CF503913
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_METM6 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl18p PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.742e-14 Identity = 56/183 (30.60%), Postives = 87/183 (47.54%), Query Frame = 2 Query: 92 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSRMASSWMLRFTASI 640 +F+V ++RRREGKTD+R R+ L+ K R V R + ++IAQ+++ + GD VL +A++ EL + G + N AAY TGLLL ++ +K EG E A+LD GL + T G +F IPH D+ A R+ + + + S+ Sbjct: 6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIADEERLNGTHVKNYAESL 155
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL5_RABIT (60S ribosomal protein L5 (Fragments) OS=Oryctolagus cuniculus GN=RPL5 PE=1 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 1.150e-13 Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 2 Query: 56 FVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKY 196 FVK K+KAYFKR+QVK++RRREGKTDY AR RL+ QDKNKYNTP + Sbjct: 2 FVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPAH 48
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_PYRAR (50S ribosomal protein L18P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl18p PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.962e-13 Identity = 56/183 (30.60%), Postives = 81/183 (44.26%), Query Frame = 2 Query: 92 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSRMASSWMLRFTASI 640 R++V ++RRREG T+YR R +L+ K R VVR TNK IIAQIV A +GD +A A L ++G N +AAY GL++ Y+ + E A+LD+GL + T G RVF IPH ++ R+ + + A + Sbjct: 6 RYKVPFRRRREGLTNYRKRRKLVISKKP-------RLVVRKTNKHIIAQIVVAKPIGDETVAGADTRILTKFGWRGDENNTSAAYLLGLVVG------------YKARMRGVEE--------------AILDIGLHRPTPGARVFAVLKGALDAGLKIPHGEEVLPSDERIRGEHIAEYAAKL 155
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_METPE (50S ribosomal protein L18P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl18p PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.962e-13 Identity = 56/163 (34.36%), Postives = 79/163 (48.47%), Query Frame = 2 Query: 92 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDK 580 R+ V ++RRREGKTDY R +LI ++ R VVR TN+ II Q++ A + GD L A + EL YG + +N AAY TG+L A V+A D+ PA A+LD+GL + T G +VF +PH ++ Sbjct: 6 RYFVPFRRRREGKTDYYKRGKLIVAEQP-------RMVVRKTNRHIIVQMIVAEMEGDKTLVTANSAELLDYGYKGSTSNTPAAYLTGMLFA----------------VKALNADH---PA-------AILDIGLNRATYGAKVFAALKGAVEAGLDVPHGEE 135
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_METM5 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl18p PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.562e-13 Identity = 56/183 (30.60%), Postives = 85/183 (46.45%), Query Frame = 2 Query: 92 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSRMASSWMLRFTASI 640 +F+V ++RRREGKTD+R R+ L+ K R V R + ++ AQ++S + GD VL +A+ EL + G + N AAY TGLLL ++ +K EG E A+LD GL + T G +F IPH D+ A R+ + + + S+ Sbjct: 6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVTAQLMSYDEKGDVVLVSAHTKELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIAEEERLNGTHVKNYAESL 155
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_UNCMA (50S ribosomal protein L18P OS=Uncultured methanogenic archaeon RC-I GN=rpl18p PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.370e-13 Identity = 60/183 (32.79%), Postives = 86/183 (46.99%), Query Frame = 2 Query: 92 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSRMASSWMLRFTAS 637 R++V ++RRREGKTDY R++LI + K R VVR T+ +IAQI+ GD VLAAA + EL + +G + N +AAY TGLL+ + E VE A+LD+GL + G+RV+ +P S+ F R+ + TAS Sbjct: 6 RYKVAFRRRREGKTDYHQRLKLI-------VSRKPRLVVRRTSSQVIAQILVTRPEGDKVLAAATSAELAKTFGYKGSGKNTSAAYLTGLLIGYKA---------QEAGVE-----------------EAILDMGLRENRAGSRVYAALKGAVDSGLEVPCSEDVFPSDDRIRGEHIAGNTAS 155
