CF503860

Overview
NameCF503860
Unique NameCF503860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length333
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_BOTFB (ATP-dependent RNA helicase dbp5 OS=Botryotinia fuckeliana (strain B05.10) GN=dbp5 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.984e-12
Identity = 42/107 (39.25%), Postives = 61/107 (57.01%), Query Frame = 3
Query:    6 VCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 323
            V D+IKR+++    +K+L LDE+D ML + G  DQ   V   +  + Q++L SAT P E+      F     +I +KRDELT+ GIKQ F+    E  K++ L  LY
Sbjct:  198 VMDLIKRRSIDASQMKILCLDEADNMLDQQGLGDQCMRVKSMIRVE-QILLFSATFPDEVYGFAQDFSPRANEIKLKRDELTVSGIKQMFMDCPNEVGKYEILVKLY 303          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: Y802_STAS1 (Probable DEAD-box ATP-dependent RNA helicase SSP0802 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP0802 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.203e-12
Identity = 39/109 (35.78%), Postives = 63/109 (57.80%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPD-LQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 326
            RV D + R+TL+T  I  L+LDE+DEM++ GF D +  +   +P +  Q +L SAT+P  I  +  +FM  PV +    +E++   I++++  V+  E KFDT     D
Sbjct:  129 RVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMKFIMDKIPAEQRQTMLFSATMPKAIQTLVQQFMKSPVIVKTMNNEMSDPQIEEYYTIVKELE-KFDTFTSFLD 236          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: UAP56_RAT (Spliceosome RNA helicase Bat1 OS=Rattus norvegicus GN=Bat1 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 5.203e-12
Identity = 41/112 (36.61%), Postives = 68/112 (60.71%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            R+  + + K+L  + IK  +LDE D+ML +   +  + +++R  P + QV++ SATL  EI  +  KFM DP++I V  + +LTL G++Q++V ++  E K   L DL D L
Sbjct:  175 RILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE-KNRKLFDLLDVL 285          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: UAP56_PONAB (Spliceosome RNA helicase BAT1 OS=Pongo abelii GN=BAT1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.203e-12
Identity = 41/112 (36.61%), Postives = 68/112 (60.71%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            R+  + + K+L  + IK  +LDE D+ML +   +  + +++R  P + QV++ SATL  EI  +  KFM DP++I V  + +LTL G++Q++V ++  E K   L DL D L
Sbjct:  175 RILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE-KNRKLFDLLDVL 285          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: UAP56_PIG (Spliceosome RNA helicase BAT1 OS=Sus scrofa GN=BAT1 PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.203e-12
Identity = 41/112 (36.61%), Postives = 68/112 (60.71%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            R+  + + K+L  + IK  +LDE D+ML +   +  + +++R  P + QV++ SATL  EI  +  KFM DP++I V  + +LTL G++Q++V ++  E K   L DL D L
Sbjct:  175 RILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE-KNRKLFDLLDVL 285          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: UAP56_PANTR (Spliceosome RNA helicase BAT1 OS=Pan troglodytes GN=BAT1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.203e-12
Identity = 41/112 (36.61%), Postives = 68/112 (60.71%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            R+  + + K+L  + IK  +LDE D+ML +   +  + +++R  P + QV++ SATL  EI  +  KFM DP++I V  + +LTL G++Q++V ++  E K   L DL D L
Sbjct:  175 RILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE-KNRKLFDLLDVL 285          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: UAP56_MOUSE (Spliceosome RNA helicase Bat1 OS=Mus musculus GN=Bat1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.203e-12
Identity = 41/112 (36.61%), Postives = 68/112 (60.71%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            R+  + + K+L  + IK  +LDE D+ML +   +  + +++R  P + QV++ SATL  EI  +  KFM DP++I V  + +LTL G++Q++V ++  E K   L DL D L
Sbjct:  175 RILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE-KNRKLFDLLDVL 285          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: UAP56_MACMU (Spliceosome RNA helicase BAT1 OS=Macaca mulatta GN=BAT1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.203e-12
Identity = 41/112 (36.61%), Postives = 68/112 (60.71%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            R+  + + K+L  + IK  +LDE D+ML +   +  + +++R  P + QV++ SATL  EI  +  KFM DP++I V  + +LTL G++Q++V ++  E K   L DL D L
Sbjct:  175 RILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE-KNRKLFDLLDVL 285          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: UAP56_HUMAN (Spliceosome RNA helicase BAT1 OS=Homo sapiens GN=BAT1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.203e-12
Identity = 41/112 (36.61%), Postives = 68/112 (60.71%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            R+  + + K+L  + IK  +LDE D+ML +   +  + +++R  P + QV++ SATL  EI  +  KFM DP++I V  + +LTL G++Q++V ++  E K   L DL D L
Sbjct:  175 RILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE-KNRKLFDLLDVL 285          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: UAP56_CHICK (Spliceosome RNA helicase BAT1 OS=Gallus gallus GN=BAT1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.203e-12
Identity = 41/112 (36.61%), Postives = 68/112 (60.71%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            R+  + + K+L  + IK  +LDE D+ML +   +  + +++R  P + QV++ SATL  EI  +  KFM DP++I V  + +LTL G++Q++V ++  E K   L DL D L
Sbjct:  175 RILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE-KNRKLFDLLDVL 285          
The following BLAST results are available for this feature:
BLAST of CF503860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
DBP5_BOTFB3.984e-1239.25ATP-dependent RNA helicase dbp5 OS=Botryotinia fuc... [more]
Y802_STAS15.203e-1235.78Probable DEAD-box ATP-dependent RNA helicase SSP08... [more]
UAP56_RAT5.203e-1236.61Spliceosome RNA helicase Bat1 OS=Rattus norvegicus... [more]
UAP56_PONAB5.203e-1236.61Spliceosome RNA helicase BAT1 OS=Pongo abelii GN=B... [more]
UAP56_PIG5.203e-1236.61Spliceosome RNA helicase BAT1 OS=Sus scrofa GN=BAT... [more]
UAP56_PANTR5.203e-1236.61Spliceosome RNA helicase BAT1 OS=Pan troglodytes G... [more]
UAP56_MOUSE5.203e-1236.61Spliceosome RNA helicase Bat1 OS=Mus musculus GN=B... [more]
UAP56_MACMU5.203e-1236.61Spliceosome RNA helicase BAT1 OS=Macaca mulatta GN... [more]
UAP56_HUMAN5.203e-1236.61Spliceosome RNA helicase BAT1 OS=Homo sapiens GN=B... [more]
UAP56_CHICK5.203e-1236.61Spliceosome RNA helicase BAT1 OS=Gallus gallus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-347 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503860 ID=CF503860; Name=CF503860; organism=Citrus sinensis; type=EST; length=333bp
GTAGAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATT
AAATTATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAA
GGATCAAATTTATGATGTGTACCGTTATCTTCCACCGGATCTTCAGGTTG
TTTTGATATCTGCCACCCTTCCTCACGAAATATTGGAGATGACGACCAAA
TTCATGACAGATCCTGTAAAGATTCTTGTGAAGCGTGATGAGTTGACTTT
GGAGGGAATCAAGCAATTTTTTGTTGCAGTGGAAAGAGAGGAGTGGAAGT
TTGATACACTCTGTGATCTTTATGATACCCTTA
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