CF503905

Overview
NameCF503905
Unique NameCF503905
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503905 vs. ExPASy Swiss-Prot
Match: UGDH_PONAB (UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGDH PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.005e-48
Identity = 97/158 (61.39%), Postives = 115/158 (72.78%), Query Frame = 2
Query:   65 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSK-GIKFQSFQTPSFL 535
            KICCIGAGYVGGPT +VIA   P I V VVD++ SRINAWNS  LPIYEPGL  VV+ CRGKNLFFST+++  + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I   S   KIV EKSTVPV+ AE+I +I   N+K  +  Q    P FL
Sbjct:    6 KICCIGAGYVGGPTCSVIAHMRPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFL 163          
BLAST of CF503905 vs. ExPASy Swiss-Prot
Match: TUAD_BACSU (UDP-glucose 6-dehydrogenase tuaD OS=Bacillus subtilis GN=tuaD PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.157e-21
Identity = 62/164 (37.80%), Postives = 85/164 (51.83%), Query Frame = 2
Query:   59 MVKICCIGAGYVG---GPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGL-DGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKG-IKFQSFQTPSFL 535
            M KI  IG GYVG   G   A I  K     V   DI  S+I +  +  +PIYEPGL D V K    + L F+ D+   +  +DI++++V TP    G      ADLTY ++AA+ I +     K++V KSTVPV T + ++ I+   SKG   F     P FL
Sbjct:    1 MKKIAVIGTGYVGLVSGTCFAEIGNK-----VVCCDIDESKIRSLKNGVIPIYEPGLADLVEKNVLDQRLTFTNDIPSAIRASDIIYIAVGTPMSKTG-----EADLTYVKAAAKTIGEHLNGYKVIVNKSTVPVGTGKLVQSIVQKASKGRYSFDVVSNPEFL 154          

HSP 2 Score: 30.0314 bits (66), Expect = 2.157e-21
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 1
Query:  511 ILSNPEFLAEGTAIQDLFN 567
            ++SNPEFL EG+AI D  N
Sbjct:  147 VVSNPEFLREGSAIHDTMN 165          
BLAST of CF503905 vs. ExPASy Swiss-Prot
Match: UDG_RHIME (UDP-glucose 6-dehydrogenase OS=Rhizobium meliloti GN=rkpK PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.186e-16
Identity = 58/159 (36.48%), Postives = 87/159 (54.72%), Query Frame = 2
Query:   62 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVV-KQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQSFQTPSFL 535
            +KI  IGAGYVG   ++ +       +V  VD    +I+A    Q+PI+EPGLD +V        L F+ D++  V+ +D+VF++V TP++    G G A DL+Y  +AAR IA   +   +VV KSTVPV T + +E+I+   +          P FL
Sbjct:    1 MKITMIGAGYVG--LVSGVCFADFGHDVVCVDKDEGKISALKKGQIPIFEPGLDHLVASNVASGRLNFTDDLKTAVAASDVVFIAVGTPSRR---GDGHA-DLSYVYAAAREIAANLQGFTVVVTKSTVPVGTGDEVERIIRETNPAADVTVVSNPEFL 153          
BLAST of CF503905 vs. ExPASy Swiss-Prot
Match: YWQF_BACSU (UDP-glucose 6-dehydrogenase ywqF OS=Bacillus subtilis GN=ywqF PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 56/160 (35.00%), Postives = 83/160 (51.88%), Query Frame = 2
Query:   62 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVV-KQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILT-HNSKGIKFQSFQTPSFL 535
            + I  IG GYVG   +  ++L      V  +DI   +I+       PI+EPGL+ ++ K      L F T  EK +++ADI+F++V TP K+ G      A+L     AA+ IA   K D +VV KSTVPV T + I  ++T H ++ +       P FL
Sbjct:    1 MNITVIGTGYVG--LVTGVSLSEIGHHVTCIDIDAHKIDEMRKGISPIFEPGLEELMRKNTADGRLNFETSYEKGLAQADIIFIAVGTPQKSDG-----HANLEQITDAAKRIAKHVKRDTVVVTKSTVPVGTNDLINGLITEHLAEPVSISVASNPEFL 153          
