CF503880

Overview
NameCF503880
Unique NameCF503880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length417
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_DESVV (Elongation factor Tu OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=tuf PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.773e-20
Identity = 47/62 (75.81%), Postives = 52/62 (83.87%), Query Frame = 3
Query:  231 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            F R K HVN+GTIGH+DHGKTTLTAAITK     G+ K IA+DEIDKAPEEK+RGITIATAH
Sbjct:    6 FERKKPHVNIGTIGHIDHGKTTLTAAITKTAGLLGQGKFIAYDEIDKAPEEKERGITIATAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_DESVH (Elongation factor Tu OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=tuf PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.773e-20
Identity = 47/62 (75.81%), Postives = 52/62 (83.87%), Query Frame = 3
Query:  231 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            F R K HVN+GTIGH+DHGKTTLTAAITK     G+ K IA+DEIDKAPEEK+RGITIATAH
Sbjct:    6 FERKKPHVNIGTIGHIDHGKTTLTAAITKTAGLLGQGKFIAYDEIDKAPEEKERGITIATAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_CYAP8 (Elongation factor Tu OS=Cyanothece sp. (strain PCC 8801) GN=tuf PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.773e-20
Identity = 48/64 (75.00%), Postives = 53/64 (82.81%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F RTK HVN+GTIGHVDHGKTTLTAAIT  LA +GKAKA  +++ID APEEK RGITI TAH
Sbjct:    4 AKFERTKPHVNIGTIGHVDHGKTTLTAAITMTLAAQGKAKARNYEDIDAAPEEKARGITINTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_CLOTH (Elongation factor Tu OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=tuf PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.773e-20
Identity = 46/66 (69.70%), Postives = 56/66 (84.85%), Query Frame = 3
Query:  219 SMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            S A F RTK HVN+GTIGHVDHGKT+LTAAITKVL  +GKA   +++ IDKAPEE++RGITI+T+H
Sbjct:    2 SKAKFERTKPHVNIGTIGHVDHGKTSLTAAITKVLGFQGKANYTSYENIDKAPEERERGITISTSH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_BRASO (Elongation factor Tu OS=Bradyrhizobium sp. (strain ORS278) GN=tuf PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.773e-20
Identity = 47/64 (73.44%), Postives = 53/64 (82.81%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F R K H N+GTIGHVDHGKT+LTAAITK+LAE G A   A+D+IDKAPEEK RGITI+TAH
Sbjct:    4 AKFERNKPHCNIGTIGHVDHGKTSLTAAITKILAETGGATFTAYDQIDKAPEEKARGITISTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_BRASB (Elongation factor Tu OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=tuf PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.773e-20
Identity = 47/64 (73.44%), Postives = 53/64 (82.81%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F R K H N+GTIGHVDHGKT+LTAAITK+LAE G A   A+D+IDKAPEEK RGITI+TAH
Sbjct:    4 AKFERNKPHCNIGTIGHVDHGKTSLTAAITKILAETGGATFTAYDQIDKAPEEKARGITISTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_BRAJA (Elongation factor Tu OS=Bradyrhizobium japonicum GN=tuf PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.773e-20
Identity = 47/64 (73.44%), Postives = 53/64 (82.81%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F R K H N+GTIGHVDHGKT+LTAAITK+LAE G A   A+D+IDKAPEEK RGITI+TAH
Sbjct:    4 AKFERNKPHCNIGTIGHVDHGKTSLTAAITKILAETGGATFTAYDQIDKAPEEKARGITISTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_MYCPE (Elongation factor Tu OS=Mycoplasma penetrans GN=tuf PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.316e-20
Identity = 46/62 (74.19%), Postives = 53/62 (85.48%), Query Frame = 3
Query:  231 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            F R+K HVN+GTIGH+DHGKTTLTAAI   LA++G AKA+ +DEIDKAPEEK RGITI TAH
Sbjct:    6 FDRSKAHVNIGTIGHIDHGKTTLTAAICTYLAKKGGAKAMKYDEIDKAPEEKARGITINTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_MYCGE (Elongation factor Tu OS=Mycoplasma genitalium GN=tuf PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.316e-20
Identity = 47/62 (75.81%), Postives = 53/62 (85.48%), Query Frame = 3
Query:  231 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            F R+K HVNVGTIGH+DHGKTTLTAAI  VLA+EGK+ A  +DEIDKAPEEK RGITI +AH
Sbjct:    6 FDRSKPHVNVGTIGHIDHGKTTLTAAICTVLAKEGKSAATRYDEIDKAPEEKARGITINSAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_BAUCH (Elongation factor Tu OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=tuf PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.316e-20
Identity = 48/66 (72.73%), Postives = 53/66 (80.30%), Query Frame = 3
Query:  219 SMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            S   F RTKLH+NVGTIGHVDHGKTTLTAAIT VLA+     A+AFD+ID APEEK RGITI T+H
Sbjct:    2 SKEKFQRTKLHINVGTIGHVDHGKTTLTAAITAVLAKAYGGNALAFDQIDNAPEEKARGITINTSH 67          
The following BLAST results are available for this feature:
BLAST of CF503880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_DESVV1.773e-2075.81Elongation factor Tu OS=Desulfovibrio vulgaris sub... [more]
EFTU_DESVH1.773e-2075.81Elongation factor Tu OS=Desulfovibrio vulgaris (st... [more]
EFTU_CYAP81.773e-2075.00Elongation factor Tu OS=Cyanothece sp. (strain PCC... [more]
EFTU_CLOTH1.773e-2069.70Elongation factor Tu OS=Clostridium thermocellum (... [more]
EFTU_BRASO1.773e-2073.44Elongation factor Tu OS=Bradyrhizobium sp. (strain... [more]
EFTU_BRASB1.773e-2073.44Elongation factor Tu OS=Bradyrhizobium sp. (strain... [more]
EFTU_BRAJA1.773e-2073.44Elongation factor Tu OS=Bradyrhizobium japonicum G... [more]
EFTU_MYCPE2.316e-2074.19Elongation factor Tu OS=Mycoplasma penetrans GN=tu... [more]
EFTU_MYCGE2.316e-2075.81Elongation factor Tu OS=Mycoplasma genitalium GN=t... [more]
EFTU_BAUCH2.316e-2072.73Elongation factor Tu OS=Baumannia cicadellinicola ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-367 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503880 ID=CF503880; Name=CF503880; organism=Citrus sinensis; type=EST; length=417bp
GTTTTACATACAGCTCGTTTTGAACATACTTTCTCTCACTCGCTCACTCG
GAATCAATGGCTTCGGTGGTTCTTAGAAACCCTAACTCCAAGAGAATTGT
GCCGTTTTCATCCCAAATCTACTCTTGCTGCCGCGGCTCTCTCTCCATCT
CCGACGCTTTCTCCGCAAATGAAACTTCTGCTACTCGCTGCGGCCCCTCT
GTTAACCCCTGGTGGAGATCCATGGCCACCTTCACTCGCACAAAGCTTCA
CGTGAATGTGGGAACAATTGGACACGTTGATCATGGGAAGACTACACTTA
CTGCTGCGATTACCAAGGTGCTAGCAGAAGAAGGGAAAGCAAAAGCTATT
GCCTTTGATGAAATTGACAAGGCCCCTGAAGAGAAGAAGAGAGGAATTAC
TATTGCAACGGCCCATG
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