CF503860

Overview
NameCF503860
Unique NameCF503860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length333
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4206 contig Csv1_Contig4206:531..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: FAL1_GIBZE (ATP-dependent RNA helicase FAL1 OS=Gibberella zeae GN=FAL1 PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 8.497e-47
Identity = 84/110 (76.36%), Postives = 105/110 (95.45%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DMI+R+ LRTR IK+LVLDE+DE+L++GF++QIYDVYRYLPP  QVV++SATLP+++L+MTTKFMTDPV+ILVKRDELTLEG+KQ+F+AVE+E+WKFDTLCDLYDTL
Sbjct:  155 RVADMIRRRHLRTRHIKMLVLDEADELLNKGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTL 264
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: FAL1_COCIM (ATP-dependent RNA helicase FAL1 OS=Coccidioides immitis GN=FAL1 PE=3 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 8.497e-47
Identity = 85/110 (77.27%), Postives = 104/110 (94.55%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DMI+R+ LRTR IK+LVLDE+D++L+RGF++QIYDVYRYLPP  QVV++SATLP+++L MTTKFMTDPV+ILVKRDELTLEG+KQ+F+AVE+EEWKFDTLCDLYDTL
Sbjct:  153 RVADMIRRRHLRTRHIKMLVLDEADDLLARGFREQIYDVYRYLPPATQVVVLSATLPYDVLSMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTL 262
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: FAL1_NEUCR (ATP-dependent RNA helicase fal-1 OS=Neurospora crassa GN=fal-1 PE=3 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 1.110e-46
Identity = 84/110 (76.36%), Postives = 105/110 (95.45%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DMI+R+ LRTR IK+LVLDE+DE+L++GF++QIYDVYRYLPP  QVV++SATLP+++L+MTTKFMTDPV+ILVKRDELTLEG+KQ+F+AVE+E+WKFDTLCDLYDTL
Sbjct:  154 RVADMIRRRHLRTRHIKMLVLDEADELLNQGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTL 263
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: FAL1_CHAGB (ATP-dependent RNA helicase FAL1 OS=Chaetomium globosum GN=FAL1 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.110e-46
Identity = 84/110 (76.36%), Postives = 105/110 (95.45%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DMI+R+ LRTR IK+LVLDE+DE+L++GF++QIYDVYRYLPP  QVV++SATLP+++L+MTTKFMTDPV+ILVKRDELTLEG+KQ+F+AVE+E+WKFDTLCDLYDTL
Sbjct:  155 RVADMIRRRHLRTRHIKMLVLDEADELLNQGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAVEKEDWKFDTLCDLYDTL 264
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: FAL1_MAGGR (ATP-dependent RNA helicase FAL1 OS=Magnaporthe grisea GN=FAL1 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.449e-46
Identity = 83/110 (75.45%), Postives = 105/110 (95.45%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DMI+R+ LRTR IK+LVLDE+DE+L++GF++QIYDVYRYLPP  QVV++SATLP+++L+MTTKFMTDPV+ILVKRDELTLEG+KQ+F+A+E+E+WKFDTLCDLYDTL
Sbjct:  155 RVADMIRRRHLRTRHIKMLVLDEADELLNQGFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTTKFMTDPVRILVKRDELTLEGLKQYFIAIEKEDWKFDTLCDLYDTL 264
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: FAL1_SCHPO (ATP-dependent RNA helicase fal1 OS=Schizosaccharomyces pombe GN=tif412 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.603e-45
Identity = 81/110 (73.64%), Postives = 102/110 (92.73%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DMI+R+ LRTR +K+L+LDE+DE+L++GFK+QIYD+YRYLPP  QVV++SATLP ++LEMT KF T+PV+ILVKRDELTLEG+KQ+F+AVE+EEWKFDTLCDLYDTL
Sbjct:  149 RVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEMTNKFTTNPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTL 258
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: FAL1_YARLI (ATP-dependent RNA helicase FAL1 OS=Yarrowia lipolytica GN=FAL1 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.772e-44
