CF503880

Overview
NameCF503880
Unique NameCF503880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length417
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_BORBR (Elongation factor Tu OS=Bordetella bronchiseptica GN=tuf1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.307e-18
Identity = 44/62 (70.97%), Postives = 50/62 (80.65%), Query Frame = 3
Query:  231 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            F RTK HVNVGTIGHVDHGKTTLTAAIT VL+ +   +A  +D+ID APEEK RGITI T+H
Sbjct:    6 FERTKPHVNVGTIGHVDHGKTTLTAAITTVLSNKFGGEARGYDQIDAAPEEKARGITINTSH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_BLOPB (Elongation factor Tu OS=Blochmannia pennsylvanicus (strain BPEN) GN=tuf PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.307e-18
Identity = 45/66 (68.18%), Postives = 51/66 (77.27%), Query Frame = 3
Query:  219 SMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            S   F R K H+NVGTIGHVDHGKTTLTAAIT VL+++    A AFD+ID APEEK RGITI T+H
Sbjct:    2 SKEKFKRIKPHINVGTIGHVDHGKTTLTAAITTVLSKKYGGYARAFDQIDNAPEEKARGITINTSH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_BACP2 (Elongation factor Tu OS=Bacillus pumilus (strain SAFR-032) GN=tuf PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.307e-18
Identity = 43/63 (68.25%), Postives = 53/63 (84.13%), Query Frame = 3
Query:  231 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVL-AEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            F R+K H N+GTIGHVDHGKTTLTAAI+ VL  + GK  A+A+D+ID APEE++RGITI+TAH
Sbjct:    6 FDRSKSHANIGTIGHVDHGKTTLTAAISTVLHKKSGKGTAMAYDQIDGAPEERERGITISTAH 68          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_BACA2 (Elongation factor Tu OS=Bacillus amyloliquefaciens (strain FZB42) GN=tuf PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.307e-18
Identity = 43/63 (68.25%), Postives = 53/63 (84.13%), Query Frame = 3
Query:  231 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVL-AEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            F R+K H N+GTIGHVDHGKTTLTAAI+ VL  + GK  A+A+D+ID APEE++RGITI+TAH
Sbjct:    6 FDRSKSHANIGTIGHVDHGKTTLTAAISTVLHKKSGKGTAMAYDQIDGAPEERERGITISTAH 68          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_ANAPZ (Elongation factor Tu OS=Anaplasma phagocytophilum (strain HZ) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.307e-18
Identity = 44/60 (73.33%), Postives = 50/60 (83.33%), Query Frame = 3
Query:  243 KLHVNVGTIGHVDHGKTTLTAAITKVLAEE--GKAKAIAFDEIDKAPEEKKRGITIATAH 416
            K H+NVGTIGHVDHGKTTLTAA+T VLA +  G  K + +DEIDKAPEEK RGITI+TAH
Sbjct:    6 KPHINVGTIGHVDHGKTTLTAALTTVLARKLSGANKVVKYDEIDKAPEEKARGITISTAH 65          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU3_STRCO (Elongation factor Tu-3 OS=Streptomyces coelicolor GN=tuf3 PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 6.307e-18
Identity = 44/69 (63.77%), Postives = 51/69 (73.91%), Query Frame = 3
Query:  219 SMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKA---IAFDEIDKAPEEKKRGITIATAH 416
            S   + RTK H+N+GT+GHVDHGKTTLTAAITKVLAE G       ++FD ID+APEE  RGITI  AH
Sbjct:    2 SKTAYVRTKPHLNIGTMGHVDHGKTTLTAAITKVLAERGAGSTTQYVSFDRIDRAPEEAARGITINIAH 70          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU1_STRRA (Elongation factor Tu-1 OS=Streptomyces ramocissimus GN=tuf1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.307e-18
