CF503880

Overview
NameCF503880
Unique NameCF503880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length417
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_THEEB (Elongation factor Tu OS=Thermosynechococcus elongatus (strain BP-1) GN=tuf PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.667e-21
Identity = 50/64 (78.12%), Postives = 53/64 (82.81%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F RTK HVNVGTIGHVDHGKTTLTAAIT  LA +GKA+A  +DEID APEEK RGITI TAH
Sbjct:    4 AKFERTKPHVNVGTIGHVDHGKTTLTAAITMTLAAQGKAQARKYDEIDAAPEEKARGITINTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_RICMO (Elongation factor Tu OS=Rickettsia montana GN=tuf PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.667e-21
Identity = 48/64 (75.00%), Postives = 56/64 (87.50%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F RTK HVN+GTIGHVDHGKT+LTAAIT VLA+ G A+A A+D+ID APEEK+RGITI+TAH
Sbjct:    4 AKFERTKPHVNIGTIGHVDHGKTSLTAAITMVLAKTGGAQATAYDQIDAAPEEKERGITISTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_PICGU (Elongation factor Tu, mitochondrial OS=Pichia guilliermondii GN=TUF1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.667e-21
Identity = 52/91 (57.14%), Postives = 67/91 (73.63%), Query Frame = 3
Query:  144 SISDAFSANETSATRCGPSVNPWWRSMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            +++ +F A    A +  PS+    RS A F R+K HVN+GTIGHVDHGKTTLTAAITKVL+E+G A  + +  ID+APEE+ RGITI+TAH
Sbjct:    4 NLAGSFRAVSRVAFKTRPSLV---RSYAAFDRSKPHVNIGTIGHVDHGKTTLTAAITKVLSEKGGANFLDYGSIDRAPEERARGITISTAH 91          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_CLOBM (Elongation factor Tu OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.667e-21
Identity = 48/64 (75.00%), Postives = 55/64 (85.94%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F R+K HVN+GTIGHVDHGKTTLTAAIT VLA++G A A  +DEIDKAPEEK+RGITI T+H
Sbjct:    4 AKFERSKPHVNIGTIGHVDHGKTTLTAAITTVLAQKGGASATKYDEIDKAPEEKERGITINTSH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_CLOBL (Elongation factor Tu OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.667e-21
Identity = 48/64 (75.00%), Postives = 55/64 (85.94%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F R+K HVN+GTIGHVDHGKTTLTAAIT VLA++G A A  +DEIDKAPEEK+RGITI T+H
Sbjct:    4 AKFERSKPHVNIGTIGHVDHGKTTLTAAITTVLAQKGGASATKYDEIDKAPEEKERGITINTSH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_CLOBK (Elongation factor Tu OS=Clostridium botulinum (strain Okra / Type B1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.667e-21
Identity = 48/64 (75.00%), Postives = 55/64 (85.94%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F R+K HVN+GTIGHVDHGKTTLTAAIT VLA++G A A  +DEIDKAPEEK+RGITI T+H
Sbjct:    4 AKFERSKPHVNIGTIGHVDHGKTTLTAAITTVLAQKGGASATKYDEIDKAPEEKERGITINTSH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_CLOBH (Elongation factor Tu OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.667e-21
Identity = 48/64 (75.00%), Postives = 55/64 (85.94%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F R+K HVN+GTIGHVDHGKTTLTAAIT VLA++G A A  +DEIDKAPEEK+RGITI T+H
Sbjct:    4 AKFERSKPHVNIGTIGHVDHGKTTLTAAITTVLAQKGGASATKYDEIDKAPEEKERGITINTSH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_CLOB1 (Elongation factor Tu OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.667e-21
Identity = 48/64 (75.00%), Postives = 55/64 (85.94%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F R+K HVN+GTIGHVDHGKTTLTAAIT VLA++G A A  +DEIDKAPEEK+RGITI T+H
Sbjct:    4 AKFERSKPHVNIGTIGHVDHGKTTLTAAITTVLAQKGGASATKYDEIDKAPEEKERGITINTSH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_ANADF (Elongation factor Tu OS=Anaeromyxobacter sp. (strain Fw109-5) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.667e-21
Identity = 47/62 (75.81%), Postives = 55/62 (88.71%), Query Frame = 3
Query:  231 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            F R K HVNVGTIGHVDHGKTTLTAAITK  A +G+A+ +A+D+IDKAPEE++RGITIATAH
Sbjct:    6 FERNKPHVNVGTIGHVDHGKTTLTAAITKYCATQGRAQFMAYDQIDKAPEERERGITIATAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_PELUB (Elongation factor Tu OS=Pelagibacter ubique GN=tuf PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.095e-21
Identity = 48/66 (72.73%), Postives = 54/66 (81.82%), Query Frame = 3
Query:  219 SMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            S   F R K H N+GTIGHVDHGKTTLTAAIT  LAE G  KA+A+D+IDKAPEEK+RGITI+TAH
Sbjct:    2 SKEKFVRNKPHCNIGTIGHVDHGKTTLTAAITITLAELGGGKAVAYDQIDKAPEEKERGITISTAH 67          
The following BLAST results are available for this feature:
BLAST of CF503880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_THEEB4.667e-2178.13Elongation factor Tu OS=Thermosynechococcus elonga... [more]
EFTU_RICMO4.667e-2175.00Elongation factor Tu OS=Rickettsia montana GN=tuf ... [more]
EFTU_PICGU4.667e-2157.14Elongation factor Tu, mitochondrial OS=Pichia guil... [more]
EFTU_CLOBM4.667e-2175.00Elongation factor Tu OS=Clostridium botulinum (str... [more]
EFTU_CLOBL4.667e-2175.00Elongation factor Tu OS=Clostridium botulinum (str... [more]
EFTU_CLOBK4.667e-2175.00Elongation factor Tu OS=Clostridium botulinum (str... [more]
EFTU_CLOBH4.667e-2175.00Elongation factor Tu OS=Clostridium botulinum (str... [more]
EFTU_CLOB14.667e-2175.00Elongation factor Tu OS=Clostridium botulinum (str... [more]
EFTU_ANADF4.667e-2175.81Elongation factor Tu OS=Anaeromyxobacter sp. (stra... [more]
EFTU_PELUB6.095e-2172.73Elongation factor Tu OS=Pelagibacter ubique GN=tuf... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-367 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503880 ID=CF503880; Name=CF503880; organism=Citrus sinensis; type=EST; length=417bp
GTTTTACATACAGCTCGTTTTGAACATACTTTCTCTCACTCGCTCACTCG
GAATCAATGGCTTCGGTGGTTCTTAGAAACCCTAACTCCAAGAGAATTGT
GCCGTTTTCATCCCAAATCTACTCTTGCTGCCGCGGCTCTCTCTCCATCT
CCGACGCTTTCTCCGCAAATGAAACTTCTGCTACTCGCTGCGGCCCCTCT
GTTAACCCCTGGTGGAGATCCATGGCCACCTTCACTCGCACAAAGCTTCA
CGTGAATGTGGGAACAATTGGACACGTTGATCATGGGAAGACTACACTTA
CTGCTGCGATTACCAAGGTGCTAGCAGAAGAAGGGAAAGCAAAAGCTATT
GCCTTTGATGAAATTGACAAGGCCCCTGAAGAGAAGAAGAGAGGAATTAC
TATTGCAACGGCCCATG
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