CF503860
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_PICST (ATP-dependent RNA helicase DBP5 OS=Pichia stipitis GN=DBP5 PE=3 SV=2) HSP 1 Score: 87.4261 bits (215), Expect = 2.411e-17 Identity = 44/110 (40.00%), Postives = 70/110 (63.64%), Query Frame = 3 Query: 6 VCDMIKRKTLRTRAIKLLVLDESDEML-SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 V D+I+RK + +K+ VLDE+D ML ++G DQ V R LP Q+VL SAT P ++ + KF+ + + +K++EL ++GIKQ ++ + E+ KF+ LC+LY L Sbjct: 237 VMDLIRRKQINVNGVKVFVLDEADNMLDAQGLGDQCVRVKRTLPKTTQLVLFSATFPTKVRQYAEKFVPNANSLELKQEELNVDGIKQLYMDCDSEKHKFEVLCELYGLL 346
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_ASPNC (ATP-dependent RNA helicase dbp5 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp5 PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 2.411e-17 Identity = 48/110 (43.64%), Postives = 68/110 (61.82%), Query Frame = 3 Query: 6 VCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 V DMIKR+ + +++LVLDE+D ML + G DQ V LP D+QVVL SAT P + E +KF +I ++ +ELT+EGIKQ ++ +E K+ TL +LY L Sbjct: 207 VMDMIKRRIMIANKLRVLVLDEADNMLDQQGLGDQCIRVKALLPRDIQVVLFSATFPAHVHEYASKFAPQANEITLQHEELTVEGIKQLYLDCSNDEDKYQTLVNLYGLL 316
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: CSHA_BACSU (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus subtilis GN=cshA PE=1 SV=2) HSP 1 Score: 87.4261 bits (215), Expect = 2.411e-17 Identity = 45/108 (41.67%), Postives = 68/108 (62.96%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 326 R+ D I R+T+R + +V+DE+DEML+ GF D I + +P + Q +L SAT+P I + +FMT+P + VK E+T+ I+QF++ V+ E KFDTL L D Sbjct: 131 RLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQ-ERKKFDTLTRLLD 237
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_LODEL (ATP-dependent RNA helicase DBP5 OS=Lodderomyces elongisporus GN=DBP5 PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 4.113e-17 Identity = 44/110 (40.00%), Postives = 69/110 (62.73%), Query Frame = 3 Query: 6 VCDMIKRKTLRTRAIKLLVLDESDEML-SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 V D+I RK + +K+ VLDE+D ML ++G D V + LP D Q+VL SAT P E+ + KF+ + + +K++EL ++GIKQ ++ + +E KF+ LC+LY L Sbjct: 243 VHDLINRKAINVAKVKVFVLDEADNMLDAQGLADTCLRVKKRLPRDCQLVLFSATFPTEVRKYAEKFVPNANSLALKQEELNVKGIKQLYMDCKNQEHKFEVLCELYGLL 352
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: CSHA_BACLD (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=cshA PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 4.113e-17 Identity = 45/108 (41.67%), Postives = 68/108 (62.96%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 326 R+ D I R+T+R + + +VLDE+DEML+ GF + I + +P + Q +L SAT+P I + +FMT+P + VK E+T+ I+QF++ V E KFDTL L D Sbjct: 131 RLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQTLLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEV-HERKKFDTLTRLLD 237
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: CSHA_BACHK (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus thuringiensis subsp. konkukian GN=cshA PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 4.113e-17 Identity = 47/108 (43.52%), Postives = 69/108 (63.89%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 326 R+ D I RKTLR + ++ +VLDE+DEML+ GF + I + +P Q +L SAT+P I + +FMT+P I VK E+T+ I+QF++ V+ E+ KFD L L D Sbjct: 130 RILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQ-EKKKFDVLTRLLD 236
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: CSHA_BACCZ (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ZK / E33L) GN=cshA PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 4.113e-17 Identity = 47/108 (43.52%), Postives = 69/108 (63.89%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 326 R+ D I RKTLR + ++ +VLDE+DEML+ GF + I + +P Q +L SAT+P I + +FMT+P I VK E+T+ I+QF++ V+ E+ KFD L L D Sbjct: 130 RILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQ-EKKKFDVLTRLLD 236
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: CSHA_BACCR (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=cshA PE=3 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 4.113e-17 Identity = 47/108 (43.52%), Postives = 69/108 (63.89%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 326 R+ D I RKTLR + ++ +VLDE+DEML+ GF + I + +P Q +L SAT+P I + +FMT+P I VK E+T+ I+QF++ V+ E+ KFD L L D Sbjct: 130 RILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQ-EKKKFDVLTRLLD 236
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: CSHA_BACC1 (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ATCC 10987) GN=cshA PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 4.113e-17 Identity = 47/108 (43.52%), Postives = 69/108 (63.89%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 326 R+ D I RKTLR + ++ +VLDE+DEML+ GF + I + +P Q +L SAT+P I + +FMT+P I VK E+T+ I+QF++ V+ E+ KFD L L D Sbjct: 130 RILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQ-EKKKFDVLTRLLD 236
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: CSHA_BACAN (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus anthracis GN=cshA PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 4.113e-17 Identity = 47/108 (43.52%), Postives = 69/108 (63.89%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 326 R+ D I RKTLR + ++ +VLDE+DEML+ GF + I + +P Q +L SAT+P I + +FMT+P I VK E+T+ I+QF++ V+ E+ KFD L L D Sbjct: 130 RILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQ-EKKKFDVLTRLLD 236 The following BLAST results are available for this feature:
BLAST of CF503860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 238
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF503860 ID=CF503860; Name=CF503860; organism=Citrus sinensis; type=EST; length=333bpback to top |