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_METMP (50S ribosomal protein L18P OS=Methanococcus maripaludis GN=rpl18p PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.707e-13 Identity = 55/183 (30.05%), Postives = 84/183 (45.90%), Query Frame = 2 Query: 92 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSRMASSWMLRFTASI 640 +F+V ++RRREGKTD+R R+ L+ K R V R + ++ AQ+++ + GD VL +A++ EL + G + N AAY TGLLL + +K ED A+LD GL + T G +F IPH DK A R+ + + + S+ Sbjct: 6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVTAQLMAYDEKGDVVLVSAHSKELVKMGYKGHCGNLPAAYLTGLLLGAKAVK----------------EDVK----------EAVLDKGLHRATKGAAIFAVLKGALDAGMDIPHGDKIIADEERLNGTHVKNYAESL 155
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_AERPE (50S ribosomal protein L18P OS=Aeropyrum pernix GN=rpl18p PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.707e-13 Identity = 56/172 (32.56%), Postives = 78/172 (45.35%), Query Frame = 2 Query: 92 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSRM 604 R++V +RRREGKT+Y R RL+ K R VR +N+ + Q + A I GD V+AAA++ EL ++G + N AAY TG L R L+ + A+LDVGL K G+RVF IPHS++ G R+ Sbjct: 6 RYRVPLRRRREGKTNYYRRFRLVKSGKP-------RMAVRISNEYLWVQFLEARIEGDRVIAAAHSRELIKKFGWKGDGNNTCAAYLTGYLAGLRALE--------------------------KGVREAVLDVGLHKPVKGSRVFAALKGALDAGVEIPHSEEILPGDERV 144
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_METTP (50S ribosomal protein L18P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl18p PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.454e-13 Identity = 53/180 (29.44%), Postives = 80/180 (44.44%), Query Frame = 2 Query: 92 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSRMASSWMLRFT 631 R++V ++RRREG+T+Y R RLI K R VVR N +I Q++ A + GD L + EL YG + N AAY TGLL +++L + Y+ +LD+GL + G+RV+ +PHS + F SR+ + +T Sbjct: 6 RYRVPFRRRREGRTNYHVRYRLILSRKP-------RVVVRKGNANITIQLIIAELKGDRTLLTVSSKELRNYGFQHSTGNVPAAYLTGLLFGKKMLAL----------------GYN----------EGILDIGLHSNSRGSRVYAALKGVVDAGVDVPHSPEVFPDDSRIRGEVIRDYT 152
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_PYRAE (50S ribosomal protein L18P OS=Pyrobaculum aerophilum GN=rpl18p PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 8.098e-13 Identity = 54/163 (33.13%), Postives = 72/163 (44.17%), Query Frame = 2 Query: 92 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDK 580 R++V ++RRREG T+YR R +L+ K R VVR TNK IIAQIV A GD + A L ++G N AAAY GL++ + A RR A+LD+GL + G RVF IPH ++ Sbjct: 6 RYKVPFRRRREGLTNYRKRRKLLLSKKP-------RLVVRKTNKHIIAQIVVAKPQGDVTIVGADTRILAKFGWRGDENNVAAAYLLGLVVGYK--------------------------ARARRVEEAILDIGLHRPAPGARVFAVLKGALDAGLKIPHGEE 135 HSP 2 Score: 21.557 bits (44), Expect = 8.098e-13 Identity = 9/15 (60.00%), Postives = 9/15 (60.00%), Query Frame = 3 Query: 687 EPEKYQSHFTEYIKK 731 EPEK HF E KK Sbjct: 176 EPEKLPEHFEEVKKK 190 The following BLAST results are available for this feature:
BLAST of CF503913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
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Sequences
The
following sequences are available for this feature:
EST sequence >CF503913 ID=CF503913; Name=CF503913; organism=Citrus sinensis; type=EST; length=735bpback to top |