CF503860

Overview
NameCF503860
Unique NameCF503860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length333
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DD19A_HUMAN (ATP-dependent RNA helicase DDX19A OS=Homo sapiens GN=DDX19A PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.617e-13
Identity = 40/105 (38.10%), Postives = 63/105 (60.00%), Query Frame = 3
Query:   21 KRKTLRTRAIKLLVLDESDEMLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            K K +  + IK+ VLDE+D M++ +G +DQ   + R LP + Q++L SAT    + +   K + DP  I +KR+E TL+ IKQ++V     + KF  LC+LY  +
Sbjct:  226 KLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAI 330          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_CANGA (ATP-dependent RNA helicase DBP5 OS=Candida glabrata GN=DBP5 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.617e-13
Identity = 38/108 (35.19%), Postives = 65/108 (60.19%), Query Frame = 3
Query:   12 DMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            D+I+RK ++ + +K+ VLDE+D ML + G  DQ   V ++LP D Q+VL SAT    +     K + +   + ++R+E+ ++ IKQ ++    E  K++ LC+LY  L
Sbjct:  243 DLIRRKLIQLQNVKIFVLDEADNMLDKQGLGDQCIRVKKFLPKDTQLVLFSATFADAVKAYAQKVIPNANTLELQRNEVNVKAIKQLYMDCNDEAHKYEVLCELYGLL 350          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_YEAST (ATP-dependent RNA helicase DBP5 OS=Saccharomyces cerevisiae GN=DBP5 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.112e-13
Identity = 39/107 (36.45%), Postives = 65/107 (60.75%), Query Frame = 3
Query:    6 VCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 323
            V D+++RK ++ + IK+ VLDE+D ML + G  DQ   V R+LP D Q+VL SAT    + +   K + +   + ++ +E+ ++ IKQ ++  + E  KFD L +LY
Sbjct:  219 VLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELY 325          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_YEAS7 (ATP-dependent RNA helicase DBP5 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP5 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.112e-13
Identity = 39/107 (36.45%), Postives = 65/107 (60.75%), Query Frame = 3
Query:    6 VCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 323
            V D+++RK ++ + IK+ VLDE+D ML + G  DQ   V R+LP D Q+VL SAT    + +   K + +   + ++ +E+ ++ IKQ ++  + E  KFD L +LY
Sbjct:  219 VLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELY 325          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DDX25_BOVIN (ATP-dependent RNA helicase DDX25 OS=Bos taurus GN=DDX25 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.759e-13
Identity = 36/102 (35.29%), Postives = 63/102 (61.76%), Query Frame = 3
Query:   21 KRKTLRTRAIKLLVLDESDEML-SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 323
            KRK +    I++ VLDE+D M+ ++GF+DQ   + R LP + Q++L SAT    + +   + + DP  I ++++ELTL  I+Q++V     + K+  LC++Y
Sbjct:  232 KRKLIDLTKIRVFVLDEADVMIDTQGFEDQSIRIQRALPSECQMLLFSATFEDSVWQFAERIIPDPNVIKLRKEELTLNNIRQYYVLCGNRKDKYQALCNIY 333          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBPA_BACSU (ATP-dependent RNA helicase dbpA OS=Bacillus subtilis GN=dbpA PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.759e-13
Identity = 43/109 (39.45%), Postives = 66/109 (60.55%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT 329
            RV D I++ TL    +  LV+DE+DEML+ GF +Q+  + ++LP +   +L SATLP +I +++ ++M +P  I VK   LT   I+   + V REE KF  L D+  T
Sbjct:  130 RVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERTTMLFSATLPQDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQV-REENKFSLLKDVLMT 237          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DD19A_BOVIN (ATP-dependent RNA helicase DDX19A OS=Bos taurus GN=DDX19A PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.603e-13
