CF503956

Overview
NameCF503956
Unique NameCF503956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: CDC2H_PLAFK (Cell division control protein 2 homolog OS=Plasmodium falciparum (isolate K1 / Thailand) GN=CRK2 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.719e-26
Identity = 63/158 (39.87%), Postives = 99/158 (62.66%), Query Frame = 2
Query:    2 VNNEGVLKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWKK-SKL----PHATLFKPQQPYDSSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEYF 460
            +N EG LK+ADFGLA       R+  T  VVTLWYR P++L+G+  Y  ++D+WSVGC+FAE++ G P+  G +E +QL +IF++ G+P    W   ++L    P+ T+++P  P++S L    K L  + ++L+  +L ++P +R TA  AL   YF
Sbjct:  133 INREGELKIADFGLARAFGIPVRK-YTHEVVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEP-LPWESFL----KGLDESGIDLLSKMLKLDPNQRITAKQALEHAYF 284          
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: CDC2H_PLAF7 (Cell division control protein 2 homolog OS=Plasmodium falciparum (isolate 3D7) GN=CRK2 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.719e-26
Identity = 63/158 (39.87%), Postives = 99/158 (62.66%), Query Frame = 2
Query:    2 VNNEGVLKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWKK-SKL----PHATLFKPQQPYDSSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEYF 460
            +N EG LK+ADFGLA       R+  T  VVTLWYR P++L+G+  Y  ++D+WSVGC+FAE++ G P+  G +E +QL +IF++ G+P    W   ++L    P+ T+++P  P++S L    K L  + ++L+  +L ++P +R TA  AL   YF
Sbjct:  133 INREGELKIADFGLARAFGIPVRK-YTHEVVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEP-LPWESFL----KGLDESGIDLLSKMLKLDPNQRITAKQALEHAYF 284          
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: CKD18_RAT (Cell division protein kinase 18 OS=Rattus norvegicus GN=Cdk18 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.269e-25
Identity = 63/161 (39.13%), Postives = 90/161 (55.90%), Query Frame = 2
Query:    2 VNNEGVLKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWKKSKLPHATLFKPQQPYD------SSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEYFST 466
            +N  G LKLADFGLA   +   +   ++ VVTLWYRPP++LLG+T+Y   +D+W VGC+  E+  GKP+  G T  E+LH IF+L G+P ++ W     P  T     + Y+        L      L T  +NL+ +LL  E   R +A AAL+  YF +
Sbjct:  250 INERGELKLADFGLARAKSVPTKT-YSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGKPLFPGSTVKEELHLIFRLLGTPTEESW-----PGVTSISEFRAYNFPRYLPQPLLSHAPRLDTEGINLLTSLLLYESKSRMSAEAALSHPYFQS 404          
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: CDKD2_ARATH (Cyclin-dependent kinase D-2 OS=Arabidopsis thaliana GN=CDKD-2 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.269e-25
Identity = 70/175 (40.00%), Postives = 94/175 (53.71%), Query Frame = 2
Query:    2 VNNEGVLKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWKKS-KLPHATLFK--PQQPYDSSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEYFSTKPYACDLSSLPIYPPSK 517
            +   G+LKLADFGLA    + +R+  T +V   WYR PELL G+  YG  VD+W+ GC+FAELL+ +P L G TE++QL KIF+  G+P    W     LP    F   P  P    LR  F      A++L+  +   +P +R T   AL   YFS+ P   +   L I P SK
Sbjct:  143 IGENGLLKLADFGLARLFGSPNRR-FTHQVFATWYRAPELLFGSRQYGAGVDVWAAGCIFAELLLRRPFLPGSTEIDQLGKIFQAFGTPVPSQWSDMIYLPDYMEFSYTPAPP----LRTIFPMASDDALDLLAKMFIYDPRQRITIQQALDHRYFSSSPSPTEPGKLQI-PASK 311          
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: KP58_DROME (Serine/threonine-protein kinase PITSLRE OS=Drosophila melanogaster GN=Pitslre PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.658e-25