BLAST of CF503905 vs. ExPASy Swiss-Prot
Match: Y1054_METJA (Uncharacterized protein MJ1054 OS=Methanocaldococcus jannaschii GN=MJ1054 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.110e-14
Identity = 55/160 (34.38%), Postives = 84/160 (52.50%), Query Frame = 2
Query:   62 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIAD-VSKSD-KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQSFQTPSFL 535
            + I  IG GYVG   +  + L     +V  +DI  S++ A N  + P+YE GL+G++K+   KNL F+T   K + ++D++F+ V TP    G      ADL +  SA   I + + K D K++V KSTVPV T   ++++L    K         P FL
Sbjct:    1 MNISVIGTGYVG--LIQAVGLAEFGFDVVGIDIDESKVKALNRGECPLYEEGLEGLLKKHVNKNLTFTTSY-KPIKDSDVIFLCVGTPQDKDG-----NADLRFLFSAVEKIKETIDKEDYKVIVIKSTVPVGTNRRVKELL----KDYNVDVVSNPEFL 148          
BLAST of CF503905 vs. ExPASy Swiss-Prot
Match: UDG_PSEAE (UDP-glucose 6-dehydrogenase OS=Pseudomonas aeruginosa GN=udg PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.110e-14
Identity = 54/163 (33.13%), Postives = 85/163 (52.15%), Query Frame = 2
Query:   62 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVK-QCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKI----LTHNSKGIKFQSFQTPSFL 535
            +++C IGAGYVG  T A  A      +V  V+    R+      ++PIYEPGL+ +++ Q     L F+  + + +++A++VF++V TP    G     +ADL++  + A  +    +   IVV KSTVPV TAE +E+I    L    K  +      P FL
Sbjct:    1 MRLCVIGAGYVGLVTAACFAEM--GNQVRCVERDRERVARLRRGEMPIYEPGLESILRDQLDAARLTFTASLAEGLADAEVVFIAVGTPCGEDG-----SADLSHVLAVAEQLGAQLRQACIVVNKSTVPVGTAERVEEIIRLGLARRRKRFRVAVASNPEFL 156          
BLAST of CF503905 vs. ExPASy Swiss-Prot
Match: YTCA_BACSU (Putative UDP-glucose 6-dehydrogenase ytcA OS=Bacillus subtilis GN=ytcA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.894e-14
Identity = 54/160 (33.75%), Postives = 82/160 (51.25%), Query Frame = 2
Query:   62 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEK--ILTHNSKGIKFQSFQTPSFL 535
            +KIC +GAGYVG    A  AL     ++   D  V +I       +P YEPGL   + +C   NL FS++V+  + E  ++F++V TP ++ G     +AD    +S    +++  +S K ++ KSTVP  T E I K  I +  SK + F     P FL
Sbjct:    1 MKICVVGAGYVGLTLSA--ALASIGHDMICTDKDVKKIGQLKKGVIPFYEPGLSDAILRCG--NLSFSSEVKSSMEECPVIFIAVGTPPRSDG-----SADTKALQSVIGDLSEAIRSYKTIITKSTVPPGTNENIAKQLIASGVSKNL-FNIVSNPEFL 150          
BLAST of CF503905 vs. ExPASy Swiss-Prot
Match: WECC_METM7 (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=wecC PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.571e-13
Identity = 56/162 (34.57%), Postives = 79/162 (48.77%), Query Frame = 2
Query:   65 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQSFQTPSFLLREL 547
            KIC IG GY+G PT +++A      EV  VD++  R+N   + +L I EPGL  +VK     KNL   T  E    EAD   + V TP      G+ K  DLTY  SA + I    K   ++V +ST+P +T + I + +              P  +L+EL
Sbjct:   11 KICVIGLGYIGLPTASMLANH--GYEVVGVDVNEKRVNHIKNGELKIEEPGLLTLVKGAINSKNLNVQTSAE----EADAFIICVPTPALENEDGS-KKCDLTYVMSAVQAIIPFLKDGNLIVVESTIPPETTKKIYETINKKIYVAHCPERVLPGKILKEL 165          
BLAST of CF503905 vs. ExPASy Swiss-Prot
Match: WECC_METMP (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus maripaludis GN=wecC PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.772e-12
