CF503993

Overview
NameCF503993
Unique NameCF503993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length483
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503993 vs. ExPASy Swiss-Prot
Match: GMPPA_RAT (Mannose-1-phosphate guanyltransferase alpha OS=Rattus norvegicus GN=Gmppa PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.015e-16
Identity = 52/115 (45.22%), Postives = 69/115 (60.00%), Query Frame = 3
Query:  150 MKALILVGG--FGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD 482
            +KA+IL+GG   GTR RPL+  VPKPL   A  PMI H IEA   V G+ E++L   YQP E +  FL+  + +  + +   QE  PLGT G L   RD+++    E FFVLN+D
Sbjct:    2 LKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDEALTQFLEAAQQEFNLPVRYLQEFTPLGTGGGLYHFRDQILAGAPEAFFVLNAD 116          
BLAST of CF503993 vs. ExPASy Swiss-Prot
Match: GMPPA_MOUSE (Mannose-1-phosphate guanyltransferase alpha OS=Mus musculus GN=Gmppa PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.015e-16
Identity = 52/115 (45.22%), Postives = 69/115 (60.00%), Query Frame = 3
Query:  150 MKALILVGG--FGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD 482
            +KA+IL+GG   GTR RPL+  VPKPL   A  PMI H IEA   V G+ E++L   YQP E +  FL+  + +  + +   QE  PLGT G L   RD+++    E FFVLN+D
Sbjct:    2 LKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDEALTQFLEAAQQEFNLPVRYLQEFAPLGTGGGLYHFRDQILAGAPEAFFVLNAD 116          
BLAST of CF503993 vs. ExPASy Swiss-Prot
Match: GMPPA_PAPAN (Mannose-1-phosphate guanyltransferase alpha OS=Papio anubis GN=GMPPA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.326e-16
Identity = 52/115 (45.22%), Postives = 70/115 (60.87%), Query Frame = 3
Query:  150 MKALILVGG--FGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD 482
            +KA+IL+GG   GTR RPL+  VPKPL   A  PMI H IEA   V G+ E++L   YQP E +  FL+  + +  + +   QE  PLGT G L   RD+++  + E FFVLN+D
Sbjct:    2 LKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDEPLTQFLEAAQQEFNLPVRYLQEFAPLGTGGGLYHFRDQILAGSPEAFFVLNAD 116          
BLAST of CF503993 vs. ExPASy Swiss-Prot
Match: GMPPA_HUMAN (Mannose-1-phosphate guanyltransferase alpha OS=Homo sapiens GN=GMPPA PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.326e-16
Identity = 52/115 (45.22%), Postives = 70/115 (60.87%), Query Frame = 3
Query:  150 MKALILVGG--FGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD 482
            +KA+IL+GG   GTR RPL+  VPKPL   A  PMI H IEA   V G+ E++L   YQP E +  FL+  + +  + +   QE  PLGT G L   RD+++  + E FFVLN+D
Sbjct:    2 LKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQPDEPLTQFLEAAQQEFNLPVRYLQEFAPLGTGGGLYHFRDQILAGSPEAFFVLNAD 116          
BLAST of CF503993 vs. ExPASy Swiss-Prot
Match: GMPPA_DICDI (Mannose-1-phosphate guanyltransferase alpha OS=Dictyostelium discoideum GN=gmppA PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.266e-15
Identity = 51/115 (44.35%), Postives = 66/115 (57.39%), Query Frame = 3
Query:  147 TMKALILVGG--FGTRLRPLTLSVPKPLVEFANKPMILHQIEAL-KAVGVTEVVLAINYQPEVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD 482
            T KA+ILVGG   GTR RPL+L VPK L   A KPMI H IEA  K   + E++L   +Q  V+  F+ E   +L + I    E + LGTAG L   RD +++      FVL+SD
Sbjct:    5 TTKAIILVGGPSKGTRFRPLSLDVPKLLFPIAGKPMIYHHIEACSKVENMKEIILIGFFQESVLSKFISETSKQLNVAIRYINEEKVLGTAGGLYHFRDIILEGGPSEIFVLHSD 119          
BLAST of CF503993 vs. ExPASy Swiss-Prot
Match: GMPAA_XENLA (Mannose-1-phosphate guanyltransferase alpha-A OS=Xenopus laevis GN=gmppa-A PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.117e-14
Identity = 48/115 (41.74%), Postives = 67/115 (58.26%), Query Frame = 3
Query:  150 MKALILVGG--FGTRLRPLTLSVPKPLVEFANKPMILHQIEAL-KAVGVTEVVLAINYQPEVMLN-FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD 482
            +KA+IL+GG   GTR RPL+  VPKPL   A  PM+ H IEA  K   + E++L   YQP   LN FL + + +  + I   QE   LGT G +   RD+++    + FFV+N+D
Sbjct:    2 LKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMVQHHIEACSKVPNLKEILLIGFYQPNEALNSFLLKAQQEFKVAIRYLQEYSALGTGGGIYHFRDQILSGGPQAFFVMNAD 116          
BLAST of CF503993 vs. ExPASy Swiss-Prot
Match: GMPPA_XENTR (Mannose-1-phosphate guanyltransferase alpha OS=Xenopus tropicalis GN=gmppa PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.765e-14
Identity = 47/115 (40.87%), Postives = 68/115 (59.13%), Query Frame = 3
