CF503860
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_BOTFB (ATP-dependent RNA helicase dbp5 OS=Botryotinia fuckeliana (strain B05.10) GN=dbp5 PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 3.984e-12 Identity = 42/107 (39.25%), Postives = 61/107 (57.01%), Query Frame = 3 Query: 6 VCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 323 V D+IKR+++ +K+L LDE+D ML + G DQ V + + Q++L SAT P E+ F +I +KRDELT+ GIKQ F+ E K++ L LY Sbjct: 198 VMDLIKRRSIDASQMKILCLDEADNMLDQQGLGDQCMRVKSMIRVE-QILLFSATFPDEVYGFAQDFSPRANEIKLKRDELTVSGIKQMFMDCPNEVGKYEILVKLY 303
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: Y802_STAS1 (Probable DEAD-box ATP-dependent RNA helicase SSP0802 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP0802 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 5.203e-12 Identity = 39/109 (35.78%), Postives = 63/109 (57.80%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPD-LQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 326 RV D + R+TL+T I L+LDE+DEM++ GF D + + +P + Q +L SAT+P I + +FM PV + +E++ I++++ V+ E KFDT D Sbjct: 129 RVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMKFIMDKIPAEQRQTMLFSATMPKAIQTLVQQFMKSPVIVKTMNNEMSDPQIEEYYTIVKELE-KFDTFTSFLD 236
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: UAP56_RAT (Spliceosome RNA helicase Bat1 OS=Rattus norvegicus GN=Bat1 PE=2 SV=3) HSP 1 Score: 69.707 bits (169), Expect = 5.203e-12 Identity = 41/112 (36.61%), Postives = 68/112 (60.71%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 R+ + + K+L + IK +LDE D+ML + + + +++R P + QV++ SATL EI + KFM DP++I V + +LTL G++Q++V ++ E K L DL D L Sbjct: 175 RILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE-KNRKLFDLLDVL 285
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: UAP56_PONAB (Spliceosome RNA helicase BAT1 OS=Pongo abelii GN=BAT1 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 5.203e-12 Identity = 41/112 (36.61%), Postives = 68/112 (60.71%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 R+ + + K+L + IK +LDE D+ML + + + +++R P + QV++ SATL EI + KFM DP++I V + +LTL G++Q++V ++ E K L DL D L Sbjct: 175 RILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE-KNRKLFDLLDVL 285
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: UAP56_PIG (Spliceosome RNA helicase BAT1 OS=Sus scrofa GN=BAT1 PE=3 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 5.203e-12 Identity = 41/112 (36.61%), Postives = 68/112 (60.71%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 R+ + + K+L + IK +LDE D+ML + + + +++R P + QV++ SATL EI + KFM DP++I V + +LTL G++Q++V ++ E K L DL D L Sbjct: 175 RILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE-KNRKLFDLLDVL 285
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: UAP56_PANTR (Spliceosome RNA helicase BAT1 OS=Pan troglodytes GN=BAT1 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 5.203e-12 Identity = 41/112 (36.61%), Postives = 68/112 (60.71%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 R+ + + K+L + IK +LDE D+ML + + + +++R P + QV++ SATL EI + KFM DP++I V + +LTL G++Q++V ++ E K L DL D L Sbjct: 175 RILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE-KNRKLFDLLDVL 285
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: UAP56_MOUSE (Spliceosome RNA helicase Bat1 OS=Mus musculus GN=Bat1 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 5.203e-12 Identity = 41/112 (36.61%), Postives = 68/112 (60.71%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 R+ + + K+L + IK +LDE D+ML + + + +++R P + QV++ SATL EI + KFM DP++I V + +LTL G++Q++V ++ E K L DL D L Sbjct: 175 RILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE-KNRKLFDLLDVL 285
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: UAP56_MACMU (Spliceosome RNA helicase BAT1 OS=Macaca mulatta GN=BAT1 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 5.203e-12 Identity = 41/112 (36.61%), Postives = 68/112 (60.71%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 R+ + + K+L + IK +LDE D+ML + + + +++R P + QV++ SATL EI + KFM DP++I V + +LTL G++Q++V ++ E K L DL D L Sbjct: 175 RILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE-KNRKLFDLLDVL 285
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: UAP56_HUMAN (Spliceosome RNA helicase BAT1 OS=Homo sapiens GN=BAT1 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 5.203e-12 Identity = 41/112 (36.61%), Postives = 68/112 (60.71%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 R+ + + K+L + IK +LDE D+ML + + + +++R P + QV++ SATL EI + KFM DP++I V + +LTL G++Q++V ++ E K L DL D L Sbjct: 175 RILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE-KNRKLFDLLDVL 285
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: UAP56_CHICK (Spliceosome RNA helicase BAT1 OS=Gallus gallus GN=BAT1 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 5.203e-12 Identity = 41/112 (36.61%), Postives = 68/112 (60.71%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 R+ + + K+L + IK +LDE D+ML + + + +++R P + QV++ SATL EI + KFM DP++I V + +LTL G++Q++V ++ E K L DL D L Sbjct: 175 RILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE-KNRKLFDLLDVL 285 The following BLAST results are available for this feature:
BLAST of CF503860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 238
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Sequences
The
following sequences are available for this feature:
EST sequence >CF503860 ID=CF503860; Name=CF503860; organism=Citrus sinensis; type=EST; length=333bpback to top |