CF503985

Overview
NameCF503985
Unique NameCF503985
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503985 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 400.593 bits (1028), Expect = 3.487e-111
Identity = 193/211 (91.47%), Postives = 203/211 (96.21%), Query Frame = 2
Query:    2 NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTKEDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVR 634
            NFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI PIMMSAGELESGNAGEPAKLIRQRYREA+D+I+KGKM CL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT+EDRIGVCKGIFR D V ++ +V+LVDTFPGQSIDFFGALRARVYDDEVR
Sbjct:  144 NFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVR 354          
BLAST of CF503985 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 400.593 bits (1028), Expect = 3.487e-111
Identity = 191/211 (90.52%), Postives = 202/211 (95.73%), Query Frame = 2
Query:    2 NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTKEDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVR 634
            NF+ LPNIKVPLILG+WGGKGQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+IIRKG +CCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT+EDRIGVCKGIFR DNV ++ ++K+VDTFPGQSIDFFGALRARVYDDEVR
Sbjct:  152 NFLKLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNICCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDDEVR 362          
BLAST of CF503985 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 400.208 bits (1027), Expect = 4.554e-111
Identity = 193/211 (91.47%), Postives = 200/211 (94.79%), Query Frame = 2
Query:    2 NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTKEDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVR 634
            NF+ LPNIKVPLILGIWGGKGQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+IIRKG MCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT+EDRIGVC GIFR DNV  +D+VK+VD FPGQSIDFFGALRARVYDDEVR
Sbjct:  152 NFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVR 362          
BLAST of CF503985 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 395.586 bits (1015), Expect = 1.122e-109
Identity = 191/211 (90.52%), Postives = 201/211 (95.26%), Query Frame = 2
Query:    2 NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTKEDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVR 634
            NFM+LPNIKVPLILG+WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA+D+I+KGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+N RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT+EDRIGVCKGIFR D V + DIV+LVD  PGQSIDFFGALRARVYDDEVR
Sbjct:  152 NFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMCVLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDDEVR 362          
BLAST of CF503985 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 384.8 bits (987), Expect = 1.980e-106
Identity = 184/211 (87.20%), Postives = 197/211 (93.36%), Query Frame = 2
Query:    2 NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTKEDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVR 634
            NF++LPNIK+PLILG+WGGKGQGKSFQCELVFAK+GINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC L INDL+ GAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK++N RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT+EDRIGVC GIF+ D V  + +VKLVD FPGQSIDFFGALRARVY DEVR
Sbjct:  146 NFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVR 356          
BLAST of CF503985 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 358.607 bits (919), Expect = 1.520e-98
Identity = 173/211 (81.99%), Postives = 187/211 (88.63%), Query Frame = 2
Query:    2 NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTKEDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVR 634
            NFM LP IKVPLILGIWGGKGQGK+FQC L + K+GI PI+MSAGELESGNAGEPAKLIR RYREA+DII+KG+MC L INDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPT VQLPG+Y  EE PRVPI+ TGNDFSTLYAPLIRDGRMEK+YW PT+EDRIGVC GIF+ DNV   ++  LVDTFPGQSIDFFGALRARVYDD VR
Sbjct:  121 NFMDLPKIKVPLILGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRYREASDIIKKGRMCSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQSIDFFGALRARVYDDMVR 331          
BLAST of CF503985 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 9.262e-80
Identity = 141/212 (66.51%), Postives = 174/212 (82.08%), Query Frame = 2
Query:    2 NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTKEDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVR 634
            NF++LP ++VPLILGI G KG+GK+FQCEL F KMG+   ++S GELES +AG+PA+LIR RYRE A++I+ +GKMC LMINDLDAGAGR    TQYTVN Q+VNATLMNIADNPT VQLPG Y+     RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P +++++G+  GIF  D ++  D+ KLVD+FP QSIDFF ALR+R+YD+++R
Sbjct:   20 NFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPHRDEKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIR 231          
BLAST of CF503985 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 2.695e-79
Identity = 142/212 (66.98%), Postives = 173/212 (81.60%), Query Frame = 2
Query:    2 NFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTKEDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVR 634
            NF+++P ++VPLILGI G KG+GK+FQCEL F KMGI   ++S GELES +AG+PA+LIR RYRE A++I+ +GKMC LMINDLDAGAGR    TQYTVN Q+VNATLMNIADNPT VQLPG Y+     RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P ++D++G+  GIF  D ++  +I +LVDTFP QSIDFF ALR+R+YD ++R
Sbjct:   20 NFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRDDKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIR 231          
BLAST of CF503985 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.356e-30
Identity = 92/195 (47.18%), Postives = 94/195 (48.21%), Query Frame = 2
Query:   23 IKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTKEDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALR 607
            ++VPLILGIWGGK              MGINPIMMSAGELESGNAGEPA                 KMCCL INDLDAGAG                                         RVPIIVTGNDFSTLYAPLI                RIGVC GIFR           LVDTFPGQSIDFFGALR
Sbjct:   45 LRVPLILGIWGGK--------------MGINPIMMSAGELESGNAGEPA-----------------KMCCLFINDLDAGAG-----------------------------------------RVPIIVTGNDFSTLYAPLI----------------RIGVCTGIFR-----------LVDTFPGQSIDFFGALR 140          
BLAST of CF503985 vs. ExPASy Swiss-Prot
Match: RCA_VITSX (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.666e-12
Identity = 39/61 (63.93%), Postives = 41/61 (67.21%), Query Frame = 2
Query:  101 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTT 283
            +MGINPIMMSAGELESGNAGEPA                 KMCCL INDLDAGAGR+G  T
Sbjct:   15 RMGINPIMMSAGELESGNAGEPA-----------------KMCCLFINDLDAGAGRIGVCT 58          
The following BLAST results are available for this feature:
BLAST of CF503985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RCA_MAIZE3.487e-11191.47Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC3.487e-11190.52Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC4.554e-11191.47Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU1.122e-10990.52Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL1.980e-10687.20Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE1.520e-9881.99Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC9.262e-8066.51Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP2.695e-7966.98Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY1.356e-3047.18Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_VITSX1.666e-1263.93Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-473 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503985 ID=CF503985; Name=CF503985; organism=Citrus sinensis; type=EST; length=635bp
GAACTTCATGTCCCTGCCCAACATCAAGGTTCCTCTCATCTTGGGTATTT
GGGGAGGCAAAGGACAAGGAAAATCATTCCAATGTGAGCTTGTTTTCGCC
AAGATGGGCATCAACCCAATTATGATGAGTGCCGGAGAATTGGAAAGTGG
CAATGCTGGAGAACCCGCTAAGTTGATCAGGCAGAGGTACCGTGAGGCAG
CTGACATTATCAGGAAGGGAAAAATGTGCTGCCTCATGATCAATGATCTT
GATGCAGGAGCTGGTCGTATGGGTGGCACCACCCAGTACACAGTTAACAA
CCAAATGGTTAACGCCACACTCATGAACATTGCTGATAACCCAACTTGTG
TCCAACTCCCTGGTATGTACAACAAGGAGGAGAACCCCCGTGTCCCAATC
ATAGTCACCGGTAATGACTTCTCAACATTGTATGCTCCTCTCATCCGTGA
TGGTCGTATGGAGAAATTCTACTGGGCACCTACAAAGGAGGACCGTATTG
GTGTGTGCAAGGGTATCTTCAGGAATGACAATGTGGCTGATGACGACATT
GTCAAGCTTGTTGACACCTTCCCCGGCCAATCCATTGATTTCTTTGGAGC
CCTGAGGGCCAGAGTCTATGATGATGAGGTGAGGA
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