CF503880

Overview
NameCF503880
Unique NameCF503880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length417
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_GEOMG (Elongation factor Tu OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.604e-21
Identity = 48/64 (75.00%), Postives = 56/64 (87.50%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F RTK HVN+GTIGHVDHGKTTLTAAIT+VLAE G+A+   FD+ID APEE++RGITIAT+H
Sbjct:    4 AKFERTKPHVNIGTIGHVDHGKTTLTAAITRVLAERGQAEFKGFDQIDNAPEERERGITIATSH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_BDEBA (Elongation factor Tu OS=Bdellovibrio bacteriovorus GN=tuf PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.604e-21
Identity = 48/66 (72.73%), Postives = 55/66 (83.33%), Query Frame = 3
Query:  219 SMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            S   FTR K HVN+GTIGHVDHGKTTLTAAIT  LA  GKA+A+A+D+IDK+PEEK RGITI+T H
Sbjct:    2 SKEKFTRNKPHVNIGTIGHVDHGKTTLTAAITTTLAASGKAQAMAYDQIDKSPEEKARGITISTTH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_DESVM (Elongation factor Tu OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=tuf PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.095e-21
Identity = 48/62 (77.42%), Postives = 52/62 (83.87%), Query Frame = 3
Query:  231 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            F R K HVN+GTIGH+DHGKTTLTAAITKV    G  K +AFDEIDKAPEEK+RGITIATAH
Sbjct:    6 FERKKPHVNIGTIGHIDHGKTTLTAAITKVAGLRGNGKFVAFDEIDKAPEEKERGITIATAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_DESDG (Elongation factor Tu OS=Desulfovibrio desulfuricans (strain G20) GN=tuf PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.095e-21
Identity = 47/62 (75.81%), Postives = 56/62 (90.32%), Query Frame = 3
Query:  231 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            F RTK HVN+GTIGH+DHGKTTLTAAITK+ + +  +KA+A+DEIDKAPEEK+RGITIATAH
Sbjct:    6 FERTKPHVNIGTIGHIDHGKTTLTAAITKIASLKMGSKAVAYDEIDKAPEEKERGITIATAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_RICHE (Elongation factor Tu OS=Rickettsia helvetica GN=tuf PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.736e-21
Identity = 49/64 (76.56%), Postives = 56/64 (87.50%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F RTK HVN+GTIGHVDHGKT+LTAAIT VLA+ G AKA A+D+ID APEEK+RGITI+TAH
Sbjct:    4 AKFERTKPHVNIGTIGHVDHGKTSLTAAITIVLAKTGGAKATAYDQIDAAPEEKERGITISTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_RICFE (Elongation factor Tu OS=Rickettsia felis GN=tuf PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.736e-21
Identity = 49/64 (76.56%), Postives = 56/64 (87.50%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F RTK HVN+GTIGHVDHGKT+LTAAIT VLA+ G AKA A+D+ID APEEK+RGITI+TAH
Sbjct:    4 AKFERTKPHVNIGTIGHVDHGKTSLTAAITIVLAKTGGAKATAYDQIDAAPEEKERGITISTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_RICTY (Elongation factor Tu OS=Rickettsia typhi GN=tuf PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 3.573e-21
Identity = 48/64 (75.00%), Postives = 56/64 (87.50%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F RTK HVN+GTIGHVDHGKT+LTAAIT +LA+ G AKA A+D+ID APEEK+RGITI+TAH
Sbjct:    4 AKFERTKPHVNIGTIGHVDHGKTSLTAAITIILAKTGGAKATAYDQIDAAPEEKERGITISTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_RICPR (Elongation factor Tu OS=Rickettsia prowazekii GN=tuf PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 3.573e-21
Identity = 48/64 (75.00%), Postives = 56/64 (87.50%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F RTK HVN+GTIGHVDHGKT+LTAAIT +LA+ G AKA A+D+ID APEEK+RGITI+TAH
Sbjct:    4 AKFERTKPHVNIGTIGHVDHGKTSLTAAITIILAKTGGAKATAYDQIDAAPEEKERGITISTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_RHOPA (Elongation factor Tu OS=Rhodopseudomonas palustris GN=tuf1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.573e-21
Identity = 49/64 (76.56%), Postives = 54/64 (84.38%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F RTK H N+GTIGHVDHGKT+LTAAITKVLAE G A   A+D+IDKAPEEK RGITI+TAH
Sbjct:    4 AKFERTKPHCNIGTIGHVDHGKTSLTAAITKVLAETGGATFTAYDQIDKAPEEKARGITISTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_RHOP2 (Elongation factor Tu OS=Rhodopseudomonas palustris (strain HaA2) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.573e-21
Identity = 49/64 (76.56%), Postives = 54/64 (84.38%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F RTK H N+GTIGHVDHGKT+LTAAITKVLAE G A   A+D+IDKAPEEK RGITI+TAH
Sbjct:    4 AKFERTKPHCNIGTIGHVDHGKTSLTAAITKVLAETGGATFTAYDQIDKAPEEKARGITISTAH 67          
The following BLAST results are available for this feature:
BLAST of CF503880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_GEOMG1.604e-2175.00Elongation factor Tu OS=Geobacter metallireducens ... [more]
EFTU_BDEBA1.604e-2172.73Elongation factor Tu OS=Bdellovibrio bacteriovorus... [more]
EFTU_DESVM2.095e-2177.42Elongation factor Tu OS=Desulfovibrio vulgaris (st... [more]
EFTU_DESDG2.095e-2175.81Elongation factor Tu OS=Desulfovibrio desulfurican... [more]
EFTU_RICHE2.736e-2176.56Elongation factor Tu OS=Rickettsia helvetica GN=tu... [more]
EFTU_RICFE2.736e-2176.56Elongation factor Tu OS=Rickettsia felis GN=tuf PE... [more]
EFTU_RICTY3.573e-2175.00Elongation factor Tu OS=Rickettsia typhi GN=tuf PE... [more]
EFTU_RICPR3.573e-2175.00Elongation factor Tu OS=Rickettsia prowazekii GN=t... [more]
EFTU_RHOPA3.573e-2176.56Elongation factor Tu OS=Rhodopseudomonas palustris... [more]
EFTU_RHOP23.573e-2176.56Elongation factor Tu OS=Rhodopseudomonas palustris... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-367 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503880 ID=CF503880; Name=CF503880; organism=Citrus sinensis; type=EST; length=417bp
GTTTTACATACAGCTCGTTTTGAACATACTTTCTCTCACTCGCTCACTCG
GAATCAATGGCTTCGGTGGTTCTTAGAAACCCTAACTCCAAGAGAATTGT
GCCGTTTTCATCCCAAATCTACTCTTGCTGCCGCGGCTCTCTCTCCATCT
CCGACGCTTTCTCCGCAAATGAAACTTCTGCTACTCGCTGCGGCCCCTCT
GTTAACCCCTGGTGGAGATCCATGGCCACCTTCACTCGCACAAAGCTTCA
CGTGAATGTGGGAACAATTGGACACGTTGATCATGGGAAGACTACACTTA
CTGCTGCGATTACCAAGGTGCTAGCAGAAGAAGGGAAAGCAAAAGCTATT
GCCTTTGATGAAATTGACAAGGCCCCTGAAGAGAAGAAGAGAGGAATTAC
TATTGCAACGGCCCATG
back to top