Identity = 80/110 (72.73%), Postives = 101/110 (91.82%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            R  DMIK+  LRT+ +K+L+LDE+DE+L++GF++QIYD+YRYLP   QVV++SATLPH +LEMT+KFMTDPV+ILVKRDELTLEG+KQ+F+AVE+EEWKFDTLCDLYDTL
Sbjct:  152 RCLDMIKKGCLRTKNLKMLILDEADELLNKGFQEQIYDIYRYLPAATQVVVVSATLPHSVLEMTSKFMTDPVRILVKRDELTLEGLKQYFIAVEQEEWKFDTLCDLYDTL 261
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: RH34_ARATH (DEAD-box ATP-dependent RNA helicase 34 OS=Arabidopsis thaliana GN=RH34 PE=2 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 6.733e-44
Identity = 87/110 (79.09%), Postives = 98/110 (89.09%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DMIKR +L+T+A+KLLVLDESDEMLS+G KDQIYDVYR LP D+QV LISATLP EILEMT KFMTDPV+ILVK DELTLEGIKQ++V V++EEWKFDTLCDLY  L
Sbjct:  150 RVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCLISATLPQEILEMTEKFMTDPVRILVKPDELTLEGIKQYYVDVDKEEWKFDTLCDLYGRL 259
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_SCHPO (ATP-dependent RNA helicase eIF4A OS=Schizosaccharomyces pombe GN=tif1 PE=1 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 2.829e-42
Identity = 78/110 (70.91%), Postives = 99/110 (90.00%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DMI+R+ L T A+++ VLDE+DEMLSRGFKDQIYD+++ LPP  QVVL+SAT+P ++LE+TTKFM DP++ILVK+DELTLEGIKQF+VAVE+EEWK DTLCDLY+T+
Sbjct:  147 RVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDLYETV 256
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: FAL1_CANAL (ATP-dependent RNA helicase FAL1 OS=Candida albicans GN=FAL1 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 6.302e-42
Identity = 75/110 (68.18%), Postives = 99/110 (90.00%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV D+IKR+ L+TR IK+L+LDE+DE+ ++GFK+QIY++Y++LPP +QVV++SATLP E+LEMT+KF TDPVKILVKRDE++L GIKQ++V  ERE+WKFDTLCDLYD L
Sbjct:  154 RVIDVIKRRNLQTRNIKVLILDEADELFTKGFKEQIYEIYKHLPPSVQVVVVSATLPREVLEMTSKFTTDPVKILVKRDEISLSGIKQYYVQCEREDWKFDTLCDLYDNL 263
The following BLAST results are available for this feature:
BLAST of CF503860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
FAL1_GIBZE8.497e-4776.36ATP-dependent RNA helicase FAL1 OS=Gibberella zeae... [more]
FAL1_COCIM8.497e-4777.27ATP-dependent RNA helicase FAL1 OS=Coccidioides im... [more]
FAL1_NEUCR1.110e-4676.36ATP-dependent RNA helicase fal-1 OS=Neurospora cra... [more]
FAL1_CHAGB1.110e-4676.36ATP-dependent RNA helicase FAL1 OS=Chaetomium glob... [more]
FAL1_MAGGR1.449e-4675.45ATP-dependent RNA helicase FAL1 OS=Magnaporthe gri... [more]
FAL1_SCHPO1.603e-4573.64ATP-dependent RNA helicase fal1 OS=Schizosaccharom... [more]
FAL1_YARLI1.772e-4472.73ATP-dependent RNA helicase FAL1 OS=Yarrowia lipoly... [more]
RH34_ARATH6.733e-4479.09DEAD-box ATP-dependent RNA helicase 34 OS=Arabidop... [more]
IF4A_SCHPO2.829e-4270.91ATP-dependent RNA helicase eIF4A OS=Schizosaccharo... [more]
FAL1_CANAL6.302e-4268.18ATP-dependent RNA helicase FAL1 OS=Candida albican... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-347 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503860 ID=CF503860; Name=CF503860; organism=Citrus sinensis; type=EST; length=333bp
GTAGAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATT
AAATTATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAA
GGATCAAATTTATGATGTGTACCGTTATCTTCCACCGGATCTTCAGGTTG
TTTTGATATCTGCCACCCTTCCTCACGAAATATTGGAGATGACGACCAAA
TTCATGACAGATCCTGTAAAGATTCTTGTGAAGCGTGATGAGTTGACTTT
GGAGGGAATCAAGCAATTTTTTGTTGCAGTGGAAAGAGAGGAGTGGAAGT
TTGATACACTCTGTGATCTTTATGATACCCTTA
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