Identity = 54/162 (33.33%), Postives = 80/162 (49.38%), Query Frame = 2
Query:   65 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQSFQTPSFLLREL 547
            KIC IG GY+G PT +++A      +V  VD++  R+N   + +L I EPGL  +VK     KNL    +V    +EAD   + V TP   +  G+ K  DL+Y  SA   I    K   ++V +ST+P +T + I + L              P  +L+EL
Sbjct:   11 KICVIGLGYIGLPTASMLANH--GYDVVGVDVNEKRVNQIKNGELKIEEPGLLTLVKGAINSKNL----NVRTSATEADAFIICVPTPALAKEDGS-KKCDLSYVMSAVEAILPFVKDGNLIVIESTIPPETTKKIYETLNKKIYVAHCPERVLPGKILKEL 165          
BLAST of CF503905 vs. ExPASy Swiss-Prot
Match: WECC_METM5 (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=wecC PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.500e-11
Identity = 53/162 (32.72%), Postives = 79/162 (48.77%), Query Frame = 2
Query:   65 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVK-QCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQSFQTPSFLLREL 547
            KIC IG GY+G PT +++A      EV  VD++  R+N   + +L I EPGL  +VK     KNL    +V+   +EAD   + V TP      G+ K  DLTY   A + I    K   ++V +ST+P +  + I + +              P  +L+EL
Sbjct:   11 KICVIGLGYIGLPTASMLANH--GYEVVGVDVNEKRVNQIKNGELKIEEPGLLTLVKGAINSKNL----NVQTSATEADAFIICVPTPALENEDGS-KKCDLTYVMGAVQNIIPFLKEGNLIVIESTIPPEITKKIYETIDKKIYVAHCPERVLPGKILKEL 165          
The following BLAST results are available for this feature:
BLAST of CF503905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
UGDH_PONAB2.005e-4861.39UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGD... [more]
TUAD_BACSU2.157e-2137.80UDP-glucose 6-dehydrogenase tuaD OS=Bacillus subti... [more]
UDG_RHIME1.186e-1636.48UDP-glucose 6-dehydrogenase OS=Rhizobium meliloti ... [more]
YWQF_BACSU3.816e-1535.00UDP-glucose 6-dehydrogenase ywqF OS=Bacillus subti... [more]
Y1054_METJA1.110e-1434.38Uncharacterized protein MJ1054 OS=Methanocaldococc... [more]
UDG_PSEAE1.110e-1433.13UDP-glucose 6-dehydrogenase OS=Pseudomonas aerugin... [more]
YTCA_BACSU1.894e-1433.75Putative UDP-glucose 6-dehydrogenase ytcA OS=Bacil... [more]
WECC_METM73.571e-1334.57UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methan... [more]
WECC_METMP1.772e-1233.33UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methan... [more]
WECC_METM51.500e-1132.72UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methan... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-392 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503905 ID=CF503905; Name=CF503905; organism=Citrus sinensis; type=EST; length=571bp
GTTGTTTTGATTTTGAGAAATCGAAGCTCACTGAGGTTATATTGATTAGT
AAAGGAAAATGGTGAAGATCTGCTGCATCGGTGCTGGGTATGTTGGGGGG
CCGACAATGGCAGTCATTGCACTGAAGTGCCCATCCATTGAAGTGGCTGT
TGTTGATATCTCTGTGTCTCGGATCAATGCCTGGAACAGTGACCAGCTCC
CCATCTATGAGCCTGGACTTGATGGTGTGGTAAAGCAGTGCCGAGGGAAG
AACCTGTTCTTCAGCACCGATGTTGAGAAGCATGTCTCTGAGGCTGATAT
TGTCTTTGTTTCGGTCAATACCCCAACTAAAACTCAGGGTCTTGGTGCTG
GCAAAGCTGCAGATCTGACATACTGGGAGAGCGCTGCTCGTGTGATTGCC
GATGTGTCAAAGTCTGACAAAATTGTTGTTGAGAAATCAACAGTTCCTGT
AAAAACTGCTGAGGCAATTGAAAAAATTTTGACCCACAACAGCAAGGGAA
TCAAATTCCAATCCTTTCAAACCCCGAGTTTCTTGCTGAGGGAACTGCAA
TACAGGATCTTTTTAACCCAG
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