CF503861

Overview
NameCF503861
Unique NameCF503861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length329
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503861 vs. ExPASy Swiss-Prot
Match: GLR25_ARATH (Glutamate receptor 2.5 OS=Arabidopsis thaliana GN=GLR2.5 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.569e-16
Identity = 40/104 (38.46%), Postives = 63/104 (60.58%), Query Frame = 2
Query:    2 SFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVH 313
            SFSAT P L SL+ PYF+R T  D  Q+ AI+ I++ + WREV+ IYVD++ G   +  L D       RI +++ +S+  ++D+I   L K+    +R+ +VH
Sbjct:  130 SFSATSPLLDSLRSPYFIRATHDDSSQVQAISAIIESFRWREVVPIYVDNEFGEGILPNLVDAFQEINVRIRYRSAISLHYSDDQIKKELYKLMTMPTRVFIVH 233          
BLAST of CF503861 vs. ExPASy Swiss-Prot
Match: GLR21_ARATH (Glutamate receptor 2.1 OS=Arabidopsis thaliana GN=GLR2.1 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.676e-16
Identity = 42/104 (40.38%), Postives = 63/104 (60.58%), Query Frame = 2
Query:    2 SFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVH 313
            ++SAT P+L+S++  YF R T  D  Q+ AI EI+  +GWREV  +YVDD  G   +  L D L     RI ++  +S  AT+DEI+  L+++    +R+ VVH
Sbjct:  125 TYSATSPSLASIRSQYFFRATYDDSSQVHAIKEIIKLFGWREVAPVYVDDTFGEGIMPRLTDVLQEINVRIPYRTVISPNATDDEISVELLRMMTLPTRVFVVH 228          
BLAST of CF503861 vs. ExPASy Swiss-Prot
Match: GLR26_ARATH (Glutamate receptor 2.6 OS=Arabidopsis thaliana GN=GLR2.6 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.564e-16
Identity = 39/104 (37.50%), Postives = 62/104 (59.62%), Query Frame = 2
Query:    2 SFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVH 313
            SFSA+ P L SL+ PYF+R T  D  Q+ AI+ I++ + WREV+ IY D++ G   +  L D       RI +++ +SV +T+D +   L K+    +R+ +VH
Sbjct:  129 SFSASSPVLDSLRSPYFIRATHDDSSQVHAISAIIESFRWREVVPIYADNEFGEGILPYLVDAFQEINVRIRYRSAISVHSTDDLVKKELYKLMTMPTRVFIVH 232          
BLAST of CF503861 vs. ExPASy Swiss-Prot
Match: GLR27_ARATH (Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=GLR2.7 PE=2 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 5.961e-16
Identity = 43/104 (41.35%), Postives = 62/104 (59.62%), Query Frame = 2
Query:    2 SFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVH 313
            +FSAT P L+S+  PYFVR T  D  Q+ AIA IV  +GWR V+AIYVD++ G   +  L D L   +  +  +  +  EA +D+I   L K+   ++R+ VVH
Sbjct:  132 TFSATCPLLTSINSPYFVRATLDDSSQVKAIAAIVKSFGWRNVVAIYVDNEFGEGILPLLTDALQDVQAFVVNRCLIPQEANDDQILKELYKLMTMQTRVFVVH 235          
BLAST of CF503861 vs. ExPASy Swiss-Prot
Match: GLR22_ARATH (Glutamate receptor 2.2 OS=Arabidopsis thaliana GN=GLR2.2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.017e-15
Identity = 39/104 (37.50%), Postives = 65/104 (62.50%), Query Frame = 2
Query:    2 SFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVH 313
            S+SAT P+L+SL+ PYF R T  D  Q+ AI  I+  +GWREV+ +Y+D+  G   +  L D+L     RI +++ + + AT+ +I+  L+K+    +R+ +VH
Sbjct:  125 SYSATSPSLTSLRSPYFFRATYEDSSQVHAIKAIIKLFGWREVVPVYIDNTFGEGIMPRLTDSLQDINVRIPYRSVIPLNATDQDISVELLKMMNMPTRVFIVH 228          
BLAST of CF503861 vs. ExPASy Swiss-Prot
Match: GLR28_ARATH (Glutamate receptor 2.8 OS=Arabidopsis thaliana GN=GLR2.8 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.468e-14
Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = 2
Query:    2 SFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVH 313
            SFSAT P L+S++  YFVR T  D YQ+ AIA I + +GWR V+AIYVD++ G   +  L D L   +     ++ +  EA +D+I   L K+   ++R+ VVH
Sbjct:  126 SFSATSPLLTSIKSDYFVRGTIDDSYQVKAIAAIFESFGWRSVVAIYVDNELGEGIMPYLFDALQDVQVD---RSVIPSEANDDQILKELYKLMTRQTRVFVVH 226          
BLAST of CF503861 vs. ExPASy Swiss-Prot
Match: GLR29_ARATH (Glutamate receptor 2.9 OS=Arabidopsis thaliana GN=GLR2.9 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.579e-14
Identity = 44/104 (42.31%), Postives = 60/104 (57.69%), Query Frame = 2
Query:    2 SFSATDPTLSSLQFPYFVRTTQSDQYQMAAIAEIVDHYGWREVIAIYVDDDHGRNGIAALGDTLAAKRCRISFKAPLSVEATEDEITDLLVKVALTESRIIVVH 313
            +FSAT P L+S++ PYFVR T  D  Q+ AIA I   + WR V+AIYVD++ G   +  L D L     + S   P   EA +DEI   L K+   ++R+ VVH
Sbjct:  123 TFSATSPLLTSIKSPYFVRATIDDSSQVRAIASIFKFFRWRRVVAIYVDNEFGEGFMPFLFDALQDVEVKRSVIPP---EAIDDEIQKELRKLMERQARVFVVH 223          
The following BLAST results are available for this feature:
BLAST of CF503861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GLR25_ARATH1.569e-1638.46Glutamate receptor 2.5 OS=Arabidopsis thaliana GN=... [more]
GLR21_ARATH2.676e-1640.38Glutamate receptor 2.1 OS=Arabidopsis thaliana GN=... [more]
GLR26_ARATH4.564e-1637.50Glutamate receptor 2.6 OS=Arabidopsis thaliana GN=... [more]
GLR27_ARATH5.961e-1641.35Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=... [more]
GLR22_ARATH1.017e-1537.50Glutamate receptor 2.2 OS=Arabidopsis thaliana GN=... [more]
GLR28_ARATH1.468e-1441.35Glutamate receptor 2.8 OS=Arabidopsis thaliana GN=... [more]
GLR29_ARATH5.579e-1442.31Glutamate receptor 2.9 OS=Arabidopsis thaliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-348 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503861 ID=CF503861; Name=CF503861; organism=Citrus sinensis; type=EST; length=329bp
GTCATTCTCAGCCACAGACCCTACTTTGTCTTCACTTCAATTTCCATACT
TCGTCAGGACTACCCAGAGTGATCAATATCAGATGGCTGCAATAGCAGAA
ATTGTAGATCACTATGGATGGAGGGAGGTAATTGCAATATATGTAGATGA
TGATCACGGGAGAAATGGGATAGCTGCATTAGGAGATACACTTGCTGCAA
AGCGTTGTCGGATATCTTTCAAAGCACCTTTGAGCGTTGAAGCAACTGAG
GATGAAATCACTGACTTACTGGTTAAGGTTGCTTTAACTGAGTCTCGGAT
TATTGTTGTTCATACTCATTACAATCGGG
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