Query:  150 MKALILVGG--FGTRLRPLTLSVPKPLVEFANKPMILHQIEAL-KAVGVTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD 482
            +KA+IL+GG   GTR RPL+  VPKPL   A  PM+ H IEA  K   + E++L   YQP E + +FL + + +  + I   QE   LGT G +   RD+++    + FFV+N+D
Sbjct:    2 LKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMVQHHIEACSKVPNLKEILLIGFYQPNEALSSFLLKAQQEFKVAIRYLQEYSALGTGGGIYHFRDQILSGGPQAFFVMNAD 116          
BLAST of CF503993 vs. ExPASy Swiss-Prot
Match: GMPAB_XENLA (Mannose-1-phosphate guanyltransferase alpha-B OS=Xenopus laevis GN=gmppa-B PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.765e-14
Identity = 47/115 (40.87%), Postives = 68/115 (59.13%), Query Frame = 3
Query:  150 MKALILVGG--FGTRLRPLTLSVPKPLVEFANKPMILHQIEAL-KAVGVTEVVLAINYQP-EVMLNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD 482
            +KA+IL+GG   GTR RPL+  VPKPL   A  PM+ H IEA  K   + E++L   YQP E + +FL + + +  + I   QE   LGT G +   RD+++    + FFV+N+D
Sbjct:    2 LKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMVQHHIEACSKVPNLKEILLIGFYQPNEALSSFLLKAQQEFKVAIRYLQEYSALGTGGGIYHFRDQILSGGPQAFFVMNAD 116          
BLAST of CF503993 vs. ExPASy Swiss-Prot
Match: GMPAA_DANRE (Mannose-1-phosphate guanyltransferase alpha-A OS=Danio rerio GN=gmppaa PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.372e-13
Identity = 49/115 (42.61%), Postives = 65/115 (56.52%), Query Frame = 3
Query:  150 MKALILVGG--FGTRLRPLTLSVPKPLVEFANKPMILHQIEAL-KAVGVTEVVLAINYQPEVMLN-FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD 482
            +KA+IL+GG   GTR RPL+  VPKPL   A  PM+ H IEA  K   + E++L   YQP   LN FL   +    I I   QE   LGT G +   RD+++    + FFV+N+D
Sbjct:    2 LKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMLQHHIEACSKLPNMKEILLIGFYQPNEELNRFLSCAQQDFKISIRYLQEYAALGTGGGIYHFRDQILSGGPDAFFVMNAD 116          
BLAST of CF503993 vs. ExPASy Swiss-Prot
Match: GMPAB_DANRE (Mannose-1-phosphate guanyltransferase alpha-B OS=Danio rerio GN=gmppab PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.810e-13
Identity = 47/115 (40.87%), Postives = 65/115 (56.52%), Query Frame = 3
Query:  150 MKALILVGG--FGTRLRPLTLSVPKPLVEFANKPMILHQIEALKAV-GVTEVVLAINYQPEVMLN-FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD 482
            +KA+IL+GG   GTR RPL+  VPKPL   A  PM+ H IEA   V  + E++L   YQP   LN F+   + +  I I   QE   LGT G +   RD+++      FF++N+D
Sbjct:    2 LKAIILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMLQHHIEACAQVPDMKEIMLIGFYQPNDELNRFIYSAQQEFKIPIRYLQEFAALGTGGGIYHFRDQILSGGPAAFFLMNAD 116          
The following BLAST results are available for this feature:
BLAST of CF503993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
GMPPA_RAT1.015e-1645.22Mannose-1-phosphate guanyltransferase alpha OS=Rat... [more]
GMPPA_MOUSE1.015e-1645.22Mannose-1-phosphate guanyltransferase alpha OS=Mus... [more]
GMPPA_PAPAN1.326e-1645.22Mannose-1-phosphate guanyltransferase alpha OS=Pap... [more]
GMPPA_HUMAN1.326e-1645.22Mannose-1-phosphate guanyltransferase alpha OS=Hom... [more]
GMPPA_DICDI3.266e-1544.35Mannose-1-phosphate guanyltransferase alpha OS=Dic... [more]
GMPAA_XENLA2.117e-1441.74Mannose-1-phosphate guanyltransferase alpha-A OS=X... [more]
GMPPA_XENTR2.765e-1440.87Mannose-1-phosphate guanyltransferase alpha OS=Xen... [more]
GMPAB_XENLA2.765e-1440.87Mannose-1-phosphate guanyltransferase alpha-B OS=X... [more]
GMPAA_DANRE1.372e-1342.61Mannose-1-phosphate guanyltransferase alpha-A OS=D... [more]
GMPAB_DANRE6.810e-1340.87Mannose-1-phosphate guanyltransferase alpha-B OS=D... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-481 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503993 ID=CF503993; Name=CF503993; organism=Citrus sinensis; type=EST; length=483bp
CAAAGCAAAAGCGAAGCGCGCGAAGCTCGCCTCATCCGTTGACTGAGCTG
TCGGTCCCGAGTCACGACTCGCGACTCTTGTTTTTCAACTCAGTTGTTTG
CCGTTCGGATCCGGTCTTAATTAAAGGATAAAGCAGGCTCCGTATCACAA
TGAAGGCACTTATTCTTGTTGGAGGGTTCGGAACACGGTTGAGGCCGTTG
ACGCTTAGTGTCCCTAAGCCACTTGTTGAATTTGCTAACAAACCCATGAT
CCTGCATCAGATAGAGGCCCTTAAGGCAGTTGGAGTGACTGAAGTAGTTT
TGGCTATTAACTACCAGCCAGAGGTGATGTTGAACTTTTTGAAGGAATTT
GAAGCAAAGCTTGGGATCAAGATCATCTGCTCACAAGAGACTGAGCCACT
GGGCACTGCTGGTCCTCTGGCTCTGGCTAGAGACAAATTGATTGACGATA
CTGGTGAGCCATTTTTCGTCCTTAACAGTGATG
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