CF503921

Overview
NameCF503921
Unique NameCF503921
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length509
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503921 vs. ExPASy Swiss-Prot
Match: SPEA_CHRVO (Biosynthetic arginine decarboxylase OS=Chromobacterium violaceum GN=speA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.577e-21
Identity = 51/113 (45.13%), Postives = 70/113 (61.95%), Query Frame = 3
Query:  129 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDG 458
            Y  N S+F S+PD WAI Q+ PI+P+H L E+P  R VL DLTCDSDGK+ +++      +S+ +HE+  G       Y + +FL GAY+E LG +HNLFG    V V   +G
Sbjct:  454 YFCNFSVFQSLPDTWAIDQVLPIMPVHRLAEQPTRRAVLQDLTCDSDGKLKQYVDQQSIESSMSVHEVKQG-----DEYLIAVFLVGAYQEILGDMHNLFGDTDSVNVYVREG 561          
BLAST of CF503921 vs. ExPASy Swiss-Prot
Match: SPEA_PASMU (Biosynthetic arginine decarboxylase OS=Pasteurella multocida GN=speA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.978e-21
Identity = 63/170 (37.06%), Postives = 90/170 (52.94%), Query Frame = 3
Query:   27 QFKDGTLGIEQLATVDGLCDFVAKEIGA--SDPVRTY---------------HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGG---TSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAV 476
            Q+  G L +EQ A  + L   +  E+G   ++  R++               +VN S+F S+PD W I QLFP+ PI +L++    R VL D+TCDSDG ID +I G    T++P+         E  P  LG F+ GAY+E LG +HNLFG  S V VL  +   ++ V
Sbjct:  420 QYNVGLLNLEQRAWAEQLYLNICHEVGQLFNEKHRSHRTIIDELQERFADKLYVNFSLFQSLPDAWGIDQLFPVCPISNLNQPVSRRAVLLDITCDSDGTIDHYIDGDGITTTMPMPHY-----EEDNPPLLGFFMVGAYQEILGNMHNLFGDTSTVDVLVHEQDKAYIV 584          
BLAST of CF503921 vs. ExPASy Swiss-Prot
Match: SPEA_SHELP (Biosynthetic arginine decarboxylase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=speA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.807e-21
Identity = 51/114 (44.74%), Postives = 71/114 (62.28%), Query Frame = 3
Query:  129 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGP-SVVRVLQSDG 458
            + VN S+F S+PD W I Q+FP++P+  LD++P  R V+ D+TCDSDG +D+++ G    T+LP+            PY +G FL GAY+E LG +HNLFG   S V  L  DG
Sbjct:  464 FFVNFSLFQSLPDAWGIDQVFPVMPLSGLDKKPERRAVMLDITCDSDGTVDQYVDGQGIETTLPV-----PAWSAESPYLIGFFLVGAYQEILGDMHNLFGDTNSAVVRLDDDG 572          
BLAST of CF503921 vs. ExPASy Swiss-Prot
Match: SPEA_ALHEH (Biosynthetic arginine decarboxylase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=speA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.807e-21
Identity = 59/128 (46.09%), Postives = 77/128 (60.16%), Query Frame = 3
Query:  138 NLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFI---GGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV-LQSDGPHSFAVTRAMPGPSCGD 509
            N S+F S+PD WAI Q+FP++P+  LDE P  R VL DLTCDSDG I  ++   G  ++LPL     G      PY LG+FL GAY+E LG +HNLFG    V V L  +G   +A++ A  G +  D
Sbjct:  459 NFSLFQSMPDVWAIDQIFPVLPLQRLDEPPASRAVLQDLTCDSDGCIRGYVDRDGVESTLPLPPWRPG-----EPYLLGIFLVGAYQEILGDMHNLFGDTHSVNVRLTGEG---YALSGAAHGDTITD 578          
BLAST of CF503921 vs. ExPASy Swiss-Prot
Match: SPEA_TOLAT (Biosynthetic arginine decarboxylase OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=speA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.020e-20
Identity = 51/110 (46.36%), Postives = 68/110 (61.82%), Query Frame = 3
Query:  135 VNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSD 455
            VN S+F S+PD W I Q+FPI+P+  LD++P  RGV+ D+TCDSDG I +++ G     SLP+ EM           Y+G FL GAY+E LG +HNLFG      V  +D
Sbjct:  464 VNFSLFQSLPDAWGIDQIFPIMPLSGLDQQPTRRGVIMDITCDSDGMIKEYVDGVGIENSLPMPEMRNDETN-----YMGFFLVGAYQEILGDLHNLFGDTHSAEVCLND 568          
BLAST of CF503921 vs. ExPASy Swiss-Prot
Match: SPEA_SHEWM (Biosynthetic arginine decarboxylase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=speA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.020e-20
Identity = 53/114 (46.49%), Postives = 70/114 (61.40%), Query Frame = 3
Query:  129 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGP-SVVRVLQSDG 458
            + VN S+F S+PD W I Q+FPI+P+  LD+ P  R V+ D+TCDSDG ID+++ G    T+LP+            PY +G FL GAY+E LG +HNLFG   S V  L  DG
Sbjct:  464 FFVNFSLFQSLPDAWGIDQVFPIMPLSGLDKAPERRAVMLDITCDSDGTIDQYVDGQGIETTLPV-----PAWSAESPYLIGFFLVGAYQEILGDMHNLFGDTNSAVIRLDDDG 572          
