CF503860

Overview
NameCF503860
Unique NameCF503860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length333
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_CANAL (ATP-dependent RNA helicase eIF4A OS=Candida albicans GN=TIF1 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 7.972e-37
Identity = 68/110 (61.82%), Postives = 94/110 (85.45%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DMI+R+  +T  +K+ +LDE+DEMLS GFK+QIY+++R LP   Q+VL+SAT+P ++LE+TTKFM +PV+ILVK+DELTLEGIKQF++ VE E++KFD LCDLYD++
Sbjct:  151 RVLDMIERRYFKTDKVKMFILDEADEMLSSGFKEQIYNIFRLLPETTQIVLLSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVELEDYKFDCLCDLYDSI 260          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A8_TOBAC (Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 7.972e-37
Identity = 71/110 (64.55%), Postives = 93/110 (84.55%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DM++R++LR   +++ VLDE+DEMLSRGFKDQIYD+++ LP  +QV + SAT+P E L++T KFM  PV+ILVKRDELTLEGIKQF+V V++EEWK +TLCDLY+TL
Sbjct:  168 RVFDMLRRQSLRPDYLRMFVLDEADEMLSRGFKDQIYDIFQMLPTKVQVGVFSATMPPEALDITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETL 277          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: FAL1_KLULA (ATP-dependent RNA helicase FAL1 OS=Kluyveromyces lactis GN=FAL1 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.360e-36
Identity = 73/112 (65.18%), Postives = 93/112 (83.04%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR--GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DMIKR+ L  R  K+LVLDE+DE+L    GFK QIYD++  LPP +QVV++SAT+  +ILE+T KFM+DPVKILVKRDE++L+ IKQ++V VE+EEWKFDTLCDLYD+L
Sbjct:  151 RVLDMIKRQVLNVRNCKILVLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVKRDEISLDVIKQYYVDVEKEEWKFDTLCDLYDSL 262          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: FAL1_ASHGO (ATP-dependent RNA helicase FAL1 OS=Ashbya gossypii GN=FAL1 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.776e-36
Identity = 71/112 (63.39%), Postives = 94/112 (83.93%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR--GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DMIKR+ + TR +K+LVLDE+DE+LS   GFK Q+YD++  LP  +QVV++SAT+   +LE+T KFM+DPVKILVKRDE++LEGIKQ+ + V++EEWKFDTLCDLYD+L
Sbjct:  151 RVLDMIKRRIINTRHVKMLVLDEADELLSETLGFKQQLYDIFTKLPSSVQVVVVSATMSKVVLEVTKKFMSDPVKILVKRDEVSLEGIKQYHINVDKEEWKFDTLCDLYDSL 262          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: FAL1_YEAST (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae GN=FAL1 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.319e-36
Identity = 72/112 (64.29%), Postives = 95/112 (84.82%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR--GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DMIK++ L+TR +++LVLDE+DE+LS   GFK QIYD++  LP + QVV++SAT+  +ILE+T KFM DPVKILVKRDE++LEGIKQ+ V V++EEWKFDTLCD+YD+L
Sbjct:  152 RVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSL 263          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: FAL1_YEAS7 (ATP-dependent RNA helicase FAL1 OS=Saccharomyces cerevisiae (strain YJM789) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.319e-36
Identity = 72/112 (64.29%), Postives = 95/112 (84.82%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR--GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DMIK++ L+TR +++LVLDE+DE+LS   GFK QIYD++  LP + QVV++SAT+  +ILE+T KFM DPVKILVKRDE++LEGIKQ+ V V++EEWKFDTLCD+YD+L
Sbjct:  152 RVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYDSL 263          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: FAL1_VANPO (ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.956e-36
