CF503860
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_YARLI (ATP-dependent RNA helicase eIF4A OS=Yarrowia lipolytica GN=TIF1 PE=3 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 2.564e-35 Identity = 68/110 (61.82%), Postives = 91/110 (82.73%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 R+ DMI+R+ L+T IK+ +LDE+DEMLSR FKD IYD++ LP Q VL+SAT+P E+L++T KFM DPV+ILVK+DELTLEGIKQF++ VE+E +KF+ LCDLY+T+ Sbjct: 150 RIHDMIERRILKTDLIKMFILDEADEMLSREFKDPIYDIFTTLPETTQTVLLSATMPAEVLDITGKFMRDPVRILVKKDELTLEGIKQFYIDVEQESYKFEVLCDLYETI 259
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_CRYNE (ATP-dependent RNA helicase eIF4A OS=Cryptococcus neoformans GN=TIF1 PE=3 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 2.564e-35 Identity = 66/110 (60.00%), Postives = 91/110 (82.73%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 RV DMI R L+T A+ + LDE+DEMLS GFK+ IY++++ LP + QVVL+SAT+ E+L++T KFM DP++ILVK+DELTLEGI+QF++ VE+EEWK +TLCDLY+T+ Sbjct: 156 RVFDMINRGALKTEAVMMFCLDEADEMLSTGFKESIYEIFQLLPGETQVVLLSATMAPEVLDVTKKFMRDPIRILVKKDELTLEGIRQFYINVEKEEWKLETLCDLYETV 265
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_CRYPV (Eukaryotic initiation factor 4A OS=Cryptosporidium parvum GN=EIF4-A PE=2 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 3.349e-35 Identity = 69/110 (62.73%), Postives = 91/110 (82.73%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 RV DM+ + LR +KL +LDE+DEMLSRGFK QI+D+++ LP D+QV L SAT+P+EIL +TT+FM DP +ILVK++ELTLEGI+QF+V VE++EWK DTL DLY+TL Sbjct: 159 RVFDMLDKGYLRVDNLKLFILDEADEMLSRGFKVQIHDIFKKLPQDVQVALFSATMPNEILHLTTQFMRDPKRILVKQEELTLEGIRQFYVGVEKDEWKMDTLIDLYETL 268
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_TRYBB (Probable eukaryotic initiation factor 4A OS=Trypanosoma brucei brucei GN=Tb09.160.3270 PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 7.461e-35 Identity = 69/110 (62.73%), Postives = 92/110 (83.64%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 RV D+ KR +RT ++++LVLDE+DEMLS+GF +QIYD++R+LP ++QV L SAT+P ++LE+T KFM DP +ILVKR+ LTLEGIKQFF+AVE EE K DTL DLY+T+ Sbjct: 158 RVVDVTKRGAMRTESLRVLVLDEADEMLSQGFAEQIYDIFRFLPKEIQVALFSATMPDDVLELTKKFMRDPTRILVKRESLTLEGIKQFFIAVE-EEHKLDTLMDLYETV 266
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_VANPO (ATP-dependent RNA helicase eIF4A OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=TIF1 PE=3 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 1.662e-34 Identity = 67/110 (60.91%), Postives = 90/110 (81.82%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 RV D I+R +T IK+ +LDE+DEMLS GF++QIY ++ LPP QVVL+SATLP ++LE+TTKFM +P++ILVK+DELTLEGIKQF++ VE E++KFD L DLYD++ Sbjct: 150 RVSDNIQRHRFKTDNIKMFILDEADEMLSSGFREQIYQIFTMLPPTTQVVLLSATLPGDVLEVTTKFMRNPIRILVKKDELTLEGIKQFYINVEEEQYKFDCLSDLYDSI 259