Identity = 68/192 (35.42%), Postives = 111/192 (57.81%), Query Frame = 2
Query:    2 VNNEGVLKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWK-KSKLPHATLFKPQQPY-----DSSLRETFKDLPT-TAVNLIETLLSVEPYKRATASAALASEYFSTKPYACDLSSLPIYPPSKEIDAKHREDARRK 556
            ++++G+LK+ DFGLA    +  ++  TS VVTLWYR PELLL +  Y   +D+WSVGC+FAE L   P+  G++E+++L++IFK  G+P +  W   ++LP       Q         S LR+ F++  +   ++L++ LL+ +P +R +A AAL   +F   P   D S  P +P   E+ A+  + +  K
Sbjct:  693 LSHKGILKVGDFGLAREYGSPIKK-YTSLVVTLWYRAPELLLCSPVYSTPIDVWSVGCIFAEFLQMLPLFPGKSEIDELNRIFKELGTPNEKIWPGYTELPAVKNMLSQNSQFTEYPVSQLRKHFQEKTSEMGLSLLQGLLTYDPKQRLSADAALKHGFFKELPLPIDPSMFPTWPAKSELGARKAQASSPK 883          
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: CDKD1_ORYSJ (Cyclin-dependent kinase D-1 OS=Oryza sativa subsp. japonica GN=CDKD-1 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.658e-25
Identity = 67/171 (39.18%), Postives = 90/171 (52.63%), Query Frame = 2
Query:    2 VNNEGVLKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWKKS-KLPHATLFKPQQPYDSSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEYFSTKPYACDLSSLPIYPP 511
            +  +G LKLADFGLA    +  R   T +V   WYR PELL G   YG +VD+W+ GC+FAELL+ +P LQG ++++QL KIF   G+P    W     LP    +  Q      LR  F      A++L+  + + +P  R TA  AL   YF + P     S LP  PP
Sbjct:  149 IGADGQLKLADFGLARIFGSPERN-FTHQVFARWYRAPELLFGTKQYGSAVDIWAAGCIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPKSSQWPDMVYLPDYVEY--QFVSAPPLRSLFPMASDDALDLLSRMFTYDPKARITAQQALEHRYFLSVPAPTKPSQLPRPPP 316          
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: CDKD1_ORYSI (Cyclin-dependent kinase D-1 OS=Oryza sativa subsp. indica GN=CDKD-1 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.658e-25
Identity = 67/171 (39.18%), Postives = 90/171 (52.63%), Query Frame = 2
Query:    2 VNNEGVLKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWKKS-KLPHATLFKPQQPYDSSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEYFSTKPYACDLSSLPIYPP 511
            +  +G LKLADFGLA    +  R   T +V   WYR PELL G   YG +VD+W+ GC+FAELL+ +P LQG ++++QL KIF   G+P    W     LP    +  Q      LR  F      A++L+  + + +P  R TA  AL   YF + P     S LP  PP
Sbjct:  149 IGADGQLKLADFGLARIFGSPERN-FTHQVFARWYRAPELLFGTKQYGSAVDIWAAGCIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPKSSQWPDMVYLPDYVEY--QFVSAPPLRSLFPMASDDALDLLSRMFTYDPKARITAQQALEHRYFLSVPAPTKPSQLPRPPP 316          
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: CDK5_HUMAN (Cell division protein kinase 5 OS=Homo sapiens GN=CDK5 PE=1 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 1.658e-25
Identity = 66/156 (42.31%), Postives = 90/156 (57.69%), Query Frame = 2
Query:    2 VNNEGVLKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELL-IGKPILQGRTEVEQLHKIFKLCGSPPDDYW-KKSKLPHATLFKPQQPYDSSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEYFS 463
            +N  G LKLADFGLA       R   ++ VVTLWYRPP++L GA  Y  S+D+WS GC+FAEL   G+P+  G    +QL +IF+L G+P ++ W   +KLP    + P  P  +SL      L  T  +L++ LL   P +R +A  AL   YFS
Sbjct:  134 INRNGELKLADFGLARAFGIPVRC-YSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPY-PMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQHPYFS 287          
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: CDK20_MOUSE (Cell division protein kinase 20 OS=Mus musculus GN=Cdk20 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.658e-25