Identity = 39/105 (37.14%), Postives = 63/105 (60.00%), Query Frame = 3
Query:   21 KRKTLRTRAIKLLVLDESDEMLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            K K +  + IK+ VLDE+D M++ +G +DQ   + R LP + Q++L SAT    + +   K + DP  I +KR+E TL+ IKQ++V     + KF  LC++Y  +
Sbjct:  226 KLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNSRDEKFQALCNIYGAI 330          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_YARLI (ATP-dependent RNA helicase DBP5 OS=Yarrowia lipolytica GN=DBP5 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.146e-13
Identity = 37/109 (33.94%), Postives = 61/109 (55.96%), Query Frame = 3
Query:    6 VCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            V  ++++K +  + +K+ VLDE+D M+          + +YLP   QVVL SAT P  +L++  K   +P +I +K +EL ++ I Q ++  E  E KF  L +LY  L
Sbjct:  226 VAGLLQKKQIDAKHVKVFVLDEADNMVDSSMGSTCARIKKYLPSSTQVVLFSATFPESVLDLAGKMCPNPNEIRLKANELNVDAITQLYMDCEDGEEKFKMLEELYSML 334          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DDX59_HUMAN (Probable ATP-dependent RNA helicase DDX59 OS=Homo sapiens GN=DDX59 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.027e-13
Identity = 31/94 (32.98%), Postives = 59/94 (62.77%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVE 284
            R+ D+IK+ ++    +K++V+DE+D ML  GF+ Q+ D+   +P D Q +L+SAT+P  I ++ ++ + +PV+I+     L    ++Q  + VE
Sbjct:  332 RLLDIIKQSSVELCGVKIVVVDEADTMLKMGFQQQVLDILENIPNDCQTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVE 425          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_SCLS1 (ATP-dependent RNA helicase dbp5 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp5 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.048e-12
Identity = 43/107 (40.19%), Postives = 62/107 (57.94%), Query Frame = 3
Query:    6 VCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 323
            V D+IKRK++    +K+L LDE+D ML + G  DQ   V   +  + Q++L SAT P E+     +F     +I +KRDELT+ GIKQ F+    E  K++ L  LY
Sbjct:  198 VMDLIKRKSIDASQMKVLCLDEADNMLDQQGLGDQCLRVKSMIKVE-QILLFSATFPDEVYGFAQQFSPRANEIKLKRDELTVSGIKQMFMDCPNEVGKYEILVKLY 303          
The following BLAST results are available for this feature:
BLAST of CF503860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
DD19A_HUMAN1.617e-1338.10ATP-dependent RNA helicase DDX19A OS=Homo sapiens ... [more]
DBP5_CANGA1.617e-1335.19ATP-dependent RNA helicase DBP5 OS=Candida glabrat... [more]
DBP5_YEAST2.112e-1336.45ATP-dependent RNA helicase DBP5 OS=Saccharomyces c... [more]
DBP5_YEAS72.112e-1336.45ATP-dependent RNA helicase DBP5 OS=Saccharomyces c... [more]
DDX25_BOVIN2.759e-1335.29ATP-dependent RNA helicase DDX25 OS=Bos taurus GN=... [more]
DBPA_BACSU2.759e-1339.45ATP-dependent RNA helicase dbpA OS=Bacillus subtil... [more]
DD19A_BOVIN3.603e-1337.14ATP-dependent RNA helicase DDX19A OS=Bos taurus GN... [more]
DBP5_YARLI6.146e-1333.94ATP-dependent RNA helicase DBP5 OS=Yarrowia lipoly... [more]
DDX59_HUMAN8.027e-1332.98Probable ATP-dependent RNA helicase DDX59 OS=Homo ... [more]
DBP5_SCLS11.048e-1240.19ATP-dependent RNA helicase dbp5 OS=Sclerotinia scl... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-347 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503860 ID=CF503860; Name=CF503860; organism=Citrus sinensis; type=EST; length=333bp
GTAGAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATT
AAATTATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAA
GGATCAAATTTATGATGTGTACCGTTATCTTCCACCGGATCTTCAGGTTG
TTTTGATATCTGCCACCCTTCCTCACGAAATATTGGAGATGACGACCAAA
TTCATGACAGATCCTGTAAAGATTCTTGTGAAGCGTGATGAGTTGACTTT
GGAGGGAATCAAGCAATTTTTTGTTGCAGTGGAAAGAGAGGAGTGGAAGT
TTGATACACTCTGTGATCTTTATGATACCCTTA
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