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_KLULA (ATP-dependent RNA helicase eIF4A OS=Kluyveromyces lactis GN=TIF1 PE=3 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 2.835e-34 Identity = 67/110 (60.91%), Postives = 91/110 (82.73%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 RV DMI R+ +T IK+ +LDE+DEMLS GFK+QIY+++ LPP QVVL+SAT+P ++LE+T+KFM DPV+ILVK+DELTLEGI Q++V VE E++K+D L DLYD++ Sbjct: 150 RVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIFTMLPPTSQVVLLSATMPGDVLEVTSKFMKDPVRILVKKDELTLEGIGQYYVNVEEEQYKYDCLTDLYDSI 259
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_TRYCR (Probable eukaryotic initiation factor 4A OS=Trypanosoma cruzi GN=Tc00.1047053511585.190 PE=3 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 3.703e-34 Identity = 68/110 (61.82%), Postives = 91/110 (82.73%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 RV D+ KR +RT +++LVLDE+DEMLS+GF +QIY+++RYLP ++QV L SAT+P ++LE+T KFM DP +ILVKR+ LTLEGIKQ+F+AVE EE K DTL DLY+T+ Sbjct: 158 RVVDVTKRGAMRTEHLRVLVLDEADEMLSQGFAEQIYEIFRYLPKEIQVALFSATMPDDVLELTKKFMRDPTRILVKRESLTLEGIKQYFIAVE-EEHKLDTLMDLYETV 266
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_CANGA (ATP-dependent RNA helicase eIF4A OS=Candida glabrata GN=TIF1 PE=3 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 1.077e-33 Identity = 66/110 (60.00%), Postives = 89/110 (80.91%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 RV D I+R+ + IK+ +LDE+DEMLS GFK+QIY ++ LPP QVVL+SAT+P ++LE+T KFM +PV+ILVK+DELTLEGIKQF+V VE E++K+D L DLYD++ Sbjct: 150 RVFDNIQRRKFKVDNIKMFILDEADEMLSTGFKEQIYQIFTMLPPTTQVVLLSATMPRDVLEVTAKFMQNPVRILVKKDELTLEGIKQFYVNVEEEQFKYDCLTDLYDSI 259
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_ASHGO (ATP-dependent RNA helicase eIF4A OS=Ashbya gossypii GN=TIF1 PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 1.838e-33 Identity = 65/110 (59.09%), Postives = 89/110 (80.91%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 RV DMI+R+ +T IK+ +LDE+DEMLS GFK+QIY ++ LPP QVVL+SAT+P E+L++T KFM PV+ILVK+D LTLEGI+Q+++ VE EE+K+D L DLYD++ Sbjct: 150 RVFDMIERRNFKTDHIKMFILDEADEMLSSGFKEQIYKIFTMLPPTTQVVLLSATMPKEVLDVTDKFMNKPVRILVKKDALTLEGIQQYYINVESEEYKYDCLSDLYDSI 259
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A2_ORYSJ (Putative eukaryotic initiation factor 4A-2 OS=Oryza sativa subsp. japonica GN=Os02g0221300 PE=3 SV=2) HSP 1 Score: 99.3673 bits (246), Expect = 6.132e-21 Identity = 55/111 (49.55%), Postives = 76/111 (68.47%), Query Frame = 3 Query: 6 VCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGI--KQFFVAVEREEWKFDTLCDLYDTL 332 V M++ + L I++ VLDE+DE+L RGFKDQI+ + ++LP Q SA++ HE LEM K+M PV+I+V RDE LEGI KQF+V VE+E+ K D LC L+DT+ Sbjct: 175 VLGMLQGRALCPDHIRMFVLDEADEVL-RGFKDQIHGIIQFLPTKTQFGFFSASMSHEALEMCRKYMNKPVEIIVPRDE-ELEGINVKQFYVNVEKEDCKLDKLCGLFDTM 283 The following BLAST results are available for this feature:
BLAST of CF503860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 238
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Sequences
The
following sequences are available for this feature:
EST sequence >CF503860 ID=CF503860; Name=CF503860; organism=Citrus sinensis; type=EST; length=333bpback to top |