CF504010

Overview
NameCF504010
Unique NameCF504010
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length351
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: WD51B_HUMAN (WD repeat-containing protein 51B OS=Homo sapiens GN=WDR51B PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.648e-13
Identity = 39/116 (33.62%), Postives = 64/116 (55.17%), Query Frame = 3
Query:    3 SIDNRQIVSASRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 347
            S D + + +AS D++IK+W+   +   Y++     HT WV C +FSP+     IVS S D+T+K+W+ +N +     +   G+ N V  +P G+  AS G D  + +WD+   K L
Sbjct:  111 SADGQFLATASEDKSIKVWSMYRQRFLYSLYR---HTHWVRCAKFSPDGR--LIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLL 221          

HSP 2 Score: 68.9366 bits (167), Expect = 8.986e-12
Identity = 40/101 (39.60%), Postives = 58/101 (57.43%), Query Frame = 3
Query:   21 IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 323
            I SA  D+T+K+W+        +Q    H+  V+C+ F P+     +++AS D T+K+ +L   +L  TL GHTG V TV+ S  G L ASGG D  +LLW
Sbjct:  201 IASAGSDQTVKVWDV--RVNKLLQHYQVHSGGVNCISFHPSGNY--LITASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELFASGGADTQVLLW 297          

HSP 3 Score: 68.5514 bits (166), Expect = 1.174e-11
Identity = 41/116 (35.34%), Postives = 61/116 (52.59%), Query Frame = 3
Query:    3 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY 350
            S D R IVS S D+TIK+W+T    K  +        + + V F+P+     I SA  D+TVKVW++   KL      H+G VN ++  P G+   +   DG + + DL EG+ +Y
Sbjct:  153 SPDGRLIVSCSEDKTIKIWDTTN--KQCVNNFSDSVGFANFVDFNPSGT--CIASAGSDQTVKVWDVRVNKLLQHYQVHSGGVNCISFHPSGNYLITASSDGTLKILDLLEGRLIY 264          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: TG125_CAEBR (WD repeat-containing protein tag-125 OS=Caenorhabditis briggsae GN=tag-125 PE=4 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.648e-13
Identity = 39/113 (34.51%), Postives = 65/113 (57.52%), Query Frame = 3
Query:    3 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK 341
            S D++ IV+AS D+T+K++           +G  HT +V C  F+P +    +VS S+D +V++W++       TL  H+  V+ V+ + DGSL  SG  DG++ +WD A G+
Sbjct:  130 SADSKSIVTASDDKTLKIYEVPTVKMAKTLKG--HTNYVFCCNFNPQS--SLVVSGSFDESVRIWDVRTGMCVKTLPAHSDPVSAVSFNRDGSLITSGSYDGLVRIWDTANGQ 238          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: Y143_SYNY3 (Uncharacterized WD repeat-containing protein slr0143 OS=Synechocystis sp. (strain PCC 6803) GN=slr0143 PE=4 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.127e-13
Identity = 45/109 (41.28%), Postives = 58/109 (53.21%), Query Frame = 3
Query:   21 IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 347
            I SASRD T+ LW   GE    ++E   HT  +  V FSPN       +A  D+TVK+W+L    L  TL GH   V +V+ SPDG + AS  +D  + LW    GK L
Sbjct:  575 IASASRDGTVHLWTPQGEF---LREFTGHTGSIYRVDFSPNG--KIFATAGQDQTVKIWDLDG-NLLQTLKGHQDSVYSVSFSPDGEILASTSRDRTVRLWHWRSGKTL 677          

