CF503860

Overview
NameCF503860
Unique NameCF503860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length333
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_YARLI (ATP-dependent RNA helicase eIF4A OS=Yarrowia lipolytica GN=TIF1 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.564e-35
Identity = 68/110 (61.82%), Postives = 91/110 (82.73%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            R+ DMI+R+ L+T  IK+ +LDE+DEMLSR FKD IYD++  LP   Q VL+SAT+P E+L++T KFM DPV+ILVK+DELTLEGIKQF++ VE+E +KF+ LCDLY+T+
Sbjct:  150 RIHDMIERRILKTDLIKMFILDEADEMLSREFKDPIYDIFTTLPETTQTVLLSATMPAEVLDITGKFMRDPVRILVKKDELTLEGIKQFYIDVEQESYKFEVLCDLYETI 259          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_CRYNE (ATP-dependent RNA helicase eIF4A OS=Cryptococcus neoformans GN=TIF1 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.564e-35
Identity = 66/110 (60.00%), Postives = 91/110 (82.73%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DMI R  L+T A+ +  LDE+DEMLS GFK+ IY++++ LP + QVVL+SAT+  E+L++T KFM DP++ILVK+DELTLEGI+QF++ VE+EEWK +TLCDLY+T+
Sbjct:  156 RVFDMINRGALKTEAVMMFCLDEADEMLSTGFKESIYEIFQLLPGETQVVLLSATMAPEVLDVTKKFMRDPIRILVKKDELTLEGIRQFYINVEKEEWKLETLCDLYETV 265          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_CRYPV (Eukaryotic initiation factor 4A OS=Cryptosporidium parvum GN=EIF4-A PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.349e-35
Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DM+ +  LR   +KL +LDE+DEMLSRGFK QI+D+++ LP D+QV L SAT+P+EIL +TT+FM DP +ILVK++ELTLEGI+QF+V VE++EWK DTL DLY+TL
Sbjct:  159 RVFDMLDKGYLRVDNLKLFILDEADEMLSRGFKVQIHDIFKKLPQDVQVALFSATMPNEILHLTTQFMRDPKRILVKQEELTLEGIRQFYVGVEKDEWKMDTLIDLYETL 268          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_TRYBB (Probable eukaryotic initiation factor 4A OS=Trypanosoma brucei brucei GN=Tb09.160.3270 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.461e-35
Identity = 69/110 (62.73%), Postives = 92/110 (83.64%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV D+ KR  +RT ++++LVLDE+DEMLS+GF +QIYD++R+LP ++QV L SAT+P ++LE+T KFM DP +ILVKR+ LTLEGIKQFF+AVE EE K DTL DLY+T+
Sbjct:  158 RVVDVTKRGAMRTESLRVLVLDEADEMLSQGFAEQIYDIFRFLPKEIQVALFSATMPDDVLELTKKFMRDPTRILVKRESLTLEGIKQFFIAVE-EEHKLDTLMDLYETV 266          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_VANPO (ATP-dependent RNA helicase eIF4A OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.662e-34
Identity = 67/110 (60.91%), Postives = 90/110 (81.82%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV D I+R   +T  IK+ +LDE+DEMLS GF++QIY ++  LPP  QVVL+SATLP ++LE+TTKFM +P++ILVK+DELTLEGIKQF++ VE E++KFD L DLYD++
Sbjct:  150 RVSDNIQRHRFKTDNIKMFILDEADEMLSSGFREQIYQIFTMLPPTTQVVLLSATLPGDVLEVTTKFMRNPIRILVKKDELTLEGIKQFYINVEEEQYKFDCLSDLYDSI 259          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_KLULA (ATP-dependent RNA helicase eIF4A OS=Kluyveromyces lactis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.835e-34
Identity = 67/110 (60.91%), Postives = 91/110 (82.73%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DMI R+  +T  IK+ +LDE+DEMLS GFK+QIY+++  LPP  QVVL+SAT+P ++LE+T+KFM DPV+ILVK+DELTLEGI Q++V VE E++K+D L DLYD++
Sbjct:  150 RVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSI 259          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_TRYCR (Probable eukaryotic initiation factor 4A OS=Trypanosoma cruzi GN=Tc00.1047053511585.190 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.703e-34
