CF503860

Overview
NameCF503860
Unique NameCF503860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length333
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_PICST (ATP-dependent RNA helicase DBP5 OS=Pichia stipitis GN=DBP5 PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.411e-17
Identity = 44/110 (40.00%), Postives = 70/110 (63.64%), Query Frame = 3
Query:    6 VCDMIKRKTLRTRAIKLLVLDESDEML-SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            V D+I+RK +    +K+ VLDE+D ML ++G  DQ   V R LP   Q+VL SAT P ++ +   KF+ +   + +K++EL ++GIKQ ++  + E+ KF+ LC+LY  L
Sbjct:  237 VMDLIRRKQINVNGVKVFVLDEADNMLDAQGLGDQCVRVKRTLPKTTQLVLFSATFPTKVRQYAEKFVPNANSLELKQEELNVDGIKQLYMDCDSEKHKFEVLCELYGLL 346          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_ASPNC (ATP-dependent RNA helicase dbp5 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp5 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.411e-17
Identity = 48/110 (43.64%), Postives = 68/110 (61.82%), Query Frame = 3
Query:    6 VCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            V DMIKR+ +    +++LVLDE+D ML + G  DQ   V   LP D+QVVL SAT P  + E  +KF     +I ++ +ELT+EGIKQ ++    +E K+ TL +LY  L
Sbjct:  207 VMDMIKRRIMIANKLRVLVLDEADNMLDQQGLGDQCIRVKALLPRDIQVVLFSATFPAHVHEYASKFAPQANEITLQHEELTVEGIKQLYLDCSNDEDKYQTLVNLYGLL 316          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: CSHA_BACSU (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus subtilis GN=cshA PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.411e-17
Identity = 45/108 (41.67%), Postives = 68/108 (62.96%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 326
            R+ D I R+T+R   +  +V+DE+DEML+ GF D I  +   +P + Q +L SAT+P  I  +  +FMT+P  + VK  E+T+  I+QF++ V+ E  KFDTL  L D
Sbjct:  131 RLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQ-ERKKFDTLTRLLD 237          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_LODEL (ATP-dependent RNA helicase DBP5 OS=Lodderomyces elongisporus GN=DBP5 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.113e-17
Identity = 44/110 (40.00%), Postives = 69/110 (62.73%), Query Frame = 3
Query:    6 VCDMIKRKTLRTRAIKLLVLDESDEML-SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            V D+I RK +    +K+ VLDE+D ML ++G  D    V + LP D Q+VL SAT P E+ +   KF+ +   + +K++EL ++GIKQ ++  + +E KF+ LC+LY  L
Sbjct:  243 VHDLINRKAINVAKVKVFVLDEADNMLDAQGLADTCLRVKKRLPRDCQLVLFSATFPTEVRKYAEKFVPNANSLALKQEELNVKGIKQLYMDCKNQEHKFEVLCELYGLL 352          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: CSHA_BACLD (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=cshA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.113e-17
Identity = 45/108 (41.67%), Postives = 68/108 (62.96%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 326
            R+ D I R+T+R + +  +VLDE+DEML+ GF + I  +   +P + Q +L SAT+P  I  +  +FMT+P  + VK  E+T+  I+QF++ V  E  KFDTL  L D
Sbjct:  131 RLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQTLLFSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEV-HERKKFDTLTRLLD 237          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: CSHA_BACHK (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus thuringiensis subsp. konkukian GN=cshA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.113e-17
Identity = 47/108 (43.52%), Postives = 69/108 (63.89%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 326
            R+ D I RKTLR + ++ +VLDE+DEML+ GF + I  +   +P   Q +L SAT+P  I  +  +FMT+P  I VK  E+T+  I+QF++ V+ E+ KFD L  L D
Sbjct:  130 RILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQ-EKKKFDVLTRLLD 236          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: CSHA_BACCZ (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ZK / E33L) GN=cshA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.113e-17
Identity = 47/108 (43.52%), Postives = 69/108 (63.89%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 326
            R+ D I RKTLR + ++ +VLDE+DEML+ GF + I  +   +P   Q +L SAT+P  I  +  +FMT+P  I VK  E+T+  I+QF++ V+ E+ KFD L  L D
Sbjct:  130 RILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQ-EKKKFDVLTRLLD 236          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: CSHA_BACCR (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=cshA PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.113e-17
Identity = 47/108 (43.52%), Postives = 69/108 (63.89%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 326
            R+ D I RKTLR + ++ +VLDE+DEML+ GF + I  +   +P   Q +L SAT+P  I  +  +FMT+P  I VK  E+T+  I+QF++ V+ E+ KFD L  L D
Sbjct:  130 RILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQ-EKKKFDVLTRLLD 236          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: CSHA_BACC1 (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ATCC 10987) GN=cshA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.113e-17
Identity = 47/108 (43.52%), Postives = 69/108 (63.89%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 326
            R+ D I RKTLR + ++ +VLDE+DEML+ GF + I  +   +P   Q +L SAT+P  I  +  +FMT+P  I VK  E+T+  I+QF++ V+ E+ KFD L  L D
Sbjct:  130 RILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQ-EKKKFDVLTRLLD 236          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: CSHA_BACAN (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus anthracis GN=cshA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.113e-17
Identity = 47/108 (43.52%), Postives = 69/108 (63.89%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 326
            R+ D I RKTLR + ++ +VLDE+DEML+ GF + I  +   +P   Q +L SAT+P  I  +  +FMT+P  I VK  E+T+  I+QF++ V+ E+ KFD L  L D
Sbjct:  130 RILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQ-EKKKFDVLTRLLD 236          
The following BLAST results are available for this feature:
BLAST of CF503860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
DBP5_PICST2.411e-1740.00ATP-dependent RNA helicase DBP5 OS=Pichia stipitis... [more]
DBP5_ASPNC2.411e-1743.64ATP-dependent RNA helicase dbp5 OS=Aspergillus nig... [more]
CSHA_BACSU2.411e-1741.67DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
DBP5_LODEL4.113e-1740.00ATP-dependent RNA helicase DBP5 OS=Lodderomyces el... [more]
CSHA_BACLD4.113e-1741.67DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACHK4.113e-1743.52DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACCZ4.113e-1743.52DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACCR4.113e-1743.52DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACC14.113e-1743.52DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACAN4.113e-1743.52DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-347 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503860 ID=CF503860; Name=CF503860; organism=Citrus sinensis; type=EST; length=333bp
GTAGAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATT
AAATTATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAA
GGATCAAATTTATGATGTGTACCGTTATCTTCCACCGGATCTTCAGGTTG
TTTTGATATCTGCCACCCTTCCTCACGAAATATTGGAGATGACGACCAAA
TTCATGACAGATCCTGTAAAGATTCTTGTGAAGCGTGATGAGTTGACTTT
GGAGGGAATCAAGCAATTTTTTGTTGCAGTGGAAAGAGAGGAGTGGAAGT
TTGATACACTCTGTGATCTTTATGATACCCTTA
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