CF503880

Overview
NameCF503880
Unique NameCF503880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length417
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_RICAE (Elongation factor Tu OS=Rickettsia africae (strain ESF-5) GN=tuf PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.960e-21
Identity = 48/64 (75.00%), Postives = 56/64 (87.50%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F RTK HVN+GTIGHVDHGKT+LTAAIT VLA+ G A+A A+D+ID APEEK+RGITI+TAH
Sbjct:    4 AKFERTKPHVNIGTIGHVDHGKTSLTAAITIVLAKTGGAQATAYDQIDAAPEEKERGITISTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_CLOTE (Elongation factor Tu OS=Clostridium tetani GN=tufA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.960e-21
Identity = 46/62 (74.19%), Postives = 54/62 (87.10%), Query Frame = 3
Query:  231 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            F R+K HVN+GTIGHVDHGKTTLTAAIT +L  +G AKA  +DEIDKAPEEK+RGITI+T+H
Sbjct:    6 FERSKPHVNIGTIGHVDHGKTTLTAAITTILGHKGFAKAFKYDEIDKAPEEKERGITISTSH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU2_PELCD (Elongation factor Tu 2 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.960e-21
Identity = 48/66 (72.73%), Postives = 55/66 (83.33%), Query Frame = 3
Query:  219 SMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            S A F RTK HVN+GTIGHVDHGKTTLTAAIT+ +A  G A+  AFD+ID APEE++RGITIATAH
Sbjct:    2 SKAKFERTKPHVNIGTIGHVDHGKTTLTAAITQTMAARGLAEFKAFDQIDNAPEERERGITIATAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU2_DESPS (Elongation factor Tu 2 OS=Desulfotalea psychrophila GN=tuf2 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.960e-21
Identity = 48/66 (72.73%), Postives = 55/66 (83.33%), Query Frame = 3
Query:  219 SMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            S   F RTK HVNVGTIGH+DHGKTTLTAAIT+VL+ +G+A    F +IDKAPEEK+RGITIATAH
Sbjct:    2 SKEKFERTKPHVNVGTIGHIDHGKTTLTAAITRVLSTKGQASFTDFSDIDKAPEEKERGITIATAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU1_PELCD (Elongation factor Tu 1 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.960e-21
Identity = 48/66 (72.73%), Postives = 55/66 (83.33%), Query Frame = 3
Query:  219 SMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            S A F RTK HVN+GTIGHVDHGKTTLTAAIT+ +A  G A+  AFD+ID APEE++RGITIATAH
Sbjct:    2 SKAKFERTKPHVNIGTIGHVDHGKTTLTAAITQTMAARGLAEFKAFDQIDNAPEERERGITIATAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU1_DESPS (Elongation factor Tu 1 OS=Desulfotalea psychrophila GN=tuf1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.960e-21
Identity = 48/66 (72.73%), Postives = 55/66 (83.33%), Query Frame = 3
Query:  219 SMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            S   F RTK HVNVGTIGH+DHGKTTLTAAIT+VL+ +G+A    F +IDKAPEEK+RGITIATAH
Sbjct:    2 SKEKFERTKPHVNVGTIGHIDHGKTTLTAAITRVLSTKGQASFTDFSDIDKAPEEKERGITIATAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_GEOSW (Elongation factor Tu OS=Geobacillus sp. (strain WCH70) GN=tuf PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.040e-20
Identity = 46/62 (74.19%), Postives = 56/62 (90.32%), Query Frame = 3
Query:  231 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            F R K HVN+GTIGHVDHGKTTLTAAIT VLA++GKA+A A+D+ID APEE++RGITI+T+H
Sbjct:    6 FERKKPHVNIGTIGHVDHGKTTLTAAITAVLAKQGKAQARAYDQIDAAPEERERGITISTSH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_DESAH (Elongation factor Tu OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=tuf PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.040e-20
Identity = 47/62 (75.81%), Postives = 53/62 (85.48%), Query Frame = 3
Query:  231 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            F RTK HVN+GTIGH+DHGKTTLTAAITK  A  G  K +AFDEIDKAPEE++RGITI+TAH
Sbjct:    6 FERTKPHVNIGTIGHIDHGKTTLTAAITKHAALRGFGKFVAFDEIDKAPEERERGITISTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_DESAD (Elongation factor Tu OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=tuf PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.040e-20
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F R K HVN+GTIGH+DHGKTTLTAAITK+    G    +AFDEIDKAPEEK+RGITIATAH
Sbjct:    4 AKFERGKPHVNIGTIGHIDHGKTTLTAAITKIAGLAGNGDYVAFDEIDKAPEEKERGITIATAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_STIAU (Elongation factor Tu OS=Stigmatella aurantiaca GN=tuf PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.358e-20
Identity = 46/62 (74.19%), Postives = 55/62 (88.71%), Query Frame = 3
Query:  231 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            F R K HVN+GTIGHVDHGKT+LTAAITKVLA+ G A  +A+D+IDKAPEE++RGITI+TAH
Sbjct:    6 FERNKPHVNIGTIGHVDHGKTSLTAAITKVLAKTGGATFLAYDQIDKAPEERERGITISTAH 67          
The following BLAST results are available for this feature:
BLAST of CF503880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_RICAE7.960e-2175.00Elongation factor Tu OS=Rickettsia africae (strain... [more]
EFTU_CLOTE7.960e-2174.19Elongation factor Tu OS=Clostridium tetani GN=tufA... [more]
EFTU2_PELCD7.960e-2172.73Elongation factor Tu 2 OS=Pelobacter carbinolicus ... [more]
EFTU2_DESPS7.960e-2172.73Elongation factor Tu 2 OS=Desulfotalea psychrophil... [more]
EFTU1_PELCD7.960e-2172.73Elongation factor Tu 1 OS=Pelobacter carbinolicus ... [more]
EFTU1_DESPS7.960e-2172.73Elongation factor Tu 1 OS=Desulfotalea psychrophil... [more]
EFTU_GEOSW1.040e-2074.19Elongation factor Tu OS=Geobacillus sp. (strain WC... [more]
EFTU_DESAH1.040e-2075.81Elongation factor Tu OS=Desulfobacterium autotroph... [more]
EFTU_DESAD1.040e-2073.44Elongation factor Tu OS=Desulfovibrio salexigens (... [more]
EFTU_STIAU1.358e-2074.19Elongation factor Tu OS=Stigmatella aurantiaca GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-367 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503880 ID=CF503880; Name=CF503880; organism=Citrus sinensis; type=EST; length=417bp
GTTTTACATACAGCTCGTTTTGAACATACTTTCTCTCACTCGCTCACTCG
GAATCAATGGCTTCGGTGGTTCTTAGAAACCCTAACTCCAAGAGAATTGT
GCCGTTTTCATCCCAAATCTACTCTTGCTGCCGCGGCTCTCTCTCCATCT
CCGACGCTTTCTCCGCAAATGAAACTTCTGCTACTCGCTGCGGCCCCTCT
GTTAACCCCTGGTGGAGATCCATGGCCACCTTCACTCGCACAAAGCTTCA
CGTGAATGTGGGAACAATTGGACACGTTGATCATGGGAAGACTACACTTA
CTGCTGCGATTACCAAGGTGCTAGCAGAAGAAGGGAAAGCAAAAGCTATT
GCCTTTGATGAAATTGACAAGGCCCCTGAAGAGAAGAAGAGAGGAATTAC
TATTGCAACGGCCCATG
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