CF503878

Overview
NameCF503878
Unique NameCF503878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length370
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHSY_PHAVU (Chalcone synthase 17 OS=Phaseolus vulgaris GN=CHS17 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 8.411e-47
Identity = 91/122 (74.59%), Postives = 101/122 (82.79%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EITAVTFRGP+DTHLDSLVGQALF            P   +E+PL++LV T+QTI PDSDGAIDGHLREVGLTFHLLKDVPG++SKNI K+L EAF PL ISD+NSIFWIAHPGGPAILDQV
Sbjct:  192 EITAVTFRGPSDTHLDSLVGQALFGDGAAAVIVGSDPIPQIEKPLFELVWTAQTIAPDSDGAIDGHLREVGLTFHLLKDVPGIVSKNIGKALFEAFNPLNISDYNSIFWIAHPGGPAILDQV 313
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHSA_PEA (Chalcone synthase 1A OS=Pisum sativum GN=CHS-1A PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.435e-46
Identity = 91/122 (74.59%), Postives = 101/122 (82.79%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EITAVTFRGP+DTHLDSLVGQALF            P   VE+PL++LV T+QTI+PDS+GAIDGHLRE GLTFHLLKDVP L+SKNIEK+L EAF PL ISD+NSIFWIAHPGGPAILDQV
Sbjct:  192 EITAVTFRGPSDTHLDSLVGQALFGDGAAAVIVGSDPLPDVEKPLFELVWTAQTIVPDSEGAIDGHLREAGLTFHLLKDVPSLVSKNIEKALVEAFQPLNISDYNSIFWIAHPGGPAILDQV 313
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHS6_SOYBN (Chalcone synthase 6 OS=Glycine max GN=CHS6 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.435e-46
Identity = 93/122 (76.23%), Postives = 102/122 (83.61%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EITAVTFRGP+DTHLDSLVGQALF            P    E+PL++LV T+QTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNI+K+L EAF PLGI D+NSIFWIAHPGGPAILDQV
Sbjct:  192 EITAVTFRGPSDTHLDSLVGQALFGDGAAAVIVGSDP-LPAEKPLFELVWTAQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIQKALVEAFQPLGIDDYNSIFWIAHPGGPAILDQV 312
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHS4_MEDSA (Chalcone synthase 4 OS=Medicago sativa GN=CHS4 PE=2 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 1.435e-46
Identity = 87/122 (71.31%), Postives = 102/122 (83.61%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            E+TAVTFRGP+DTHLDSLVGQALF            P   +E+P++++V T+QTI PDS+GAIDGHLRE GLTFHLLKDVPG++SKNI+K+L EAF PLGISD+NSIFWIAHPGGPAILDQV
Sbjct:  192 EVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNIDKALVEAFQPLGISDYNSIFWIAHPGGPAILDQV 313
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHS2_PEA (Chalcone synthase 2 OS=Pisum sativum GN=CHS2 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.435e-46
Identity = 87/122 (71.31%), Postives = 102/122 (83.61%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            E+TAVTFRGP+DTHLDSLVGQALF            P   +E+P++++V T+QTI PDS+GAIDGHLRE GLTFHLLKDVPG++SKNI+K+L EAF PLGISD+NSIFWIAHPGGPAILDQV
Sbjct:  192 EVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNIDKALVEAFKPLGISDYNSIFWIAHPGGPAILDQV 313
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHS2_SOYBN (Chalcone synthase 2 OS=Glycine max GN=CHS2 PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.874e-46
Identity = 96/122 (78.69%), Postives = 102/122 (83.61%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            EITAVTFRGP DTHLDSLVGQALF            P   VE+PL+QLV T+QTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIEK+L EAF PLGISD+NSIF IAHPGGPAILDQV
Sbjct:  192 EITAVTFRGPTDTHLDSLVGQALFGDGAAAVIVGSDP-LPVEKPLFQLVWTAQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKALVEAFQPLGISDYNSIFRIAHPGGPAILDQV 312
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHS7_MEDSA (Chalcone synthase (Fragment) OS=Medicago sativa GN=CHSII PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 2.447e-46
