CF503878

Overview
NameCF503878
Unique NameCF503878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length370
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHSY_HYPAN (Chalcone synthase OS=Hypericum androsaemum PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.638e-50
Identity = 96/122 (78.69%), Postives = 104/122 (85.25%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EITAVTFRGP DTHLDSLVGQALF            P   VE+PL++LVS +QTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKN+EKSL+EAF PLGISDWNS+FWIAHPGGPAILDQV
Sbjct:  192 EITAVTFRGPTDTHLDSLVGQALFGDGAAAIIIGSDPIPEVEKPLFELVSAAQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNVEKSLTEAFKPLGISDWNSLFWIAHPGGPAILDQV 313
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHSY_CALCH (Chalcone synthase OS=Callistephus chinensis GN=CHS PE=2 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 1.638e-50
Identity = 94/122 (77.05%), Postives = 106/122 (86.89%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EITAVTFRGP DTHLDSLVGQALF            PD + ERPL++++S +QTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIEK+L++AF+PLGI+DWNSIFWIAHPGGPAILDQV
Sbjct:  195 EITAVTFRGPNDTHLDSLVGQALFGDGAAAVIVGADPDLTTERPLFEMISAAQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKALTQAFSPLGITDWNSIFWIAHPGGPAILDQV 316
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHS1_CITSI (Chalcone synthase 1 OS=Citrus sinensis GN=CHS1 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.638e-50
Identity = 95/122 (77.87%), Postives = 105/122 (86.07%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EITAVTFRGP+DTHLDSLVGQALF            P   +E+P+++LVST+QTILPDSDG+IDGHLRE GLTFHLLKDVPGLISKNI+KSL+EAF PLGISDWNSIFWIAHPGGPAILDQV
Sbjct:  191 EITAVTFRGPSDTHLDSLVGQALFGDGAAAIIIGADPIPEIEKPMFELVSTAQTILPDSDGSIDGHLREAGLTFHLLKDVPGLISKNIQKSLTEAFKPLGISDWNSIFWIAHPGGPAILDQV 312
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHS2_SOLLC (Chalcone synthase 2 OS=Solanum lycopersicum GN=CHS2 PE=2 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 2.139e-50
Identity = 97/122 (79.51%), Postives = 104/122 (85.25%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EITAVTFRGP+DTHLDS+VGQALF            P   VERPL++LVS +QT+LPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF PLGISDWNSIFWIAHPGGPAILDQV
Sbjct:  192 EITAVTFRGPSDTHLDSMVGQALFGDRAAAMIIGSDPLPEVERPLFELVSAAQTLLPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLIEAFQPLGISDWNSIFWIAHPGGPAILDQV 313
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHSJ_PETHY (Chalcone synthase J OS=Petunia hybrida GN=CHSJ PE=2 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 2.793e-50
Identity = 98/122 (80.33%), Postives = 103/122 (84.43%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EITAVTFRGP DTHLDSLVGQALF            P   VERPL++LVS SQT+LPDS+GAIDGHLREVGLTFHLLKDVPGLISKNI+KSL EAF PLGISDWNSIFWIAHPGGPAILDQV
Sbjct:  192 EITAVTFRGPNDTHLDSLVGQALFGDGAAAIIIGSDPLPGVERPLFELVSASQTLLPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIQKSLVEAFQPLGISDWNSIFWIAHPGGPAILDQV 313
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHS1_GERHY (Chalcone synthase 1 OS=Gerbera hybrida GN=CHS1 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 2.793e-50
Identity = 95/122 (77.87%), Postives = 105/122 (86.07%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EITAVTFRGP DTHLDSLVGQALF            PD + ERPL+++VS +QTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIEK+L+ AF+PLGI+DWNSIFWIAHPGGPAILDQV
Sbjct:  195 EITAVTFRGPNDTHLDSLVGQALFGDGAAAVIVGSDPDLTTERPLFEMVSAAQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKALTTAFSPLGINDWNSIFWIAHPGGPAILDQV 316
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHSY_MALDO (Chalcone synthase (Fragment) OS=Malus domestica GN=CHS PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 3.648e-50
