CF503913

Overview
NameCF503913
Unique NameCF503913
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_METM6 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.742e-14
Identity = 56/183 (30.60%), Postives = 87/183 (47.54%), Query Frame = 2
Query:   92 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSRMASSWMLRFTASI 640
            +F+V ++RRREGKTD+R R+ L+   K        R V R +  ++IAQ+++ +  GD VL +A++ EL + G +    N  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F            IPH D+  A   R+  + +  +  S+
Sbjct:    6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVIAQLMAYDEKGDVVLVSAHSRELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIADEERLNGTHVKNYAESL 155          
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL5_RABIT (60S ribosomal protein L5 (Fragments) OS=Oryctolagus cuniculus GN=RPL5 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.150e-13
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 2
Query:   56 FVKAQKSKAYFKRFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKY 196
            FVK  K+KAYFKR+QVK++RRREGKTDY AR RL+ QDKNKYNTP +
Sbjct:    2 FVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPAH 48          
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_PYRAR (50S ribosomal protein L18P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.962e-13
Identity = 56/183 (30.60%), Postives = 81/183 (44.26%), Query Frame = 2
Query:   92 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSRMASSWMLRFTASI 640
            R++V ++RRREG T+YR R +L+   K        R VVR TNK IIAQIV A  +GD  +A A    L ++G      N +AAY  GL++             Y+  +    E              A+LD+GL + T G RVF            IPH ++      R+    +  + A +
Sbjct:    6 RYKVPFRRRREGLTNYRKRRKLVISKKP-------RLVVRKTNKHIIAQIVVAKPIGDETVAGADTRILTKFGWRGDENNTSAAYLLGLVVG------------YKARMRGVEE--------------AILDIGLHRPTPGARVFAVLKGALDAGLKIPHGEEVLPSDERIRGEHIAEYAAKL 155          
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_METPE (50S ribosomal protein L18P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.962e-13
Identity = 56/163 (34.36%), Postives = 79/163 (48.47%), Query Frame = 2
Query:   92 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDK 580
            R+ V ++RRREGKTDY  R +LI  ++        R VVR TN+ II Q++ A + GD  L  A + EL  YG +   +N  AAY TG+L A                V+A   D+   PA       A+LD+GL + T G +VF            +PH ++
Sbjct:    6 RYFVPFRRRREGKTDYYKRGKLIVAEQP-------RMVVRKTNRHIIVQMIVAEMEGDKTLVTANSAELLDYGYKGSTSNTPAAYLTGMLFA----------------VKALNADH---PA-------AILDIGLNRATYGAKVFAALKGAVEAGLDVPHGEE 135          
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_METM5 (50S ribosomal protein L18P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.562e-13
Identity = 56/183 (30.60%), Postives = 85/183 (46.45%), Query Frame = 2
Query:   92 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSRMASSWMLRFTASI 640
            +F+V ++RRREGKTD+R R+ L+   K        R V R +  ++ AQ++S +  GD VL +A+  EL + G +    N  AAY TGLLL ++ +K        EG  E                  A+LD GL + T G  +F            IPH D+  A   R+  + +  +  S+
Sbjct:    6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVTAQLMSYDEKGDVVLVSAHTKELVKMGYKGHCGNLPAAYLTGLLLGKKAVK--------EGAEE------------------AILDKGLHRATKGAAIFAVLKGALDAGMDIPHGDEIIAEEERLNGTHVKNYAESL 155          
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_UNCMA (50S ribosomal protein L18P OS=Uncultured methanogenic archaeon RC-I GN=rpl18p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.370e-13
Identity = 60/183 (32.79%), Postives = 86/183 (46.99%), Query Frame = 2
Query:   92 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPR-YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSRMASSWMLRFTAS 637
            R++V ++RRREGKTDY  R++LI        + K R VVR T+  +IAQI+     GD VLAAA + EL + +G +    N +AAY TGLL+  +           E  VE                  A+LD+GL +   G+RV+            +P S+  F    R+    +   TAS
Sbjct:    6 RYKVAFRRRREGKTDYHQRLKLI-------VSRKPRLVVRRTSSQVIAQILVTRPEGDKVLAAATSAELAKTFGYKGSGKNTSAAYLTGLLIGYKA---------QEAGVE-----------------EAILDMGLRENRAGSRVYAALKGAVDSGLEVPCSEDVFPSDDRIRGEHIAGNTAS 155          
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_METMP (50S ribosomal protein L18P OS=Methanococcus maripaludis GN=rpl18p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.707e-13
Identity = 55/183 (30.05%), Postives = 84/183 (45.90%), Query Frame = 2
Query:   92 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSRMASSWMLRFTASI 640
            +F+V ++RRREGKTD+R R+ L+   K        R V R +  ++ AQ+++ +  GD VL +A++ EL + G +    N  AAY TGLLL  + +K                ED             A+LD GL + T G  +F            IPH DK  A   R+  + +  +  S+
