CF503860

Overview
NameCF503860
Unique NameCF503860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length333
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4206 contig Csv1_Contig4206:531..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF411_TOBAC (Eukaryotic initiation factor 4A-11 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.517e-39
Identity = 75/110 (68.18%), Postives = 94/110 (85.45%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DM++R++LR   IK+ VLDE+DEMLSRGFKDQIYD+++ LPP +QV + SAT+P E LE+T KFM  PV+ILVKRDELTLEGIKQF+V V++EEWK +TLCDLY+TL
Sbjct:  168 RVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETL 277
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A1_ORYSJ (Eukaryotic initiation factor 4A-1 OS=Oryza sativa subsp. japonica GN=Os06g0701100 PE=2 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 1.112e-38
Identity = 76/110 (69.09%), Postives = 93/110 (84.55%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DM++R++LR   IK+ VLDE+DEMLSRGFKDQIYD+++ LP  +QV + SAT+P E LE+T KFM  PV+ILVKRDELTLEGIKQF+V VE+EEWK DTLCDLY+TL
Sbjct:  169 RVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETL 278
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_COCIM (ATP-dependent RNA helicase eIF4A OS=Coccidioides immitis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.897e-38
Identity = 72/110 (65.45%), Postives = 96/110 (87.27%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DMI+R+ L+T  +K+ VLDE+DEMLSRGF +QIYD++++LP   QVVL+SAT+P ++L++TTKFM DPV+ILVK+ ELTLEGIKQF++AVE+EEWK DTL DLY+T+
Sbjct:  153 RVHDMIQRRVLKTDQMKMFVLDEADEMLSRGFTEQIYDIFQFLPQSTQVVLLSATMPQDVLDVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKEEWKLDTLSDLYETV 262
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_EMENI (ATP-dependent RNA helicase eIF4A OS=Emericella nidulans GN=tif1 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.478e-38
Identity = 71/110 (64.55%), Postives = 95/110 (86.36%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            R+ DMI+R+ L+T  +K+ +LDE+DEMLSRGF +QIYD+++ LP   QVVL+SAT+P ++LE+TTKFM DPV+ILVK+ ELTLEGIKQF++AVE+EEWK DTL DLY+T+
Sbjct:  176 RIHDMIQRRVLKTDQMKMFILDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDTLSDLYETV 285
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_ASPTN (ATP-dependent RNA helicase eIF4A OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=tif1 PE=3 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 2.478e-38
Identity = 72/110 (65.45%), Postives = 95/110 (86.36%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            R+ DMI+R+ L+T  +KL +LDE+DEMLSRGF +QIYD+++ LP   QVVL+SAT+P ++LE+TTKFM DPV+ILVK+ ELTLEGIKQF++AVE+EEWK DTL DLY+T+
Sbjct:  151 RIQDMIQRRVLKTDQMKLFILDEADEMLSRGFTEQIYDIFQLLPQATQVVLLSATMPQDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDTLSDLYETV 260
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_WHEAT (Eukaryotic initiation factor 4A OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.236e-38
Identity = 75/110 (68.18%), Postives = 93/110 (84.55%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV D+++R++LR   IK+ VLDE+DEMLSRGFKDQIYD+++ LP  +QV + SAT+P E LE+T KFM  PV+ILVKRDELTLEGIKQF+V VE+EEWK DTLCDLY+TL
Sbjct:  169 RVFDIVRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETL 278
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A3_ARATH (Eukaryotic initiation factor 4A-3 OS=Arabidopsis thaliana GN=TIF4A-3 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.236e-38
Identity = 74/110 (67.27%), Postives = 94/110 (85.45%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV D+++R++LR  AIK+ VLDE+DEMLSRGFKDQIYD+++ LP  +QV + SAT+P E LE+T KFM  PV+ILVKRDELTLEGIKQF+V V++EEWK +TLCDLY+TL
Sbjct:  169 RVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETL 278
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF414_TOBAC (Eukaryotic initiation factor 4A-14 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.236e-38
Identity = 73/110 (66.36%), Postives = 95/110 (86.36%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DM++R++LR   IK+ VLDE+DEMLSRGFKDQIYD+++ LPP +QV + SAT+P E LE+T KFM+ PV+ILVKRD++TLEGIKQF+V V++EEWK +TLCDLY+TL
Sbjct:  168 RVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETL 277
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF413_TOBAC (Eukaryotic initiation factor 4A-13 (Fragment) OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.236e-38
Identity = 73/110 (66.36%), Postives = 94/110 (85.45%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DM++R++LR   IK+ VLDE+DEMLSRGFKDQIYD+++ LPP +QV + SAT+P E LE+T KFM  PV+ILVKRD++TLEGIKQF+V V++EEWK +TLCDLY+TL
Sbjct:  168 RVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNQPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETL 277
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_AJECN (ATP-dependent RNA helicase eIF4A OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.227e-38
Identity = 72/110 (65.45%), Postives = 95/110 (86.36%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DMI+R+ L+T  +K+ VLDE+DEMLS GF +QIYD++++LP   QVVL+SAT+P ++LE+TTKFM DPV+ILVK+ ELTLEGIKQF++AVE+EEWK DTL DLY+T+
Sbjct:  153 RVHDMIQRRVLKTDHMKMFVLDEADEMLSHGFTEQIYDIFQFLPQSTQVVLLSATMPQDVLEVTTKFMRDPVRILVKKAELTLEGIKQFYIAVEKEEWKLDTLSDLYETV 262
The following BLAST results are available for this feature:
BLAST of CF503860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
IF411_TOBAC8.517e-3968.18Eukaryotic initiation factor 4A-11 OS=Nicotiana ta... [more]
IF4A1_ORYSJ1.112e-3869.09Eukaryotic initiation factor 4A-1 OS=Oryza sativa ... [more]
IF4A_COCIM1.897e-3865.45ATP-dependent RNA helicase eIF4A OS=Coccidioides i... [more]
IF4A_EMENI2.478e-3864.55ATP-dependent RNA helicase eIF4A OS=Emericella nid... [more]
IF4A_ASPTN2.478e-3865.45ATP-dependent RNA helicase eIF4A OS=Aspergillus te... [more]
IF4A_WHEAT3.236e-3868.18Eukaryotic initiation factor 4A OS=Triticum aestiv... [more]
IF4A3_ARATH3.236e-3867.27Eukaryotic initiation factor 4A-3 OS=Arabidopsis t... [more]
IF414_TOBAC3.236e-3866.36Eukaryotic initiation factor 4A-14 OS=Nicotiana ta... [more]
IF413_TOBAC3.236e-3866.36Eukaryotic initiation factor 4A-13 (Fragment) OS=N... [more]
IF4A_AJECN4.227e-3865.45ATP-dependent RNA helicase eIF4A OS=Ajellomyces ca... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-347 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503860 ID=CF503860; Name=CF503860; organism=Citrus sinensis; type=EST; length=333bp
GTAGAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATT
AAATTATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAA
GGATCAAATTTATGATGTGTACCGTTATCTTCCACCGGATCTTCAGGTTG
TTTTGATATCTGCCACCCTTCCTCACGAAATATTGGAGATGACGACCAAA
TTCATGACAGATCCTGTAAAGATTCTTGTGAAGCGTGATGAGTTGACTTT
GGAGGGAATCAAGCAATTTTTTGTTGCAGTGGAAAGAGAGGAGTGGAAGT
TTGATACACTCTGTGATCTTTATGATACCCTTA
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