Identity = 87/122 (71.31%), Postives = 101/122 (82.79%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            E+TAVTFRGP+DTHLDSLVGQALF            P   +E+P++++V T+QTI PDS+GAIDGHLRE GLTFHLLKDVPG++SKNI K+L EAF PLGISD+NSIFWIAHPGGPAILDQV
Sbjct:   68 EVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNINKALVEAFEPLGISDYNSIFWIAHPGGPAILDQV 189
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHS5_MEDSA (Chalcone synthase 4-2 OS=Medicago sativa GN=CHS4-2 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 2.447e-46
Identity = 87/122 (71.31%), Postives = 101/122 (82.79%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            E+TAVTFRGP+DTHLDSLVGQALF            P   +E+P++++V T+QTI PDS+GAIDGHLRE GLTFHLLKDVPG++SKNI K+L EAF PLGISD+NSIFWIAHPGGPAILDQV
Sbjct:  192 EVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNINKALVEAFEPLGISDYNSIFWIAHPGGPAILDQV 313
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHS1_PEA (Chalcone synthase 1 OS=Pisum sativum GN=CHS1 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 2.447e-46
Identity = 87/122 (71.31%), Postives = 102/122 (83.61%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            E+TAVTFRGP+DTHLDSLVGQALF            P   +E+P++++V T+QTI PDS+GAIDGHLRE GLTFHLLKDVPG++SKNI+K+L EAF PLGISD+NSIFWIAHPGGPAILDQV
Sbjct:  192 EVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREQGLTFHLLKDVPGIVSKNIDKALVEAFKPLGISDYNSIFWIAHPGGPAILDQV 313
[Close]
BLAST of CF503878 vs. ExPASy Swiss-Prot
Match: CHS2_MEDSA (Chalcone synthase 2 OS=Medicago sativa GN=CHS2 PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 3.196e-46
Identity = 87/122 (71.31%), Postives = 101/122 (82.79%), Query Frame = 3 
Query:    3 EITAVTFRGPADTHLDSLVGQALFXXXXXXXXXXXXPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEAFAPLGISDWNSIFWIAHPGGPAILDQV 368
            E+TAVTFRGP+DTHLDSLVGQALF            P   +E+P++++V T+QTI PDS+GAIDGHLRE GLTFHLLKDVPG++SKNI K+L EAF PLGISD+NSIFWIAHPGGPAILDQV
Sbjct:  192 EVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIFWIAHPGGPAILDQV 313
The following BLAST results are available for this feature:
BLAST of CF503878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
CHSY_PHAVU8.411e-4774.59Chalcone synthase 17 OS=Phaseolus vulgaris GN=CHS1... [more]
CHSA_PEA1.435e-4674.59Chalcone synthase 1A OS=Pisum sativum GN=CHS-1A PE... [more]
CHS6_SOYBN1.435e-4676.23Chalcone synthase 6 OS=Glycine max GN=CHS6 PE=3 SV... [more]
CHS4_MEDSA1.435e-4671.31Chalcone synthase 4 OS=Medicago sativa GN=CHS4 PE=... [more]
CHS2_PEA1.435e-4671.31Chalcone synthase 2 OS=Pisum sativum GN=CHS2 PE=2 ... [more]
CHS2_SOYBN1.874e-4678.69Chalcone synthase 2 OS=Glycine max GN=CHS2 PE=3 SV... [more]
CHS7_MEDSA2.447e-4671.31Chalcone synthase (Fragment) OS=Medicago sativa GN... [more]
CHS5_MEDSA2.447e-4671.31Chalcone synthase 4-2 OS=Medicago sativa GN=CHS4-2... [more]
CHS1_PEA2.447e-4671.31Chalcone synthase 1 OS=Pisum sativum GN=CHS1 PE=2 ... [more]
CHS2_MEDSA3.196e-4671.31Chalcone synthase 2 OS=Medicago sativa GN=CHS2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-365 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503878 ID=CF503878; Name=CF503878; organism=Citrus sinensis; type=EST; length=370bp
CGGAGATCACGGCAGTCACTTTCCGCGGCCCTGCCGATACTCATCTTGAT
TCTCTTGTGGGCCAGGCTTTGTTCGGTGATGGTGCTGCTGCTGTGATCGT
GGGTGCCGATCCTGACACGTCGGTCGAGCGTCCGTTGTATCAGCTCGTGT
CGACTTCGCAGACGATCCTCCCTGACTCTGACGGTGCAATTGACGGACAC
TTGCGCGAAGTCGGTCTCACTTTCCATTTGCTTAAAGACGTCCCCGGCTT
GATCTCAAAGAATATAGAGAAAAGCCTGTCTGAAGCGTTCGCCCCGCTTG
GCATCAGCGACTGGAACTCGATATTCTGGATCGCTCACCCCGGTGGGCCC
GCAATTCTGGACCAAGTGGA
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