HSP 2 Score: 68.1662 bits (165), Expect = 1.533e-11
Identity = 40/109 (36.70%), Postives = 59/109 (54.13%), Query Frame = 3
Query:    3 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 329
            S + +   +A +D+T+K+W+  G    T++    H + V  V FSP+     + S S DRTV++W+  + K  A L GHT  V+    SPDG    S  +DG I LWDL
Sbjct:  610 SPNGKIFATAGQDQTVKIWDLDGNLLQTLK---GHQDSVYSVSFSPDG--EILASTSRDRTVRLWHWRSGKTLAVLGGHTKSVDDAQFSPDGQTLVSVCRDGQIRLWDL 713          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: LIS1_DICDI (Lissencephaly-1 homolog OS=Dictyostelium discoideum GN=lis1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.127e-13
Identity = 43/110 (39.09%), Postives = 61/110 (55.45%), Query Frame = 3
Query:   21 IVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 347
            + S S D TIKLW+    +C  T+     H   VSCVRF+P+  Q  ++S+S D+T+KVW  +      TL GH  +V  + VS DGS  AS   D  I  W++ +G+ L
Sbjct:  163 LASCSADLTIKLWDFQTYDCVKTLH---GHDHNVSCVRFTPSGDQ--LISSSRDKTIKVWEAATGYCIKTLVGHEDWVRKITVSEDGSCIASCSNDQTIKTWNIVKGECL 267          