Identity = 95/122 (77.87%), Postives = 104/122 (85.25%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EITAVTFRGP+DTHLDSLVGQALF            P   VE+PL++LVS +QT+LPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL+EA  P+GISDWNS+FWIAHPGGPAILDQV
Sbjct:   35 EITAVTFRGPSDTHLDSLVGQALFGDGAAAVIIGADPVPEVEKPLFELVSAAQTVLPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLNEALKPIGISDWNSLFWIAHPGGPAILDQV 156
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHSY_HYDMC (Chalcone synthase OS=Hydrangea macrophylla GN=CHS PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 4.765e-50
Identity = 97/122 (79.51%), Postives = 103/122 (84.43%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EITAVTFRGP+DTHLDSLVGQALF            P   VE+PL+++VS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EAF PL ISDWNSIFWIAHPGGPAILDQV
Sbjct:  192 EITAVTFRGPSDTHLDSLVGQALFGDGAAAVIIGSDPMPEVEKPLFEIVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLVEAFRPLDISDWNSIFWIAHPGGPAILDQV 313
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHSE_IPOPU (Chalcone synthase E OS=Ipomoea purpurea GN=CHSE PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 4.765e-50
Identity = 96/122 (78.69%), Postives = 103/122 (84.43%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EITAVTFRGP+D HLDSLVGQALF            PD  +ERPL+QLVS +QTILPDS GAIDGHLREVGLTFHLLKDVPGLISK+IEKSL+EAF PLGI DWNS+FWIAHPGGPAILDQV
Sbjct:  192 EITAVTFRGPSDAHLDSLVGQALFGDGAAALIIGSDPDPDLERPLFQLVSAAQTILPDSGGAIDGHLREVGLTFHLLKDVPGLISKHIEKSLNEAFQPLGIRDWNSLFWIAHPGGPAILDQV 313
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHSE_IPONI (Chalcone synthase E OS=Ipomoea nil GN=CHSE PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 4.765e-50
Identity = 96/122 (78.69%), Postives = 103/122 (84.43%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EITAVTFRGP+D HLDSLVGQALF            PD  +ERPL+QLVS +QTILPDS GAIDGHLREVGLTFHLLKDVPGLISK+IEKSL+EAF PLGI DWNS+FWIAHPGGPAILDQV
Sbjct:  192 EITAVTFRGPSDAHLDSLVGQALFGDGAAALIIGSDPDPDLERPLFQLVSAAQTILPDSGGAIDGHLREVGLTFHLLKDVPGLISKHIEKSLNEAFQPLGIHDWNSLFWIAHPGGPAILDQV 313
The following BLAST results are available for this feature:
BLAST of CF503878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
CHSY_HYPAN1.638e-5078.69Chalcone synthase OS=Hypericum androsaemum PE=1 SV... [more]
CHSY_CALCH1.638e-5077.05Chalcone synthase OS=Callistephus chinensis GN=CHS... [more]
CHS1_CITSI1.638e-5077.87Chalcone synthase 1 OS=Citrus sinensis GN=CHS1 PE=... [more]
CHS2_SOLLC2.139e-5079.51Chalcone synthase 2 OS=Solanum lycopersicum GN=CHS... [more]
CHSJ_PETHY2.793e-5080.33Chalcone synthase J OS=Petunia hybrida GN=CHSJ PE=... [more]
CHS1_GERHY2.793e-5077.87Chalcone synthase 1 OS=Gerbera hybrida GN=CHS1 PE=... [more]
CHSY_MALDO3.648e-5077.87Chalcone synthase (Fragment) OS=Malus domestica GN... [more]
CHSY_HYDMC4.765e-5079.51Chalcone synthase OS=Hydrangea macrophylla GN=CHS ... [more]
CHSE_IPOPU4.765e-5078.69Chalcone synthase E OS=Ipomoea purpurea GN=CHSE PE... [more]
CHSE_IPONI4.765e-5078.69Chalcone synthase E OS=Ipomoea nil GN=CHSE PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-365 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503878 ID=CF503878; Name=CF503878; organism=Citrus sinensis; type=EST; length=370bp
CGGAGATCACGGCAGTCACTTTCCGCGGCCCTGCCGATACTCATCTTGAT
TCTCTTGTGGGCCAGGCTTTGTTCGGTGATGGTGCTGCTGCTGTGATCGT
GGGTGCCGATCCTGACACGTCGGTCGAGCGTCCGTTGTATCAGCTCGTGT
CGACTTCGCAGACGATCCTCCCTGACTCTGACGGTGCAATTGACGGACAC
TTGCGCGAAGTCGGTCTCACTTTCCATTTGCTTAAAGACGTCCCCGGCTT
GATCTCAAAGAATATAGAGAAAAGCCTGTCTGAAGCGTTCGCCCCGCTTG
GCATCAGCGACTGGAACTCGATATTCTGGATCGCTCACCCCGGTGGGCCC
GCAATTCTGGACCAAGTGGA
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