Identity = 67/170 (39.41%), Postives = 91/170 (53.53%), Query Frame = 2
Query:    2 VNNEGVLKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWKK-SKLP--HATLFKPQQPYDSSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEYFSTKPYACDLSSLPI 502
            ++  G LK+ADFGLA   +    +  T +V T WYR PELL GA  Y   VDLW+VGC+  ELL G P+  G  ++EQL  + ++ G+P    W + ++LP  +   FK Q P    L E   D    A++L+   L   P +R  AS AL  +YF T P     S LPI
Sbjct:  135 ISASGQLKIADFGLARVFSPDGGRLYTHQVATRWYRAPELLYGARQYDQGVDLWAVGCIMGELLNGSPLFPGENDIEQLCCVLRILGTPSPRVWPEITELPDYNKISFKEQAPV--PLEEVLPDASPQALDLLGQFLLYPPRQRIAASQALLHQYFFTAPLPAHPSELPI 302          
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: CDC2_CARAU (Cell division control protein 2 homolog OS=Carassius auratus GN=cdc2 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.658e-25
Identity = 67/167 (40.12%), Postives = 96/167 (57.49%), Query Frame = 2
Query:    2 VNNEGVLKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWKK-SKLPHATLFKPQQPYDSSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEYFSTKPYACDLSSLP 499
            ++N+GV+KLADFGLA       R   T  VVTLWYR PE+LLGA+ Y   VD+WS+G +FAEL   KP+  G +E++QL +IF+  G+P ++ W     LP      P+     +L  T K+L    ++L+  +L  +P KR +A  A+   YF       D S+LP
Sbjct:  136 IDNKGVIKLADFGLARAFGVPVRV-YTHEVVTLWYRAPEVLLGASRYSTPVDVWSIGTIFAELATKKPLFHGDSEIDQLFRIFRTLGTPNNEVWPDVESLPDYKNTFPKWK-SGNLASTVKNLDKNGIDLLTKMLIYDPPKRISARQAMTHPYFDD----LDKSTLP 296          
The following BLAST results are available for this feature:
BLAST of CF503956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDC2H_PLAFK9.719e-2639.87Cell division control protein 2 homolog OS=Plasmod... [more]
CDC2H_PLAF79.719e-2639.87Cell division control protein 2 homolog OS=Plasmod... [more]
CKD18_RAT1.269e-2539.13Cell division protein kinase 18 OS=Rattus norvegic... [more]
CDKD2_ARATH1.269e-2540.00Cyclin-dependent kinase D-2 OS=Arabidopsis thalian... [more]
KP58_DROME1.658e-2535.42Serine/threonine-protein kinase PITSLRE OS=Drosoph... [more]
CDKD1_ORYSJ1.658e-2539.18Cyclin-dependent kinase D-1 OS=Oryza sativa subsp.... [more]
CDKD1_ORYSI1.658e-2539.18Cyclin-dependent kinase D-1 OS=Oryza sativa subsp.... [more]
CDK5_HUMAN1.658e-2542.31Cell division protein kinase 5 OS=Homo sapiens GN=... [more]
CDK20_MOUSE1.658e-2539.41Cell division protein kinase 20 OS=Mus musculus GN... [more]
CDC2_CARAU1.658e-2540.12Cell division control protein 2 homolog OS=Carassi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-444 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503956 ID=CF503956; Name=CF503956; organism=Citrus sinensis; type=EST; length=721bp
GGTGAACAATGAAGGAGTCCTCAAGTTGGCCGACTTTGGATTGGCAAACT
TCTCTAATACTGGACATCGACAACCCTTAACCAGTCGTGTTGTGACTTTA
TGGTATCGTCCACCCGAACTTTTGCTTGGCGCCACAGATTATGGACCGTC
TGTGGATCTTTGGAGTGTTGGCTGTGTGTTTGCAGAACTTCTCATAGGGA
AACCCATCCTTCAAGGGAGAACGGAGGTAGAACAACTACACAAAATTTTC
AAGCTTTGTGGGTCCCCACCTGATGATTACTGGAAAAAATCAAAACTTCC
TCATGCTACTCTGTTCAAACCACAACAACCTTATGACAGTAGTCTTCGAG
AAACATTCAAAGATTTGCCCACAACTGCCGTGAACCTGATAGAAACTTTA
CTTTCAGTAGAGCCATACAAGCGTGCAACTGCCTCTGCAGCCCTAGCATC
TGAGTATTTCTCAACAAAGCCTTATGCTTGCGATCTGTCAAGTTTGCCAA
TATATCCACCAAGCAAAGAGATTGATGCAAAACATCGTGAAGATGCACGC
AGGAAAAGGGTGGTGGAAGAGTTCGTGGAGCTGAGACAAGAAAGACTACA
CGAAAATCCCATGGAATGAGTAAATTGGCACCCGTAGAGGATGTGGCAGT
GCGGACTCAGTTTGCTAAAAAAATTAACGGACATAGTTGCATATTTTGAA
AGATGATGAGTTGTCTGGTAG
back to top