CF503875

Overview
NameCF503875
Unique NameCF503875
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length216
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503875 vs. ExPASy Swiss-Prot
Match: KCS8_ARATH (3-ketoacyl-CoA synthase 8 OS=Arabidopsis thaliana GN=KCS8 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.875e-22
Identity = 48/71 (67.61%), Postives = 60/71 (84.51%), Query Frame = 1
Query:    4 NLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSD 216
            NLGGMGCSAG+I++D+A  LLQVH N+YA+V+S ENIT N Y G ++S LV+NCLFR+GGAA+LLSNR  D
Sbjct:  207 NLGGMGCSAGVIAVDVAKGLLQVHRNTYAIVVSTENITQNLYLGKNKSMLVTNCLFRVGGAAVLLSNRSRD 277          
BLAST of CF503875 vs. ExPASy Swiss-Prot
Match: KCS18_ARATH (3-ketoacyl-CoA synthase 18 OS=Arabidopsis thaliana GN=FAE1 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.875e-22
Identity = 50/72 (69.44%), Postives = 60/72 (83.33%), Query Frame = 1
Query:    1 YNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSD 216
            +NLGGMGCSAG+I+IDLA +LL VH N+YALV+S ENIT   Y G +RS +VSNCLFR+GGAAILLSN+  D
Sbjct:  216 FNLGGMGCSAGVIAIDLAKDLLHVHKNTYALVVSTENITQGIYAGENRSMMVSNCLFRVGGAAILLSNKSGD 287          
BLAST of CF503875 vs. ExPASy Swiss-Prot
Match: KCS6_ARATH (3-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana GN=CUT1 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.455e-22
Identity = 49/72 (68.06%), Postives = 60/72 (83.33%), Query Frame = 1
Query:    1 YNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSD 216
            +NL GMGCSAGLIS+DLA +LLQVHPNS A+++S E IT N+Y GN+R+ L+ NCLFRMG AAI +SNR SD
Sbjct:  218 FNLSGMGCSAGLISVDLARDLLQVHPNSNAIIVSTEIITPNYYQGNERAMLLPNCLFRMGAAAIHMSNRRSD 289          
BLAST of CF503875 vs. ExPASy Swiss-Prot
Match: KCS10_ARATH (3-ketoacyl-CoA synthase 10 OS=Arabidopsis thaliana GN=FDH PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 2.073e-21
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 1
Query:    1 YNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSD 216
            YNLGGMGCSAG+I+IDLA ++LQ +PNSYA+V+S E +  NWY G+D+S ++ NC FRMG +A++LSNR  D
Sbjct:  250 YNLGGMGCSAGIIAIDLARDMLQSNPNSYAVVVSTEMVGYNWYVGSDKSMVIPNCFFRMGCSAVMLSNRRRD 321          
BLAST of CF503875 vs. ExPASy Swiss-Prot
Match: KCS15_ARATH (3-ketoacyl-CoA synthase 15 OS=Arabidopsis thaliana GN=KCS15 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.486e-19
Identity = 44/72 (61.11%), Postives = 54/72 (75.00%), Query Frame = 1
Query:    1 YNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSD 216
            YNLGGMGCSAG+I+IDLA +LL  H  SYALV+S E ++  WY GND + L  NC FRMG AA++LS+R  D
Sbjct:  217 YNLGGMGCSAGVIAIDLAKDLLNAHQGSYALVVSTEIVSFTWYSGNDVALLPPNCFFRMGAAAVMLSSRRID 288          
BLAST of CF503875 vs. ExPASy Swiss-Prot
Match: KCS20_ARATH (Probable 3-ketoacyl-CoA synthase 20 OS=Arabidopsis thaliana GN=KCS20 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.323e-19
Identity = 40/72 (55.56%), Postives = 56/72 (77.78%), Query Frame = 1
Query:    1 YNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSD 216
            +NL GMGC+AG++S++LAN+LLQ H  S AL++S E +  +WY G DRS L++NCLFRMG AA+L+S+   D
Sbjct:  180 FNLSGMGCAAGILSVNLANDLLQAHRGSLALIVSTEALNTHWYIGKDRSMLLTNCLFRMGAAAVLMSSNDHD 251          
BLAST of CF503875 vs. ExPASy Swiss-Prot
Match: KCS14_ARATH (Probable 3-ketoacyl-CoA synthase 14 OS=Arabidopsis thaliana GN=KCS14 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.065e-17
