CF503880

Overview
NameCF503880
Unique NameCF503880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length417
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_PEDPA (Elongation factor Tu OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=tuf PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.025e-20
Identity = 47/62 (75.81%), Postives = 54/62 (87.10%), Query Frame = 3
Query:  231 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            + RTK HVN+GTIGHVDHGKTTLTAAITKVL+E+G AKA  + +ID APEEK+RGITI TAH
Sbjct:    6 YERTKPHVNIGTIGHVDHGKTTLTAAITKVLSEKGLAKASDYADIDAAPEEKERGITINTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_NITWN (Elongation factor Tu OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=tuf PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.025e-20
Identity = 47/64 (73.44%), Postives = 53/64 (82.81%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F R K H N+GTIGHVDHGKT+LTAAITKVLAE G A   A+D+IDKAPEEK RGITI+T+H
Sbjct:    4 AKFERNKPHCNIGTIGHVDHGKTSLTAAITKVLAEAGGATFTAYDQIDKAPEEKARGITISTSH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_NITHX (Elongation factor Tu OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=tuf PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.025e-20
Identity = 47/64 (73.44%), Postives = 53/64 (82.81%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F R K H N+GTIGHVDHGKT+LTAAITKVLAE G A   A+D+IDKAPEEK RGITI+T+H
Sbjct:    4 AKFERNKPHCNIGTIGHVDHGKTSLTAAITKVLAEAGGATFTAYDQIDKAPEEKARGITISTSH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_METSB (Elongation factor Tu OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=tuf PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.025e-20
Identity = 47/62 (75.81%), Postives = 52/62 (83.87%), Query Frame = 3
Query:  231 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            F R K H N+GTIGHVDHGKT+LTAAITKVLAE G A   A+D+IDKAPEEK RGITI+TAH
Sbjct:    6 FQRNKPHCNIGTIGHVDHGKTSLTAAITKVLAETGGATYTAYDQIDKAPEEKARGITISTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_METI4 (Elongation factor Tu OS=Methylacidiphilum infernorum (isolate V4) GN=tuf PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.025e-20
Identity = 46/62 (74.19%), Postives = 55/62 (88.71%), Query Frame = 3
Query:  231 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            F R K H+NVGTIGHVDHGKTTLT+AIT VLA++G A+ +A+D+IDKAPEEK+RGITI TAH
Sbjct:    6 FLRKKPHINVGTIGHVDHGKTTLTSAITYVLAKKGLAQKMAYDQIDKAPEEKERGITINTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_GRABC (Elongation factor Tu OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=tuf PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.025e-20
Identity = 47/64 (73.44%), Postives = 53/64 (82.81%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F R K H N+GTIGHVDHGKT+LTAAITKVLAE G A   A+D+IDKAPEE+ RGITI+TAH
Sbjct:    4 AKFERNKPHCNIGTIGHVDHGKTSLTAAITKVLAETGGATFTAYDQIDKAPEERARGITISTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_GLUOX (Elongation factor Tu OS=Gluconobacter oxydans GN=tuf PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.025e-20
Identity = 47/64 (73.44%), Postives = 54/64 (84.38%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F RTK H N+GTIGHVDHGKT+LTAAITKVLA+ G A   A+D+IDKAPEE+ RGITI+TAH
Sbjct:    4 AKFERTKPHCNIGTIGHVDHGKTSLTAAITKVLAKTGGATYSAYDQIDKAPEERARGITISTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_FLAPJ (Elongation factor Tu OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=tuf PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.025e-20
Identity = 45/63 (71.43%), Postives = 55/63 (87.30%), Query Frame = 3
Query:  228 TFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            TF R+K H+N+GTIGHVDHGKTTLTAAITKVL++ G  +A +FD+ID APEEK+RGITI T+H
Sbjct:    5 TFNRSKPHLNIGTIGHVDHGKTTLTAAITKVLSDAGYCQAKSFDQIDNAPEEKERGITINTSH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU2_SYNWW (Elongation factor Tu 2 OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.025e-20
Identity = 44/64 (68.75%), Postives = 56/64 (87.50%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A + RTK H+N+GTIGH+DHGKTTLTAAITK L++ G AKA +++EIDKAPEE++RGITI T+H
Sbjct:    4 AKYERTKPHLNIGTIGHIDHGKTTLTAAITKTLSQVGGAKATSYEEIDKAPEERERGITINTSH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU1_SYNWW (Elongation factor Tu 1 OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.025e-20
Identity = 44/64 (68.75%), Postives = 56/64 (87.50%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A + RTK H+N+GTIGH+DHGKTTLTAAITK L++ G AKA +++EIDKAPEE++RGITI T+H
Sbjct:    4 AKYERTKPHLNIGTIGHIDHGKTTLTAAITKTLSQVGGAKATSYEEIDKAPEERERGITINTSH 67          
The following BLAST results are available for this feature:
BLAST of CF503880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_PEDPA3.025e-2075.81Elongation factor Tu OS=Pediococcus pentosaceus (s... [more]
EFTU_NITWN3.025e-2073.44Elongation factor Tu OS=Nitrobacter winogradskyi (... [more]
EFTU_NITHX3.025e-2073.44Elongation factor Tu OS=Nitrobacter hamburgensis (... [more]
EFTU_METSB3.025e-2075.81Elongation factor Tu OS=Methylocella silvestris (s... [more]
EFTU_METI43.025e-2074.19Elongation factor Tu OS=Methylacidiphilum infernor... [more]
EFTU_GRABC3.025e-2073.44Elongation factor Tu OS=Granulibacter bethesdensis... [more]
EFTU_GLUOX3.025e-2073.44Elongation factor Tu OS=Gluconobacter oxydans GN=t... [more]
EFTU_FLAPJ3.025e-2071.43Elongation factor Tu OS=Flavobacterium psychrophil... [more]
EFTU2_SYNWW3.025e-2068.75Elongation factor Tu 2 OS=Syntrophomonas wolfei su... [more]
EFTU1_SYNWW3.025e-2068.75Elongation factor Tu 1 OS=Syntrophomonas wolfei su... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-367 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503880 ID=CF503880; Name=CF503880; organism=Citrus sinensis; type=EST; length=417bp
GTTTTACATACAGCTCGTTTTGAACATACTTTCTCTCACTCGCTCACTCG
GAATCAATGGCTTCGGTGGTTCTTAGAAACCCTAACTCCAAGAGAATTGT
GCCGTTTTCATCCCAAATCTACTCTTGCTGCCGCGGCTCTCTCTCCATCT
CCGACGCTTTCTCCGCAAATGAAACTTCTGCTACTCGCTGCGGCCCCTCT
GTTAACCCCTGGTGGAGATCCATGGCCACCTTCACTCGCACAAAGCTTCA
CGTGAATGTGGGAACAATTGGACACGTTGATCATGGGAAGACTACACTTA
CTGCTGCGATTACCAAGGTGCTAGCAGAAGAAGGGAAAGCAAAAGCTATT
GCCTTTGATGAAATTGACAAGGCCCCTGAAGAGAAGAAGAGAGGAATTAC
TATTGCAACGGCCCATG
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