HSP 2 Score: 68.5514 bits (166), Expect = 1.174e-11
Identity = 46/142 (32.39%), Postives = 64/142 (45.07%), Query Frame = 3
Query:    3 SIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFS-------PNTLQPT---------------------IVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK 341
            S D   I S S D+TIK WN + GEC  T +E   H+  V C+ FS       P +L  T                     + + S D+T+K+W L+  +  AT  GH  +V  V   P G    S G D  I +WD+A+G+
Sbjct:  241 SEDGSCIASCSNDQTIKTWNIVKGECLATYRE---HSHVVECLAFSTANIIDIPGSLLSTPEGKSKVKQGPGGNLVGQCGYLATGSRDKTIKIWELATGRCLATYIGHDNWVRAVRFHPCGKFLLSVGDDKTIRVWDIAQGR 379          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: WDR12_CHLRE (Ribosome biogenesis protein WDR12 homolog OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_128420 PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.386e-12
Identity = 44/117 (37.61%), Postives = 62/117 (52.99%), Query Frame = 3
Query:   21 IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSN---------CKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKR 344
            +VS S D  ++LWN  G+ +  +    AH   V+CVRF P +    ++++  DR VK+W LS+         C+L AT  GH   V  VA SP G   AS G DG +L+W+  E  R
Sbjct:  126 VVSGSYDGLLRLWN--GDLE-AVASVSAHAGGVNCVRFLPKSQGDLLLTSGKDRLVKMWQLSSSEEEDAGPSCRLVATYRGHEDGVEAVAASPSGRRFASCGWDGKLLVWEGGEQLR 239          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: TUP1_DICDI (General transcriptional corepressor tupA OS=Dictyostelium discoideum GN=tupA PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.386e-12
Identity = 41/116 (35.34%), Postives = 63/116 (54.31%), Query Frame = 3
Query:    3 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCK----LRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG 338
            S D R + + S D  ++LW+   +  Y ++  + H + V  V FSP+    ++ S S D+++K+W+LS  +     RAT  GH  +V +VA SPDGS   SG KD  +  WD   G
Sbjct:  424 SPDGRLVAAGSLDNIVRLWDA--QTGYFLERYEGHLDSVYSVAFSPDG--KSLASGSLDKSLKLWDLSGSRSRSRCRATFNGHKDFVLSVAFSPDGSWLISGSKDRSVQFWDPRNG 535          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: WDR48_DROPS (WD repeat-containing protein 48 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA21511 PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.811e-12
Identity = 43/109 (39.45%), Postives = 58/109 (53.21%), Query Frame = 3
Query:    9 DNRQIVSASRDRTIKLWNTLGEC--KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 329
            +N ++ SA RD  I++WNT  E   KY IQ  + H +WV+ +    N     ++SAS D TVKVWN       +TL  H  YV  +A + D    AS G D  I LWD+
Sbjct:   39 NNGKLYSAGRDAIIRVWNTRSESSEKY-IQSMEHHNDWVNDIVLCCNGRN--LISASCDTTVKVWNAQKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDV 144          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: WDR48_DROPE (WD repeat-containing protein 48 homolog OS=Drosophila persimilis GN=GL16745 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.811e-12
Identity = 43/109 (39.45%), Postives = 58/109 (53.21%), Query Frame = 3
Query:    9 DNRQIVSASRDRTIKLWNTLGEC--KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 329
            +N ++ SA RD  I++WNT  E   KY IQ  + H +WV+ +    N     ++SAS D TVKVWN       +TL  H  YV  +A + D    AS G D  I LWD+
Sbjct:   39 NNGKLYSAGRDAIIRVWNTRSESSEKY-IQSMEHHNDWVNDIVLCCNGRN--LISASCDTTVKVWNAQKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDV 144          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: POF1_SCHPO (F-box/WD repeat-containing protein pof1 OS=Schizosaccharomyces pombe GN=pof1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.811e-12
Identity = 46/108 (42.59%), Postives = 60/108 (55.56%), Query Frame = 3
Query:    9 DNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 329
            D  +++S S D+TI++WN    EC  +I  G  HT+ V C+ F    L    VS S D TVK+W+ S  K R TL GHTG VN+V +  D  L  SG  D  I +W L
Sbjct:  322 DQCKLISGSMDKTIRIWNYRTSEC-ISILHG--HTDSVLCLTFDSTLL----VSGSADCTVKLWHFSGGK-RITLRGHTGPVNSVRIIRDRGLVLSGSDDSTIKIWSL 421          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: KTNB1_MOUSE (Katanin p80 WD40-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.811e-12
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = 3
Query:   21 IVSASRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 329
            + S S+D  IKLW+   + C +  +    H++ V C+RFSP+     + SA+ D TVK+W+L+  K+ +   GHTG VN V   P+  L ASG  D  I  WDL
Sbjct:  120 VASGSQDTNIKLWDIRRKGCVFRYR---GHSQAVRCLRFSPDG--KWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDL 218          
The following BLAST results are available for this feature:
BLAST of CF504010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
WD51B_HUMAN3.648e-1333.62WD repeat-containing protein 51B OS=Homo sapiens G... [more]
TG125_CAEBR3.648e-1334.51WD repeat-containing protein tag-125 OS=Caenorhabd... [more]
Y143_SYNY38.127e-1341.28Uncharacterized WD repeat-containing protein slr01... [more]
LIS1_DICDI8.127e-1339.09Lissencephaly-1 homolog OS=Dictyostelium discoideu... [more]
WDR12_CHLRE1.386e-1237.61Ribosome biogenesis protein WDR12 homolog OS=Chlam... [more]
TUP1_DICDI1.386e-1235.34General transcriptional corepressor tupA OS=Dictyo... [more]
WDR48_DROPS1.811e-1239.45WD repeat-containing protein 48 homolog OS=Drosoph... [more]
WDR48_DROPE1.811e-1239.45WD repeat-containing protein 48 homolog OS=Drosoph... [more]
POF1_SCHPO1.811e-1242.59F-box/WD repeat-containing protein pof1 OS=Schizos... [more]
KTNB1_MOUSE1.811e-1239.42Katanin p80 WD40-containing subunit B1 OS=Mus musc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-498 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504010 ID=CF504010; Name=CF504010; organism=Citrus sinensis; type=EST; length=351bp
TCTCGATCGACAACCGTCAGATTGTATCGGCCTCTCGTGACCGTACGATC
AAGTTGTGGAACACGCTCGGCGAGTGCAAGTACACGATTCAAGAGGGAGA
CGCTCACACTGAGTGGGTTTCTTGTGTTAGGTTCAGCCCCAACACGCTTC
AGCCCACTATCGTTTCCGCCTCGTGGGACCGTACGGTCAAAGTGTGGAAT
TTGAGCAACTGCAAGCTTAGGGCTACTCTTGCCGGGCACACTGGATACGT
GAACACCGTCGCAGTGTCGCCGGATGGTTCGTTGTGTGCCAGTGGAGGGA
AAGATGGTGTGATTCTGTTGTGGGATTTGGCTGAGGGAAAAAGACTCTAC
T
back to top