CF504010
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: WD51B_HUMAN (WD repeat-containing protein 51B OS=Homo sapiens GN=WDR51B PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 3.648e-13 Identity = 39/116 (33.62%), Postives = 64/116 (55.17%), Query Frame = 3 Query: 3 SIDNRQIVSASRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 347 S D + + +AS D++IK+W+ + Y++ HT WV C +FSP+ IVS S D+T+K+W+ +N + + G+ N V +P G+ AS G D + +WD+ K L Sbjct: 111 SADGQFLATASEDKSIKVWSMYRQRFLYSLYR---HTHWVRCAKFSPDGR--LIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLL 221 HSP 2 Score: 68.9366 bits (167), Expect = 8.986e-12 Identity = 40/101 (39.60%), Postives = 58/101 (57.43%), Query Frame = 3 Query: 21 IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 323 I SA D+T+K+W+ +Q H+ V+C+ F P+ +++AS D T+K+ +L +L TL GHTG V TV+ S G L ASGG D +LLW Sbjct: 201 IASAGSDQTVKVWDV--RVNKLLQHYQVHSGGVNCISFHPSGNY--LITASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELFASGGADTQVLLW 297 HSP 3 Score: 68.5514 bits (166), Expect = 1.174e-11 Identity = 41/116 (35.34%), Postives = 61/116 (52.59%), Query Frame = 3 Query: 3 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY 350 S D R IVS S D+TIK+W+T K + + + V F+P+ I SA D+TVKVW++ KL H+G VN ++ P G+ + DG + + DL EG+ +Y Sbjct: 153 SPDGRLIVSCSEDKTIKIWDTTN--KQCVNNFSDSVGFANFVDFNPSGT--CIASAGSDQTVKVWDVRVNKLLQHYQVHSGGVNCISFHPSGNYLITASSDGTLKILDLLEGRLIY 264
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: TG125_CAEBR (WD repeat-containing protein tag-125 OS=Caenorhabditis briggsae GN=tag-125 PE=4 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 3.648e-13 Identity = 39/113 (34.51%), Postives = 65/113 (57.52%), Query Frame = 3 Query: 3 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK 341 S D++ IV+AS D+T+K++ +G HT +V C F+P + +VS S+D +V++W++ TL H+ V+ V+ + DGSL SG DG++ +WD A G+ Sbjct: 130 SADSKSIVTASDDKTLKIYEVPTVKMAKTLKG--HTNYVFCCNFNPQS--SLVVSGSFDESVRIWDVRTGMCVKTLPAHSDPVSAVSFNRDGSLITSGSYDGLVRIWDTANGQ 238
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: Y143_SYNY3 (Uncharacterized WD repeat-containing protein slr0143 OS=Synechocystis sp. (strain PCC 6803) GN=slr0143 PE=4 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 8.127e-13 Identity = 45/109 (41.28%), Postives = 58/109 (53.21%), Query Frame = 3 Query: 21 IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 347 I SASRD T+ LW GE ++E HT + V FSPN +A D+TVK+W+L L TL GH V +V+ SPDG + AS +D + LW GK L Sbjct: 575 IASASRDGTVHLWTPQGEF---LREFTGHTGSIYRVDFSPNG--KIFATAGQDQTVKIWDLDG-NLLQTLKGHQDSVYSVSFSPDGEILASTSRDRTVRLWHWRSGKTL 677 HSP 2 Score: 68.1662 bits (165), Expect = 1.533e-11 Identity = 40/109 (36.70%), Postives = 59/109 (54.13%), Query Frame = 3 Query: 3 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 329 S + + +A +D+T+K+W+ G T++ H + V V FSP+ + S S DRTV++W+ + K A L GHT V+ SPDG S +DG I LWDL Sbjct: 610 SPNGKIFATAGQDQTVKIWDLDGNLLQTLK---GHQDSVYSVSFSPDG--EILASTSRDRTVRLWHWRSGKTLAVLGGHTKSVDDAQFSPDGQTLVSVCRDGQIRLWDL 713
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: LIS1_DICDI (Lissencephaly-1 homolog OS=Dictyostelium discoideum GN=lis1 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 8.127e-13 Identity = 43/110 (39.09%), Postives = 61/110 (55.45%), Query Frame = 3 Query: 21 IVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 347 + S S D TIKLW+ +C T+ H VSCVRF+P+ Q ++S+S D+T+KVW + TL GH +V + VS DGS AS D I W++ +G+ L Sbjct: 163 LASCSADLTIKLWDFQTYDCVKTLH---GHDHNVSCVRFTPSGDQ--LISSSRDKTIKVWEAATGYCIKTLVGHEDWVRKITVSEDGSCIASCSNDQTIKTWNIVKGECL 267 HSP 2 Score: 68.5514 bits (166), Expect = 1.174e-11 Identity = 46/142 (32.39%), Postives = 64/142 (45.07%), Query Frame = 3 Query: 3 SIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFS-------PNTLQPT---------------------IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK 341 S D I S S D+TIK WN + GEC T +E H+ V C+ FS P +L T + + S D+T+K+W L+ + AT GH +V V P G S G D I +WD+A+G+ Sbjct: 241 SEDGSCIASCSNDQTIKTWNIVKGECLATYRE---HSHVVECLAFSTANIIDIPGSLLSTPEGKSKVKQGPGGNLVGQCGYLATGSRDKTIKIWELATGRCLATYIGHDNWVRAVRFHPCGKFLLSVGDDKTIRVWDIAQGR 379
