CF503857

Overview
NameCF503857
Unique NameCF503857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length328
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11134 contig Csv1_Contig11134:919..1246. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB2C_HUMAN (Tubulin beta-2C chain OS=Homo sapiens GN=TUBB2C PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 1.154e-51
Identity = 91/107 (85.05%), Postives = 100/107 (93.46%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+H+Q GQCGNQIG+KFWEVI DEHG+DPTG Y GD   DLQLERINVYYNEA+GG+YVPRAVL+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDS--DLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB2C_BOVIN (Tubulin beta-2C chain OS=Bos taurus GN=TUBB2C PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 1.154e-51
Identity = 91/107 (85.05%), Postives = 100/107 (93.46%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+H+Q GQCGNQIG+KFWEVI DEHG+DPTG Y GD   DLQLERINVYYNEA+GG+YVPRAVL+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDS--DLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_PARLI (Tubulin beta chain OS=Paracentrotus lividus PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 1.507e-51
Identity = 91/107 (85.05%), Postives = 100/107 (93.46%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+H+Q GQCGNQIG+KFWEVI DEHG+DPTG Y GD   DLQLERINVYYNEA+GG+YVPRAVL+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHMQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDS--DLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB4_MOUSE (Tubulin beta-4 chain OS=Mus musculus GN=Tubb4 PE=1 SV=3)

HSP 1 Score: 200.675 bits (509), Expect = 1.969e-51
Identity = 91/107 (85.05%), Postives = 99/107 (92.52%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+H+Q GQCGNQIG+KFWEVI DEHG+DPTG Y GD   DLQLERINVYYNEA+GG YVPRAVL+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDS--DLQLERINVYYNEATGGNYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB4_MACFA (Tubulin beta-4 chain OS=Macaca fascicularis GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.969e-51
Identity = 91/107 (85.05%), Postives = 99/107 (92.52%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+H+Q GQCGNQIG+KFWEVI DEHG+DPTG Y GD   DLQLERINVYYNEA+GG YVPRAVL+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDS--DLQLERINVYYNEATGGNYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB4_HUMAN (Tubulin beta-4 chain OS=Homo sapiens GN=TUBB4 PE=1 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 1.969e-51
Identity = 91/107 (85.05%), Postives = 99/107 (92.52%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+H+Q GQCGNQIG+KFWEVI DEHG+DPTG Y GD   DLQLERINVYYNEA+GG YVPRAVL+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDS--DLQLERINVYYNEATGGNYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB4_BOVIN (Tubulin beta-4 chain OS=Bos taurus GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.969e-51
Identity = 91/107 (85.05%), Postives = 99/107 (92.52%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+H+Q GQCGNQIG+KFWEVI DEHG+DPTG Y GD   DLQLERINVYYNEA+GG YVPRAVL+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDS--DLQLERINVYYNEATGGNYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB9_ARATH (Tubulin beta-9 chain OS=Arabidopsis thaliana GN=TUBB9 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 2.571e-51
Identity = 93/107 (86.92%), Postives = 100/107 (93.46%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREILHIQGGQCGNQIG+KFWEVIC EHG+D TG+  GD   DLQLERINVY+NEASGG+YVPRAVLMDLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGD--TDLQLERINVYFNEASGGKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_PIG (Tubulin beta chain OS=Sus scrofa PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 3.358e-51
Identity = 90/107 (84.11%), Postives = 99/107 (92.52%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD   DLQLERINVYYNEA+G +YVPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDS--DLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB2_LUPAL (Tubulin beta-2 chain OS=Lupinus albus GN=TUBB2 PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 3.358e-51
Identity = 92/107 (85.98%), Postives = 99/107 (92.52%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREILHIQGGQCGNQIG+KFWEV+C EHG+D TG+Y GD V  LQLER+NVYYNEAS GR+VPRAVLMDLEPGTMDS+RSG YGQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYEGDNV--LQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGTYGQIFRPDNFVFGQSGAGNNWAKGH 105
The following BLAST results are available for this feature:
BLAST of CF503857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 402
Match NameE-valueIdentityDescription
TBB2C_HUMAN1.154e-5185.05Tubulin beta-2C chain OS=Homo sapiens GN=TUBB2C PE... [more]
TBB2C_BOVIN1.154e-5185.05Tubulin beta-2C chain OS=Bos taurus GN=TUBB2C PE=2... [more]
TBB_PARLI1.507e-5185.05Tubulin beta chain OS=Paracentrotus lividus PE=2 S... [more]
TBB4_MOUSE1.969e-5185.05Tubulin beta-4 chain OS=Mus musculus GN=Tubb4 PE=1... [more]
TBB4_MACFA1.969e-5185.05Tubulin beta-4 chain OS=Macaca fascicularis GN=TUB... [more]
TBB4_HUMAN1.969e-5185.05Tubulin beta-4 chain OS=Homo sapiens GN=TUBB4 PE=1... [more]
TBB4_BOVIN1.969e-5185.05Tubulin beta-4 chain OS=Bos taurus GN=TUBB4 PE=2 S... [more]
TBB9_ARATH2.571e-5186.92Tubulin beta-9 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB_PIG3.358e-5184.11Tubulin beta chain OS=Sus scrofa PE=1 SV=1[more]
TBB2_LUPAL3.358e-5185.98Tubulin beta-2 chain OS=Lupinus albus GN=TUBB2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-344 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503857 ID=CF503857; Name=CF503857; organism=Citrus sinensis; type=EST; length=328bp
GATAAATGAGAGAGATCTTGCACATTCAAGGAGGCCAATGCGGCAACCAA
ATCGGCTCCAAATTCTGGGAAGTCATTTGCGACGAGCATGGCGTGGACCC
CACGGGGAAGTATAGAGGTGACGGCGTTGAGGATCTTCAACTGGAGCGAA
TCAATGTCTATTACAACGAAGCTTCCGGTGGAAGGTACGTGCCTCGAGCT
GTTCTCATGGATCTTGAACCCGGTACCATGGATAGTATCAGATCCGGCCC
GTACGGCCAGATCTTTCGACCTGATAACTTCGTTTTTGGACAATCCGGTG
CGGGCAATAACTGGGCCAAAGGTCATTA
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