Identity = 72/112 (64.29%), Postives = 93/112 (83.04%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEML--SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DM KR  L TR +++L+LDE+DE+L  S GFK QIYD++  LP   QVV++SAT+  +ILE+T KFM+DPVKILVKRDE++LEGIKQ++V VE+E+WKFDTLCDLYD+L
Sbjct:  152 RVLDMFKRHLLNTRNVQMLILDEADELLGESLGFKQQIYDIFTKLPAACQVVVVSATMSKDILEVTKKFMSDPVKILVKRDEISLEGIKQYYVNVEKEDWKFDTLCDLYDSL 263          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_LODEL (ATP-dependent RNA helicase eIF4A OS=Lodderomyces elongisporus GN=TIF1 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.748e-36
Identity = 69/110 (62.73%), Postives = 93/110 (84.55%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DMI+R+  RT  +K+ +LDE+DEMLS GFK+QIY+++R LP   QVVL+SAT+P ++LE+TTKFM +PV+ILVK+DELTLEGIKQ+F+ VE E++KFD L DLYD++
Sbjct:  151 RVFDMIERRYFRTDKVKMFILDEADEMLSSGFKEQIYNIFRLLPETTQVVLLSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQYFINVEVEDYKFDCLVDLYDSI 260          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_YEAST (ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae GN=TIF1 PE=1 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 1.964e-35
Identity = 69/110 (62.73%), Postives = 92/110 (83.64%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV D I+R+  RT  IK+ +LDE+DEMLS GFK+QIY ++  LPP  QVVL+SAT+P+++LE+TTKFM +PV+ILVK+DELTLEGIKQF+V VE EE+K++ L DLYD++
Sbjct:  149 RVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSI 258          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_YEAS7 (ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae (strain YJM789) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.964e-35
Identity = 69/110 (62.73%), Postives = 92/110 (83.64%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV D I+R+  RT  IK+ +LDE+DEMLS GFK+QIY ++  LPP  QVVL+SAT+P+++LE+TTKFM +PV+ILVK+DELTLEGIKQF+V VE EE+K++ L DLYD++
Sbjct:  149 RVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSI 258          
The following BLAST results are available for this feature:
BLAST of CF503860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
IF4A_CANAL7.972e-3761.82ATP-dependent RNA helicase eIF4A OS=Candida albica... [more]
IF4A8_TOBAC7.972e-3764.55Eukaryotic initiation factor 4A-8 OS=Nicotiana tab... [more]
FAL1_KLULA1.360e-3665.18ATP-dependent RNA helicase FAL1 OS=Kluyveromyces l... [more]
FAL1_ASHGO1.776e-3663.39ATP-dependent RNA helicase FAL1 OS=Ashbya gossypii... [more]
FAL1_YEAST2.319e-3664.29ATP-dependent RNA helicase FAL1 OS=Saccharomyces c... [more]
FAL1_YEAS72.319e-3664.29ATP-dependent RNA helicase FAL1 OS=Saccharomyces c... [more]
FAL1_VANPO3.956e-3664.29ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma... [more]
IF4A_LODEL6.748e-3662.73ATP-dependent RNA helicase eIF4A OS=Lodderomyces e... [more]
IF4A_YEAST1.964e-3562.73ATP-dependent RNA helicase eIF4A OS=Saccharomyces ... [more]
IF4A_YEAS71.964e-3562.73ATP-dependent RNA helicase eIF4A OS=Saccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-347 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503860 ID=CF503860; Name=CF503860; organism=Citrus sinensis; type=EST; length=333bp
GTAGAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATT
AAATTATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAA
GGATCAAATTTATGATGTGTACCGTTATCTTCCACCGGATCTTCAGGTTG
TTTTGATATCTGCCACCCTTCCTCACGAAATATTGGAGATGACGACCAAA
TTCATGACAGATCCTGTAAAGATTCTTGTGAAGCGTGATGAGTTGACTTT
GGAGGGAATCAAGCAATTTTTTGTTGCAGTGGAAAGAGAGGAGTGGAAGT
TTGATACACTCTGTGATCTTTATGATACCCTTA
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