CF503891

Overview
NameCF503891
Unique NameCF503891
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length441
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503891 vs. ExPASy Swiss-Prot
Match: DBR1_CAEEL (Lariat debranching enzyme OS=Caenorhabditis elegans GN=dbr-1 PE=2 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 2.198e-43
Identity = 74/131 (56.49%), Postives = 102/131 (77.86%), Query Frame = 3
Query:   48 EKR*GLPVEGCMHGELDNVYKTLQYMENINNYKIDLLLCCGDFQAVRNENDMESLNVPRKYREMKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIYN 440
            EK+  + V GC HGE+D +Y+T+  +E  N YK DLL+CCGD+QAVRN  D+  +++P KYR +++F+KYYSG++ AP+ T+FIGGNHEAS YL EL  GGW APNIY++GFA  ++F N+RI GLSGI++
Sbjct:   38 EKKIRIAVVGCSHGEMDAIYETMTLIEQKNGYKFDLLICCGDYQAVRNYGDLPHMSIPPKYRSLQTFYKYYSGEQKAPVLTLFIGGNHEASGYLCELPNGGWVAPNIYYMGFANCIRFANLRIAGLSGIFS 168          
BLAST of CF503891 vs. ExPASy Swiss-Prot
Match: DBR1_HUMAN (Lariat debranching enzyme OS=Homo sapiens GN=DBR1 PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 2.871e-43
Identity = 78/123 (63.41%), Postives = 97/123 (78.86%), Query Frame = 3
Query:   69 VEGCMHGELDNVYKTLQYMENINNYKIDLLLCCGDFQAVRNENDMESLNVPRKYREMKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIY 437
            V GC HGELD +Y+TL   E      +DLLLCCGDFQAVRNE D+  + VP KYR M++F++YYSG++ AP+ T+FIGGNHEASN+L EL YGGW APNIY+LG AGVVK+  +RIGG+SGI+
Sbjct:    5 VAGCCHGELDKIYETLALAERRGPGPVDLLLCCGDFQAVRNEADLRCMAVPPKYRHMQTFYRYYSGEKKAPVLTLFIGGNHEASNHLQELPYGGWVAPNIYYLGLAGVVKYRGVRIGGISGIF 127          
BLAST of CF503891 vs. ExPASy Swiss-Prot
Match: DBR1_CAEBR (Lariat debranching enzyme OS=Caenorhabditis briggsae GN=dbr-1 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.575e-41
Identity = 71/131 (54.20%), Postives = 100/131 (76.34%), Query Frame = 3
Query:   48 EKR*GLPVEGCMHGELDNVYKTLQYMENINNYKIDLLLCCGDFQAVRNENDMESLNVPRKYREMKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIYN 440
            EK+  + V GC HGE+D +Y+T+  +E    YK DLL+CCGD+QAVRN  D+  +++P KYR +++F+KYYSG++ AP+ T+FIGGNHEAS +L EL  GGW APNI+++GFA  ++F  +RI GLSGIY+
Sbjct:   42 EKKAKIAVVGCSHGEMDAIYETMALIEEKKGYKFDLLICCGDYQAVRNHGDLPHMSIPPKYRSLQTFYKYYSGEKKAPVLTLFIGGNHEASGFLCELPNGGWVAPNIFYMGFANCIQFAGLRIAGLSGIYS 172          
BLAST of CF503891 vs. ExPASy Swiss-Prot
Match: DBR1_SCHPO (Lariat debranching enzyme OS=Schizosaccharomyces pombe GN=dbr1 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 6.001e-33
Identity = 64/124 (51.61%), Postives = 88/124 (70.97%), Query Frame = 3
Query:   69 VEGCMHGELDNVYKTLQYMENINNYKIDLLLCCGDFQAVRNENDMESLNVPRKYREMKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIYN 440
            V+GC HG LDN+Y   +        K+DLL+  GDFQA+RN +D   +++P K++ +  F+ YY+G+  API TIF+GGNHEASNYL EL YGGW APNIY++G + V+  G +RI G+SGIY+
Sbjct:   20 VQGCCHGILDNLYILAE------KRKVDLLIIGGDFQALRNVSDYHGISMPPKFKRLGDFFNYYNGRNKAPILTIFVGGNHEASNYLDELPYGGWVAPNIYYMGRSSVINVGGLRIAGISGIYS 137          
BLAST of CF503891 vs. ExPASy Swiss-Prot
Match: DBR1_YEAST (Lariat debranching enzyme OS=Saccharomyces cerevisiae GN=DBR1 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.209e-27
Identity = 55/125 (44.00%), Postives = 85/125 (68.00%), Query Frame = 3
Query:   63 LPVEGCMHGELDNVYKTLQYMENINNYKIDLLLCCGDFQAVRNENDMESLNVPRKYREMKSFWKYYSGQEVAPIPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGFAGVVKFGNIRIGGLSGIY 437
            + V+GC HG+L+ +YK +  +       IDLL+  GDFQ++R+  D +S+ +P KY+ +  F  YY+ +  AP+PTIFIGGNHE+  +L  L +GG+ A NI+++G++ V+ F  IRIG LSGI+
Sbjct:    6 IAVQGCCHGQLNQIYKEVSRIHA--KTPIDLLIILGDFQSIRDGQDFKSIAIPPKYQRLGDFISYYNNEIEAPVPTIFIGGNHESMRHLMLLPHGGYVAKNIFYMGYSNVIWFKGIRIGSLSGIW 128          
The following BLAST results are available for this feature:
BLAST of CF503891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
DBR1_CAEEL2.198e-4356.49Lariat debranching enzyme OS=Caenorhabditis elegan... [more]
DBR1_HUMAN2.871e-4363.41Lariat debranching enzyme OS=Homo sapiens GN=DBR1 ... [more]
DBR1_CAEBR1.575e-4154.20Lariat debranching enzyme OS=Caenorhabditis briggs... [more]
DBR1_SCHPO6.001e-3351.61Lariat debranching enzyme OS=Schizosaccharomyces p... [more]
DBR1_YEAST2.209e-2744.00Lariat debranching enzyme OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-378 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503891 ID=CF503891; Name=CF503891; organism=Citrus sinensis; type=EST; length=441bp
CAGGAAGAGGTTTTGCTTAAACCCTCAAATCAGCCCAAATAGATAAAGAA
AAAAGATGAGGATTGCCGGTGGAAGGATGCATGCATGGAGAACTAGACAA
CGTGTACAAAACGCTCCAATACATGGAGAATATCAACAATTACAAAATCG
ATCTCCTTCTCTGCTGCGGCGACTTTCAGGCTGTGAGAAATGAGAATGAC
ATGGAGAGCTTAAATGTGCCACGAAAATACCGCGAAATGAAGTCGTTTTG
GAAGTACTATTCCGGCCAAGAAGTTGCTCCGATTCCGACTATCTTCATCG
GCGGGAATCACGAAGCTTCTAATTATTTGTGGGAATTGTATTATGGGGGT
TGGGCAGCACCGAACATATACTTTCTAGGTTTTGCTGGAGTGGTGAAGTT
TGGCAATATTCGTATCGGCGGACTTTCTGGGATTTATAATG
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