Identity = 46/66 (69.70%), Postives = 52/66 (78.79%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVL--AEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F RTK HVN+GTIGH+DHGKTTLTAAITKVL  A     +A  FD IDKAPEE++RGITI+ AH
Sbjct:    4 AKFERTKPHVNIGTIGHIDHGKTTLTAAITKVLHDAYPDLNEATPFDNIDKAPEERQRGITISIAH 69          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU1_ACISJ (Elongation factor Tu 1 OS=Acidovorax sp. (strain JS42) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.307e-18
Identity = 44/62 (70.97%), Postives = 50/62 (80.65%), Query Frame = 3
Query:  231 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            F RTK HVNVGTIGHVDHGKTTLTAAI  VLA++   +A  +D+ID APEEK RGITI T+H
Sbjct:    6 FERTKPHVNVGTIGHVDHGKTTLTAAIATVLAKKFGGEAKGYDQIDNAPEEKARGITINTSH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_STAHJ (Elongation factor Tu OS=Staphylococcus haemolyticus (strain JCSC1435) GN=tuf PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.237e-18
Identity = 43/62 (69.35%), Postives = 49/62 (79.03%), Query Frame = 3
Query:  231 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            F R+K H N+GTIGHVDHGKTTLTAAI  VLA+ G   A ++D ID APEEK+RGITI TAH
Sbjct:    6 FDRSKEHANIGTIGHVDHGKTTLTAAIATVLAKNGDTVAQSYDMIDNAPEEKERGITINTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_STAES (Elongation factor Tu OS=Staphylococcus epidermidis (strain ATCC 12228) GN=tuf PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.237e-18
Identity = 43/62 (69.35%), Postives = 49/62 (79.03%), Query Frame = 3
Query:  231 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            F R+K H N+GTIGHVDHGKTTLTAAI  VLA+ G   A ++D ID APEEK+RGITI TAH
Sbjct:    6 FDRSKEHANIGTIGHVDHGKTTLTAAIATVLAKNGDTVAQSYDMIDNAPEEKERGITINTAH 67          
The following BLAST results are available for this feature:
BLAST of CF503880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_BORBR6.307e-1870.97Elongation factor Tu OS=Bordetella bronchiseptica ... [more]
EFTU_BLOPB6.307e-1868.18Elongation factor Tu OS=Blochmannia pennsylvanicus... [more]
EFTU_BACP26.307e-1868.25Elongation factor Tu OS=Bacillus pumilus (strain S... [more]
EFTU_BACA26.307e-1868.25Elongation factor Tu OS=Bacillus amyloliquefaciens... [more]
EFTU_ANAPZ6.307e-1873.33Elongation factor Tu OS=Anaplasma phagocytophilum ... [more]
EFTU3_STRCO6.307e-1863.77Elongation factor Tu-3 OS=Streptomyces coelicolor ... [more]
EFTU1_STRRA6.307e-1869.70Elongation factor Tu-1 OS=Streptomyces ramocissimu... [more]
EFTU1_ACISJ6.307e-1870.97Elongation factor Tu 1 OS=Acidovorax sp. (strain J... [more]
EFTU_STAHJ8.237e-1869.35Elongation factor Tu OS=Staphylococcus haemolyticu... [more]
EFTU_STAES8.237e-1869.35Elongation factor Tu OS=Staphylococcus epidermidis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-367 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503880 ID=CF503880; Name=CF503880; organism=Citrus sinensis; type=EST; length=417bp
GTTTTACATACAGCTCGTTTTGAACATACTTTCTCTCACTCGCTCACTCG
GAATCAATGGCTTCGGTGGTTCTTAGAAACCCTAACTCCAAGAGAATTGT
GCCGTTTTCATCCCAAATCTACTCTTGCTGCCGCGGCTCTCTCTCCATCT
CCGACGCTTTCTCCGCAAATGAAACTTCTGCTACTCGCTGCGGCCCCTCT
GTTAACCCCTGGTGGAGATCCATGGCCACCTTCACTCGCACAAAGCTTCA
CGTGAATGTGGGAACAATTGGACACGTTGATCATGGGAAGACTACACTTA
CTGCTGCGATTACCAAGGTGCTAGCAGAAGAAGGGAAAGCAAAAGCTATT
GCCTTTGATGAAATTGACAAGGCCCCTGAAGAGAAGAAGAGAGGAATTAC
TATTGCAACGGCCCATG
back to top