CF503878

Overview
NameCF503878
Unique NameCF503878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length370
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHSB_IPOTR (Chalcone synthase B (Fragment) OS=Ipomoea triloba GN=CHSB PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.403e-27
Identity = 58/122 (47.54%), Postives = 81/122 (66.39%), Query Frame = 3
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EIT   FRGP+    D+L+ Q LF            P   +E PL++LVS++QTI+P++D  +   LRE+GLTFH  + VP ++++N+E  L +AF P GISDWNSIFW+ HPGG AI+D+V
Sbjct:  200 EITINIFRGPSLEQDDNLLAQCLFGDGSAAMIVGTDPRPDLETPLFELVSSAQTIVPNTDSHLKLTLREMGLTFHCSRAVPSVLAENVEDCLVKAFEPYGISDWNSIFWVFHPGGNAIVDRV 321          
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHSA_IPOTR (Chalcone synthase A (Fragment) OS=Ipomoea triloba GN=CHSA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.668e-27
Identity = 58/122 (47.54%), Postives = 81/122 (66.39%), Query Frame = 3
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EIT   FRGP+    D+L+ Q LF            P   +E PL++LVS++QTI+P++D  +   LRE+GLTFH  + VP ++++N+E  L +AF P GISDWNSIFW+ HPGG AI+D+V
Sbjct:  196 EITINIFRGPSLEQDDNLLAQCLFGDGSAAMIVGKDPRPGLETPLFELVSSAQTIVPNTDSHLKLTLREMGLTFHCSRAVPSVLAENVEDCLVKAFEPYGISDWNSIFWVFHPGGYAIVDRV 317          
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: TBSYN_HYPAN (Trihydroxybenzophenone synthase OS=Hypericum androsaemum PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.185e-26
Identity = 58/123 (47.15%), Postives = 79/123 (64.23%), Query Frame = 3
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDT-SVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            E TA+TF  P ++HLD +VGQA+F            PD  S ER ++ ++S SQTI+P SDGAI  H  E+G+++ L +DV  L   NI   + EAF+PLG+SDWNS+F+  HPGG  I+D V
Sbjct:  195 ENTAMTFHAPNESHLDVIVGQAMFSDGAAALIIGACPDVASGERAVFNILSASQTIVPGSDGAITAHFYEMGMSYFLKEDVIPLFRDNIAAVMEEAFSPLGVSDWNSLFYSIHPGGRGIIDGV 317          
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: VPS_PSINU (Phloroisovalerophenone synthase OS=Psilotum nudum GN=VPS PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.597e-21
Identity = 50/126 (39.68%), Postives = 73/126 (57.94%), Query Frame = 3
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNI----EKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            E+T ++FRGP + H ++LVGQALF            P    E   +++     +++PDSD A+ G+++E GL  HL K +P LI +NI    + +L E F     S +N +FW+ HPGGPAILD V
Sbjct:  199 ELTLISFRGPTEDHPENLVGQALFGDGAAALIVGADPIPHAENASFEIHWARSSVVPDSDDAVTGNIKENGLVLHLSKTIPDLIGQNIHTLLKDALEEMFDACNPSSFNDLFWVIHPGGPAILDAV 324          
The following BLAST results are available for this feature:
BLAST of CF503878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
CHSB_IPOTR7.403e-2747.54Chalcone synthase B (Fragment) OS=Ipomoea triloba ... [more]
CHSA_IPOTR9.668e-2747.54Chalcone synthase A (Fragment) OS=Ipomoea triloba ... [more]
TBSYN_HYPAN8.185e-2647.15Trihydroxybenzophenone synthase OS=Hypericum andro... [more]
VPS_PSINU1.597e-2139.68Phloroisovalerophenone synthase OS=Psilotum nudum ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-365 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503878 ID=CF503878; Name=CF503878; organism=Citrus sinensis; type=EST; length=370bp
CGGAGATCACGGCAGTCACTTTCCGCGGCCCTGCCGATACTCATCTTGAT
TCTCTTGTGGGCCAGGCTTTGTTCGGTGATGGTGCTGCTGCTGTGATCGT
GGGTGCCGATCCTGACACGTCGGTCGAGCGTCCGTTGTATCAGCTCGTGT
CGACTTCGCAGACGATCCTCCCTGACTCTGACGGTGCAATTGACGGACAC
TTGCGCGAAGTCGGTCTCACTTTCCATTTGCTTAAAGACGTCCCCGGCTT
GATCTCAAAGAATATAGAGAAAAGCCTGTCTGAAGCGTTCGCCCCGCTTG
GCATCAGCGACTGGAACTCGATATTCTGGATCGCTCACCCCGGTGGGCCC
GCAATTCTGGACCAAGTGGA
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