Identity = 68/110 (61.82%), Postives = 91/110 (82.73%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV D+ KR  +RT  +++LVLDE+DEMLS+GF +QIY+++RYLP ++QV L SAT+P ++LE+T KFM DP +ILVKR+ LTLEGIKQ+F+AVE EE K DTL DLY+T+
Sbjct:  158 RVVDVTKRGAMRTEHLRVLVLDEADEMLSQGFAEQIYEIFRYLPKEIQVALFSATMPDDVLELTKKFMRDPTRILVKRESLTLEGIKQYFIAVE-EEHKLDTLMDLYETV 266          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_CANGA (ATP-dependent RNA helicase eIF4A OS=Candida glabrata GN=TIF1 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.077e-33
Identity = 66/110 (60.00%), Postives = 89/110 (80.91%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV D I+R+  +   IK+ +LDE+DEMLS GFK+QIY ++  LPP  QVVL+SAT+P ++LE+T KFM +PV+ILVK+DELTLEGIKQF+V VE E++K+D L DLYD++
Sbjct:  150 RVFDNIQRRKFKVDNIKMFILDEADEMLSTGFKEQIYQIFTMLPPTTQVVLLSATMPRDVLEVTAKFMQNPVRILVKKDELTLEGIKQFYVNVEEEQFKYDCLTDLYDSI 259          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_ASHGO (ATP-dependent RNA helicase eIF4A OS=Ashbya gossypii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.838e-33
Identity = 65/110 (59.09%), Postives = 89/110 (80.91%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DMI+R+  +T  IK+ +LDE+DEMLS GFK+QIY ++  LPP  QVVL+SAT+P E+L++T KFM  PV+ILVK+D LTLEGI+Q+++ VE EE+K+D L DLYD++
Sbjct:  150 RVFDMIERRNFKTDHIKMFILDEADEMLSSGFKEQIYKIFTMLPPTTQVVLLSATMPKEVLDVTDKFMNKPVRILVKKDALTLEGIQQYYINVESEEYKYDCLSDLYDSI 259          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A2_ORYSJ (Putative eukaryotic initiation factor 4A-2 OS=Oryza sativa subsp. japonica GN=Os02g0221300 PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 6.132e-21
Identity = 55/111 (49.55%), Postives = 76/111 (68.47%), Query Frame = 3
Query:    6 VCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGI--KQFFVAVEREEWKFDTLCDLYDTL 332
            V  M++ + L    I++ VLDE+DE+L RGFKDQI+ + ++LP   Q    SA++ HE LEM  K+M  PV+I+V RDE  LEGI  KQF+V VE+E+ K D LC L+DT+
Sbjct:  175 VLGMLQGRALCPDHIRMFVLDEADEVL-RGFKDQIHGIIQFLPTKTQFGFFSASMSHEALEMCRKYMNKPVEIIVPRDE-ELEGINVKQFYVNVEKEDCKLDKLCGLFDTM 283          
The following BLAST results are available for this feature:
BLAST of CF503860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
IF4A_YARLI2.564e-3561.82ATP-dependent RNA helicase eIF4A OS=Yarrowia lipol... [more]
IF4A_CRYNE2.564e-3560.00ATP-dependent RNA helicase eIF4A OS=Cryptococcus n... [more]
IF4A_CRYPV3.349e-3562.73Eukaryotic initiation factor 4A OS=Cryptosporidium... [more]
IF4A_TRYBB7.461e-3562.73Probable eukaryotic initiation factor 4A OS=Trypan... [more]
IF4A_VANPO1.662e-3460.91ATP-dependent RNA helicase eIF4A OS=Vanderwaltozym... [more]
IF4A_KLULA2.835e-3460.91ATP-dependent RNA helicase eIF4A OS=Kluyveromyces ... [more]
IF4A_TRYCR3.703e-3461.82Probable eukaryotic initiation factor 4A OS=Trypan... [more]
IF4A_CANGA1.077e-3360.00ATP-dependent RNA helicase eIF4A OS=Candida glabra... [more]
IF4A_ASHGO1.838e-3359.09ATP-dependent RNA helicase eIF4A OS=Ashbya gossypi... [more]
IF4A2_ORYSJ6.132e-2149.55Putative eukaryotic initiation factor 4A-2 OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-347 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503860 ID=CF503860; Name=CF503860; organism=Citrus sinensis; type=EST; length=333bp
GTAGAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATT
AAATTATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAA
GGATCAAATTTATGATGTGTACCGTTATCTTCCACCGGATCTTCAGGTTG
TTTTGATATCTGCCACCCTTCCTCACGAAATATTGGAGATGACGACCAAA
TTCATGACAGATCCTGTAAAGATTCTTGTGAAGCGTGATGAGTTGACTTT
GGAGGGAATCAAGCAATTTTTTGTTGCAGTGGAAAGAGAGGAGTGGAAGT
TTGATACACTCTGTGATCTTTATGATACCCTTA
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