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: WDR12_CHLRE (Ribosome biogenesis protein WDR12 homolog OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_128420 PE=3 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 1.386e-12 Identity = 44/117 (37.61%), Postives = 62/117 (52.99%), Query Frame = 3 Query: 21 IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN---------CKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR 344 +VS S D ++LWN G+ + + AH V+CVRF P + ++++ DR VK+W LS+ C+L AT GH V VA SP G AS G DG +L+W+ E R Sbjct: 126 VVSGSYDGLLRLWN--GDLE-AVASVSAHAGGVNCVRFLPKSQGDLLLTSGKDRLVKMWQLSSSEEEDAGPSCRLVATYRGHEDGVEAVAASPSGRRFASCGWDGKLLVWEGGEQLR 239
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: TUP1_DICDI (General transcriptional corepressor tupA OS=Dictyostelium discoideum GN=tupA PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.386e-12 Identity = 41/116 (35.34%), Postives = 63/116 (54.31%), Query Frame = 3 Query: 3 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK----LRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG 338 S D R + + S D ++LW+ + Y ++ + H + V V FSP+ ++ S S D+++K+W+LS + RAT GH +V +VA SPDGS SG KD + WD G Sbjct: 424 SPDGRLVAAGSLDNIVRLWDA--QTGYFLERYEGHLDSVYSVAFSPDG--KSLASGSLDKSLKLWDLSGSRSRSRCRATFNGHKDFVLSVAFSPDGSWLISGSKDRSVQFWDPRNG 535
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: WDR48_DROPS (WD repeat-containing protein 48 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA21511 PE=3 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 1.811e-12 Identity = 43/109 (39.45%), Postives = 58/109 (53.21%), Query Frame = 3 Query: 9 DNRQIVSASRDRTIKLWNTLGEC--KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 329 +N ++ SA RD I++WNT E KY IQ + H +WV+ + N ++SAS D TVKVWN +TL H YV +A + D AS G D I LWD+ Sbjct: 39 NNGKLYSAGRDAIIRVWNTRSESSEKY-IQSMEHHNDWVNDIVLCCNGRN--LISASCDTTVKVWNAQKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDV 144
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: WDR48_DROPE (WD repeat-containing protein 48 homolog OS=Drosophila persimilis GN=GL16745 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.811e-12 Identity = 43/109 (39.45%), Postives = 58/109 (53.21%), Query Frame = 3 Query: 9 DNRQIVSASRDRTIKLWNTLGEC--KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 329 +N ++ SA RD I++WNT E KY IQ + H +WV+ + N ++SAS D TVKVWN +TL H YV +A + D AS G D I LWD+ Sbjct: 39 NNGKLYSAGRDAIIRVWNTRSESSEKY-IQSMEHHNDWVNDIVLCCNGRN--LISASCDTTVKVWNAQKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDV 144
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: POF1_SCHPO (F-box/WD repeat-containing protein pof1 OS=Schizosaccharomyces pombe GN=pof1 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.811e-12 Identity = 46/108 (42.59%), Postives = 60/108 (55.56%), Query Frame = 3 Query: 9 DNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 329 D +++S S D+TI++WN EC +I G HT+ V C+ F L VS S D TVK+W+ S K R TL GHTG VN+V + D L SG D I +W L Sbjct: 322 DQCKLISGSMDKTIRIWNYRTSEC-ISILHG--HTDSVLCLTFDSTLL----VSGSADCTVKLWHFSGGK-RITLRGHTGPVNSVRIIRDRGLVLSGSDDSTIKIWSL 421
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: KTNB1_MOUSE (Katanin p80 WD40-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 1.811e-12 Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = 3 Query: 21 IVSASRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 329 + S S+D IKLW+ + C + + H++ V C+RFSP+ + SA+ D TVK+W+L+ K+ + GHTG VN V P+ L ASG D I WDL Sbjct: 120 VASGSQDTNIKLWDIRRKGCVFRYR---GHSQAVRCLRFSPDG--KWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDL 218 The following BLAST results are available for this feature:
BLAST of CF504010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 109
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504010 ID=CF504010; Name=CF504010; organism=Citrus sinensis; type=EST; length=351bpback to top |