CF503880

Overview
NameCF503880
Unique NameCF503880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length417
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_PARL1 (Elongation factor Tu OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.951e-20
Identity = 47/62 (75.81%), Postives = 52/62 (83.87%), Query Frame = 3
Query:  231 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            F R K H N+GTIGHVDHGKT+LTAAITKVLAE G A   A+D+IDKAPEEK RGITI+TAH
Sbjct:    6 FERNKPHCNIGTIGHVDHGKTSLTAAITKVLAETGGATYSAYDQIDKAPEEKARGITISTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_LACH4 (Elongation factor Tu OS=Lactobacillus helveticus (strain DPC 4571) GN=tuf PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.951e-20
Identity = 47/62 (75.81%), Postives = 53/62 (85.48%), Query Frame = 3
Query:  231 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            + RTK HVN+GTIGHVDHGKTTLTAAIT VLAE+G AKA  + +ID APEEK+RGITI TAH
Sbjct:    7 YVRTKPHVNIGTIGHVDHGKTTLTAAITTVLAEKGLAKAEDYSQIDAAPEEKERGITINTAH 68          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_LACAC (Elongation factor Tu OS=Lactobacillus acidophilus GN=tuf PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.951e-20
Identity = 47/62 (75.81%), Postives = 53/62 (85.48%), Query Frame = 3
Query:  231 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            + RTK HVN+GTIGHVDHGKTTLTAAIT VLAE+G AKA  + +ID APEEK+RGITI TAH
Sbjct:    7 YVRTKPHVNIGTIGHVDHGKTTLTAAITTVLAEKGLAKAEDYSQIDAAPEEKERGITINTAH 68          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_GLOVI (Elongation factor Tu OS=Gloeobacter violaceus GN=tufA PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 3.951e-20
Identity = 48/64 (75.00%), Postives = 52/64 (81.25%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F R K HVN+GTIGHVDHGKTTLTAAIT  LA  G+AKA  +DEID+APEEK RGITI TAH
Sbjct:    4 AKFERNKPHVNIGTIGHVDHGKTTLTAAITMTLAALGRAKAKKYDEIDQAPEEKARGITINTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_CYAP7 (Elongation factor Tu OS=Cyanothece sp. (strain PCC 7424) GN=tuf PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.951e-20
Identity = 48/64 (75.00%), Postives = 52/64 (81.25%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F RTK HVN+GTIGHVDHGKTTLTAAIT  LA +GKAKA  + +ID APEEK RGITI TAH
Sbjct:    4 AKFERTKPHVNIGTIGHVDHGKTTLTAAITMALAAQGKAKARKYADIDAAPEEKARGITINTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_CHLP8 (Elongation factor Tu OS=Chlorobaculum parvum (strain NCIB 8327) GN=tuf PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.951e-20
Identity = 46/63 (73.02%), Postives = 54/63 (85.71%), Query Frame = 3
Query:  228 TFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            ++ R K HVN+GTIGHVDHGKTTLTAAIT VLA+ GKA A  F +IDKAPEE++RGITI+TAH
Sbjct:    5 SYKRDKPHVNIGTIGHVDHGKTTLTAAITSVLAKSGKAAAREFGDIDKAPEERERGITISTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_AERS4 (Elongation factor Tu OS=Aeromonas salmonicida (strain A449) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.951e-20
Identity = 48/66 (72.73%), Postives = 53/66 (80.30%), Query Frame = 3
Query:  219 SMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            S   F R K HVNVGTIGHVDHGKTTLTAAIT VLA+    KA AFD+IDKAPEE++RGITI T+H
Sbjct:    2 SKEKFERNKPHVNVGTIGHVDHGKTTLTAAITNVLAKHFGGKAFAFDQIDKAPEERERGITINTSH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_AERHH (Elongation factor Tu OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.951e-20
Identity = 48/66 (72.73%), Postives = 53/66 (80.30%), Query Frame = 3
Query:  219 SMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            S   F R K HVNVGTIGHVDHGKTTLTAAIT VLA+    KA AFD+IDKAPEE++RGITI T+H
Sbjct:    2 SKEKFERNKPHVNVGTIGHVDHGKTTLTAAITNVLAKHFGGKAFAFDQIDKAPEERERGITINTSH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_ACICJ (Elongation factor Tu OS=Acidiphilium cryptum (strain JF-5) GN=tuf PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.951e-20
Identity = 48/64 (75.00%), Postives = 52/64 (81.25%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F RTK H N+GTIGHVDHGKT+LTAAITKVLAE G A   A+D ID APEE+ RGITIATAH
Sbjct:    4 AKFERTKPHCNIGTIGHVDHGKTSLTAAITKVLAESGGATFRAYDSIDAAPEERARGITIATAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU1_PELTS (Elongation factor Tu 1 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.951e-20
Identity = 47/62 (75.81%), Postives = 52/62 (83.87%), Query Frame = 3
Query:  231 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            F RTK HVN+GTIGHVDHGKTTLTAAIT VLA  GKA+   +DEID APEE++RGITI TAH
Sbjct:    6 FERTKPHVNIGTIGHVDHGKTTLTAAITMVLATVGKAQVKKYDEIDNAPEERERGITINTAH 67          
The following BLAST results are available for this feature:
BLAST of CF503880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_PARL13.951e-2075.81Elongation factor Tu OS=Parvibaculum lavamentivora... [more]
EFTU_LACH43.951e-2075.81Elongation factor Tu OS=Lactobacillus helveticus (... [more]
EFTU_LACAC3.951e-2075.81Elongation factor Tu OS=Lactobacillus acidophilus ... [more]
EFTU_GLOVI3.951e-2075.00Elongation factor Tu OS=Gloeobacter violaceus GN=t... [more]
EFTU_CYAP73.951e-2075.00Elongation factor Tu OS=Cyanothece sp. (strain PCC... [more]
EFTU_CHLP83.951e-2073.02Elongation factor Tu OS=Chlorobaculum parvum (stra... [more]
EFTU_AERS43.951e-2072.73Elongation factor Tu OS=Aeromonas salmonicida (str... [more]
EFTU_AERHH3.951e-2072.73Elongation factor Tu OS=Aeromonas hydrophila subsp... [more]
EFTU_ACICJ3.951e-2075.00Elongation factor Tu OS=Acidiphilium cryptum (stra... [more]
EFTU1_PELTS3.951e-2075.81Elongation factor Tu 1 OS=Pelotomaculum thermoprop... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-367 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503880 ID=CF503880; Name=CF503880; organism=Citrus sinensis; type=EST; length=417bp
GTTTTACATACAGCTCGTTTTGAACATACTTTCTCTCACTCGCTCACTCG
GAATCAATGGCTTCGGTGGTTCTTAGAAACCCTAACTCCAAGAGAATTGT
GCCGTTTTCATCCCAAATCTACTCTTGCTGCCGCGGCTCTCTCTCCATCT
CCGACGCTTTCTCCGCAAATGAAACTTCTGCTACTCGCTGCGGCCCCTCT
GTTAACCCCTGGTGGAGATCCATGGCCACCTTCACTCGCACAAAGCTTCA
CGTGAATGTGGGAACAATTGGACACGTTGATCATGGGAAGACTACACTTA
CTGCTGCGATTACCAAGGTGCTAGCAGAAGAAGGGAAAGCAAAAGCTATT
GCCTTTGATGAAATTGACAAGGCCCCTGAAGAGAAGAAGAGAGGAATTAC
TATTGCAACGGCCCATG
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