BLAST of CF503921 vs. ExPASy Swiss-Prot
Match: SPEA_SHEHH (Biosynthetic arginine decarboxylase OS=Shewanella halifaxensis (strain HAW-EB4) GN=speA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.020e-20
Identity = 50/110 (45.45%), Postives = 71/110 (64.55%), Query Frame = 3
Query:  129 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFG--GPSVVRV 443
            + VN S+F S+PD W I Q+FP++P+  LD+ P  R V+ D+TCDSDG ID+++ G    T+LP+         +  PY +G FL GAY+E LG +HNLFG    +VVR+
Sbjct:  464 FFVNFSLFQSLPDAWGIDQVFPVMPLSGLDKAPESRAVMLDITCDSDGTIDQYVDGQGIETTLPVPAWT-----QESPYLIGFFLVGAYQEILGDMHNLFGDTNSAVVRL 568          
BLAST of CF503921 vs. ExPASy Swiss-Prot
Match: SPEA_SHIFL (Biosynthetic arginine decarboxylase OS=Shigella flexneri GN=speA PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.332e-20
Identity = 51/107 (47.66%), Postives = 66/107 (61.68%), Query Frame = 3
Query:  132 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 443
            +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E          P  LG F+ GAY+E LG +HNLFG    V V
Sbjct:  486 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPEY-----DPENPPMLGFFMVGAYQEILGNMHNLFGDTEAVDV 587          
BLAST of CF503921 vs. ExPASy Swiss-Prot
Match: SPEA_SHIF8 (Biosynthetic arginine decarboxylase OS=Shigella flexneri serotype 5b (strain 8401) GN=speA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.332e-20
Identity = 51/107 (47.66%), Postives = 66/107 (61.68%), Query Frame = 3
Query:  132 HVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 443
            +VN S+F S+PD W I QLFP++P+  LD+ P  R VL D+TCDSDG ID +I G    T++P+ E          P  LG F+ GAY+E LG +HNLFG    V V
Sbjct:  460 YVNFSLFQSMPDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPEY-----DPENPPMLGFFMVGAYQEILGNMHNLFGDTEAVDV 561          
BLAST of CF503921 vs. ExPASy Swiss-Prot
Match: SPEA_SHEPW (Biosynthetic arginine decarboxylase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=speA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.332e-20
Identity = 50/110 (45.45%), Postives = 71/110 (64.55%), Query Frame = 3
Query:  129 YHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFG--GPSVVRV 443
            + VN S+F S+PD W I Q+FP++P+  LD+ P  R V+ D+TCDSDG +D+++ G    T+LP+         +  PY +G FL GAY+E LG +HNLFG    +VVRV
Sbjct:  464 FFVNFSLFQSLPDAWGIDQVFPVMPLSGLDKAPERRAVMLDITCDSDGIVDQYVDGQGIETTLPVPAWT-----QESPYLIGFFLVGAYQEILGDMHNLFGDTNSAVVRV 568          
The following BLAST results are available for this feature:
BLAST of CF503921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 102
Match NameE-valueIdentityDescription
SPEA_CHRVO4.577e-2145.13Biosynthetic arginine decarboxylase OS=Chromobacte... [more]
SPEA_PASMU5.978e-2137.06Biosynthetic arginine decarboxylase OS=Pasteurella... [more]
SPEA_SHELP7.807e-2144.74Biosynthetic arginine decarboxylase OS=Shewanella ... [more]
SPEA_ALHEH7.807e-2146.09Biosynthetic arginine decarboxylase OS=Alkalilimni... [more]
SPEA_TOLAT1.020e-2046.36Biosynthetic arginine decarboxylase OS=Tolumonas a... [more]
SPEA_SHEWM1.020e-2046.49Biosynthetic arginine decarboxylase OS=Shewanella ... [more]
SPEA_SHEHH1.020e-2045.45Biosynthetic arginine decarboxylase OS=Shewanella ... [more]
SPEA_SHIFL1.332e-2047.66Biosynthetic arginine decarboxylase OS=Shigella fl... [more]
SPEA_SHIF81.332e-2047.66Biosynthetic arginine decarboxylase OS=Shigella fl... [more]
SPEA_SHEPW1.332e-2045.45Biosynthetic arginine decarboxylase OS=Shewanella ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-409 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503921 ID=CF503921; Name=CF503921; organism=Citrus sinensis; type=EST; length=509bp
ATCAATTGAAACAAAGATGCATTGAGCAATTTAAGGATGGGACTTTAGGT
ATTGAACAGTTAGCTACTGTTGATGGGTTGTGTGATTTTGTAGCTAAGGA
AATAGGTGCATCTGATCCTGTTCGTACTTATCATGTGAATCTATCTATTT
TCACTTCAATTCCGGATTATTGGGCCATTGGTCAGTTGTTTCCTATTGTT
CCAATTCATCATTTGGATGAGAGGCCTGGAGTGAGGGGGGTTTTATCGGA
TTTGACTTGTGATAGTGATGGTAAGATTGATAAGTTCATTGGTGGTGGTA
CGAGCTTGCCGTTACATGAAATGGTTGGTGGTGGTTGTGGTGAGCGTGGG
CCTTATTATTTGGGGATGTTCTTGGGTGGGGCTTATGAGGAGGCCCTCGG
TGGAGTCCACAACTTGTTTGGTGGTCCAAGCGTGGTACGCGTCTTGCAGA
GTGATGGTCCGCACAGCTTTGCTGTGACTCGGGCCATGCCTGGGCCGTCT
TGTGGGGAT
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