Identity = 43/72 (59.72%), Postives = 55/72 (76.39%), Query Frame = 1
Query:    1 YNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSD 216
            YNL G       IS+DLA NLL+ +PN+YA+++S EN+TL+ Y GNDRS LV NCLFR+GGAA++LSNR  D
Sbjct:  189 YNLSG-------ISVDLATNLLKANPNTYAVIVSTENMTLSMYRGNDRSMLVPNCLFRVGGAAVMLSNRSQD 253          
BLAST of CF503875 vs. ExPASy Swiss-Prot
Match: KCS12_ARATH (3-ketoacyl-CoA synthase 12 OS=Arabidopsis thaliana GN=KCS12 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.284e-17
Identity = 38/71 (53.52%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    1 YNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFS 213
            +NL GMGCSA LIS+D+  N+ + + N  ALV + E+++ NWY GN+RS +++NCLFR GG AILL+N+ S
Sbjct:  161 FNLTGMGCSASLISVDIVKNIFKSYANKLALVATSESLSPNWYSGNNRSMILANCLFRSGGCAILLTNKRS 231          
BLAST of CF503875 vs. ExPASy Swiss-Prot
Match: KCS7_ARATH (3-ketoacyl-CoA synthase 7 OS=Arabidopsis thaliana GN=KCS7 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.177e-16
Identity = 39/72 (54.17%), Postives = 57/72 (79.17%), Query Frame = 1
Query:    1 YNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSD 216
            ++L GMGCSAG++S++L  +L+++H +S ALV+SME ++ N Y G  +S L++N +FRMGGAAILLSNR  D
Sbjct:  176 FSLSGMGCSAGILSVNLVKDLMKIHGDSLALVLSMEAVSPNGYRGKCKSMLIANTIFRMGGAAILLSNRKQD 247          
BLAST of CF503875 vs. ExPASy Swiss-Prot
Match: KCS3_ARATH (3-ketoacyl-CoA synthase 3 OS=Arabidopsis thaliana GN=KCS3 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.177e-16
Identity = 36/71 (50.70%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    1 YNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFS 213
            +NL  MGCSA +ISID+  N+ + + N  ALV++ E+++ NWY GN+RS +++NCLFR GG A+LL+N+ S
Sbjct:  204 FNLTAMGCSASVISIDIVKNIFKTYKNKLALVVTSESLSPNWYSGNNRSMILANCLFRSGGCAVLLTNKRS 274          
The following BLAST results are available for this feature:
BLAST of CF503875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
KCS8_ARATH1.875e-2267.613-ketoacyl-CoA synthase 8 OS=Arabidopsis thaliana ... [more]
KCS18_ARATH1.875e-2269.443-ketoacyl-CoA synthase 18 OS=Arabidopsis thaliana... [more]
KCS6_ARATH5.455e-2268.063-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana ... [more]
KCS10_ARATH2.073e-2161.113-ketoacyl-CoA synthase 10 OS=Arabidopsis thaliana... [more]
KCS15_ARATH1.486e-1961.113-ketoacyl-CoA synthase 15 OS=Arabidopsis thaliana... [more]
KCS20_ARATH4.323e-1955.56Probable 3-ketoacyl-CoA synthase 20 OS=Arabidopsis... [more]
KCS14_ARATH1.065e-1759.72Probable 3-ketoacyl-CoA synthase 14 OS=Arabidopsis... [more]
KCS12_ARATH5.284e-1753.523-ketoacyl-CoA synthase 12 OS=Arabidopsis thaliana... [more]
KCS7_ARATH1.177e-1654.173-ketoacyl-CoA synthase 7 OS=Arabidopsis thaliana ... [more]
KCS3_ARATH1.177e-1650.703-ketoacyl-CoA synthase 3 OS=Arabidopsis thaliana ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-362 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503875 ID=CF503875; Name=CF503875; organism=Citrus sinensis; type=EST; length=216bp
TACAATTTGGGAGGGATGGGCTGCAGTGCAGGTTTGATTTCAATTGATCT
TGCAAACAATCTTCTTCAGGTTCATCCCAACTCTTATGCATTGGTTATTA
GCATGGAGAACATCACATTGAATTGGTACTTTGGAAATGATCGGTCAAAG
CTTGTTTCAAATTGCTTATTCCGGATGGGAGGGGCTGCAATATTGCTTTC
AAACAGATTCTCTGAC
back to top