Sbjct:    6 KFRVPFRRRREGKTDFRQRLGLLLSGKP-------RLVARKSLNNVTAQLMAYDEKGDVVLVSAHSKELVKMGYKGHCGNLPAAYLTGLLLGAKAVK----------------EDVK----------EAVLDKGLHRATKGAAIFAVLKGALDAGMDIPHGDKIIADEERLNGTHVKNYAESL 155          
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_AERPE (50S ribosomal protein L18P OS=Aeropyrum pernix GN=rpl18p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.707e-13
Identity = 56/172 (32.56%), Postives = 78/172 (45.35%), Query Frame = 2
Query:   92 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHEL-PRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSRM 604
            R++V  +RRREGKT+Y  R RL+   K        R  VR +N+ +  Q + A I GD V+AAA++ EL  ++G +    N  AAY TG L   R L+                          +    A+LDVGL K   G+RVF            IPHS++   G  R+
Sbjct:    6 RYRVPLRRRREGKTNYYRRFRLVKSGKP-------RMAVRISNEYLWVQFLEARIEGDRVIAAAHSRELIKKFGWKGDGNNTCAAYLTGYLAGLRALE--------------------------KGVREAVLDVGLHKPVKGSRVFAALKGALDAGVEIPHSEEILPGDERV 144          
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_METTP (50S ribosomal protein L18P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.454e-13
Identity = 53/180 (29.44%), Postives = 80/180 (44.44%), Query Frame = 2
Query:   92 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSRMASSWMLRFT 631
            R++V ++RRREG+T+Y  R RLI   K        R VVR  N +I  Q++ A + GD  L    + EL  YG +    N  AAY TGLL  +++L +                 Y+            +LD+GL   + G+RV+            +PHS + F   SR+    +  +T
Sbjct:    6 RYRVPFRRRREGRTNYHVRYRLILSRKP-------RVVVRKGNANITIQLIIAELKGDRTLLTVSSKELRNYGFQHSTGNVPAAYLTGLLFGKKMLAL----------------GYN----------EGILDIGLHSNSRGSRVYAALKGVVDAGVDVPHSPEVFPDDSRIRGEVIRDYT 152          
BLAST of CF503913 vs. ExPASy Swiss-Prot
Match: RL18_PYRAE (50S ribosomal protein L18P OS=Pyrobaculum aerophilum GN=rpl18p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.098e-13
Identity = 54/163 (33.13%), Postives = 72/163 (44.17%), Query Frame = 2
Query:   92 RFQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSANIVGDSVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDK 580
            R++V ++RRREG T+YR R +L+   K        R VVR TNK IIAQIV A   GD  +  A    L ++G      N AAAY  GL++  +                          A  RR   A+LD+GL +   G RVF            IPH ++
Sbjct:    6 RYKVPFRRRREGLTNYRKRRKLLLSKKP-------RLVVRKTNKHIIAQIVVAKPQGDVTIVGADTRILAKFGWRGDENNVAAAYLLGLVVGYK--------------------------ARARRVEEAILDIGLHRPAPGARVFAVLKGALDAGLKIPHGEE 135          

HSP 2 Score: 21.557 bits (44), Expect = 8.098e-13
Identity = 9/15 (60.00%), Postives = 9/15 (60.00%), Query Frame = 3
Query:  687 EPEKYQSHFTEYIKK 731
            EPEK   HF E  KK
Sbjct:  176 EPEKLPEHFEEVKKK 190          
The following BLAST results are available for this feature:
BLAST of CF503913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RL18_METM66.742e-1430.6050S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL5_RABIT1.150e-1374.4760S ribosomal protein L5 (Fragments) OS=Oryctolagu... [more]
RL18_PYRAR1.962e-1330.6050S ribosomal protein L18P OS=Pyrobaculum arsenati... [more]
RL18_METPE1.962e-1334.3650S ribosomal protein L18P OS=Methanosphaerula pal... [more]
RL18_METM52.562e-1330.6050S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_UNCMA4.370e-1332.7950S ribosomal protein L18P OS=Uncultured methanoge... [more]
RL18_METMP5.707e-1330.0550S ribosomal protein L18P OS=Methanococcus maripa... [more]
RL18_AERPE5.707e-1332.5650S ribosomal protein L18P OS=Aeropyrum pernix GN=... [more]
RL18_METTP7.454e-1329.4450S ribosomal protein L18P OS=Methanosaeta thermop... [more]
RL18_PYRAE8.098e-1333.1350S ribosomal protein L18P OS=Pyrobaculum aerophil... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-401 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503913 ID=CF503913; Name=CF503913; organism=Citrus sinensis; type=EST; length=735bp
GCCGTCTCTCCTTCCCTCTCCTTTCTCTTACAACTCGAAAGTTCGAGCAA
TGGCCTTTGTCAAGGCTCAGAAATCCAAGGCTTACTTCAAGCGGTTCCAG
GTTAAGTACAAGAGAAGAAGAGAGGGAAAGACTGATTACAGAGCTAGAAT
TCGCTTGATTAATCAGGACAAGAATAAGTACAACACACCCAAATACCGAT
TTGTTGTCCGATTCACAAACAAGGACATCATTGCACAGATAGTGTCAGCC
AACATTGTTGGTGATTCTGTCCTTGCTGCTGCTTATGCCCATGAGCTTCC
TCGTTATGGACTTGAAGTAGGTCTTACAAACTATGCTGCAGCTTATTGCA
CTGGGCTTCTTTTGGCTCGTCGTGTCTTGAAGATGCTTGAAATGGATGAT
GAGTATGAGGGCAATGTTGAGGCTACCGGAGAGGATTACTCTGTCGAACC
AGCTGATACAAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGGCTCATCA
AAACAACAACTGGAAACCGTGTCTTTGGTGCTCTGAAGGGAGCATTAGAT
GGTGGATTGGACATTCCTCATAGTGACAAGAGGTTTGCTGGTTTTTCAAG
GATGGCAAGCAGCTGGATGCTGAGGTTCACCGCAAGTATATCTATGGTGG
ACATGTTGCTGCTACATGAGTACATTGATGGAGGATGAGCCAGAGAAGTA
TCAATCTCACTTCACCGAGTACATCAAGAAAGGAA
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