45/111 (40.54%), Postives = 68/111 (61.26%), Query Frame = 3
Query:    9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQL---ERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGH 326
            REI+ +Q GQCGNQIG +FW+ +C EHG+   G      +ED      +R +V++ +A    Y+PRA+L+DLEP  ++ I++G Y  ++  +N        GAGNNWA G+
Sbjct:    3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGI-----LEDFATQGGDRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASGY 108          
The following BLAST results are available for this feature:
BLAST of CF503857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 402
Match NameE-valueIdentityDescription
TBA_GIBZE3.389e-1937.38Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=... [more]
TBA_ONCKE4.427e-1939.80Tubulin alpha chain OS=Oncorhynchus keta PE=2 SV=1[more]
TBA_MYCGR5.781e-1936.45Tubulin alpha chain OS=Mycosphaerella graminicola ... [more]
TBA_SORMA7.551e-1937.38Tubulin alpha chain OS=Sordaria macrospora GN=TUBA... [more]
TBA_ASHGO7.551e-1940.00Tubulin alpha chain OS=Ashbya gossypii GN=TUB1 PE=... [more]
TBA2_NEUCR7.551e-1937.38Tubulin alpha-B chain OS=Neurospora crassa GN=tba-... [more]
TBAL3_MOUSE9.862e-1940.71Tubulin alpha chain-like 3 OS=Mus musculus GN=Tuba... [more]
TBG_PLAFO1.288e-1837.96Tubulin gamma chain OS=Plasmodium falciparum (isol... [more]
TBA_DICDI1.288e-1837.84Tubulin alpha chain OS=Dictyostelium discoideum GN... [more]
TBG2_ARATH1.682e-1840.54Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=T... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-344 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503857 ID=CF503857; Name=CF503857; organism=Citrus sinensis; type=EST; length=328bp
GATAAATGAGAGAGATCTTGCACATTCAAGGAGGCCAATGCGGCAACCAA
ATCGGCTCCAAATTCTGGGAAGTCATTTGCGACGAGCATGGCGTGGACCC
CACGGGGAAGTATAGAGGTGACGGCGTTGAGGATCTTCAACTGGAGCGAA
TCAATGTCTATTACAACGAAGCTTCCGGTGGAAGGTACGTGCCTCGAGCT
GTTCTCATGGATCTTGAACCCGGTACCATGGATAGTATCAGATCCGGCCC
GTACGGCCAGATCTTTCGACCTGATAACTTCGTTTTTGGACAATCCGGTG
CGGGCAATAACTGGGCCAAAGGTCATTA
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