CF504010

Overview
NameCF504010
Unique NameCF504010
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length351
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: KTNB1_HUMAN (Katanin p80 WD40-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.811e-12
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = 3
Query:   21 IVSASRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 329
            + S S+D  IKLW+   + C +  +    H++ V C+RFSP+     + SA+ D TVK+W+L+  K+ +   GHTG VN V   P+  L ASG  D  I  WDL
Sbjct:  120 VASGSQDTNIKLWDIRRKGCVFRYR---GHSQAVRCLRFSPDG--KWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDL 218          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: WD51A_HUMAN (WD repeat-containing protein 51A OS=Homo sapiens GN=WDR51A PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.365e-12
Identity = 39/107 (36.45%), Postives = 60/107 (56.07%), Query Frame = 3
Query:    9 DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 329
            D +  V+AS D+T+K+W T  + K+       H  WV C +FSP+     IVSAS D+TVK+W+ S+ +   +   H G+V  V   P G+  A+ G D  + +WD+
Sbjct:  114 DGQSFVTASDDKTVKVWATHRQ-KFLFSLSQ-HINWVRCAKFSPDGR--LIVSASDDKTVKLWDKSSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDV 216          

HSP 2 Score: 65.4698 bits (158), Expect = 9.935e-11
Identity = 42/117 (35.90%), Postives = 62/117 (52.99%), Query Frame = 3
Query:    3 SIDNRQIVSASRDRTIKLWNTLG-ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY 350
            S D R IVSAS D+T+KLW+    EC ++  E   H  +V+ V F P+     I +A  D TVKVW++   +L      H+  VN ++  P G+   +   D  + + DL EG+ LY
Sbjct:  154 SPDGRLIVSASDDKTVKLWDKSSRECVHSYCE---HGGFVTYVDFHPSGT--CIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNGLSFHPSGNYLITASSDSTLKILDLMEGRLLY 265          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: WD51A_BOVIN (WD repeat-containing protein 51A OS=Bos taurus GN=WDR51A PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.365e-12
Identity = 38/107 (35.51%), Postives = 61/107 (57.01%), Query Frame = 3
Query:    9 DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 329
            D +  V+AS D+T+K+W+T  + K+       H  WV C +FSP+     IVSAS D+TVK+W+ ++ +   +   H G+V  V   P G+  A+ G D  + +WD+
Sbjct:  114 DGQSFVTASDDKTVKVWSTHRQ-KFLFSLSQ-HINWVRCAKFSPDGR--LIVSASDDKTVKLWDKTSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDV 216          

HSP 2 Score: 68.1662 bits (165), Expect = 1.533e-11
Identity = 43/117 (36.75%), Postives = 63/117 (53.85%), Query Frame = 3
Query:    3 SIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY 350
            S D R IVSAS D+T+KLW+ T  EC ++  E   H  +V+ V F P+     I +A  D TVKVW++   +L      H+  VN ++  P G+   +   D  + + DL EG+ LY
Sbjct:  154 SPDGRLIVSASDDKTVKLWDKTSRECVHSYCE---HGGFVTYVDFHPSGT--CIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHPSGNYLVTASSDSTLKILDLMEGRLLY 265          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: TAF5_YEAST (Transcription initiation factor TFIID subunit 5 OS=Saccharomyces cerevisiae GN=TAF5 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.365e-12
Identity = 38/107 (35.51%), Postives = 60/107 (56.07%), Query Frame = 3
Query:   27 SASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 347
            +AS D+T +LW+   +  Y ++    H   V CV F PN     + + S D+T ++W++S         GHT  V ++AV PDG   ++G +DG+I +WD+  GKRL
Sbjct:  584 TASHDQTARLWSC--DHIYPLRIFAGHLNDVDCVSFHPNGCY--VFTGSSDKTCRMWDVSTGDSVRLFLGHTAPVISIAVCPDGRWLSTGSEDGIINVWDIGTGKRL 686          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: WDR5_DICDI (WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.088e-12
Identity = 40/114 (35.09%), Postives = 67/114 (58.77%), Query Frame = 3
Query:    3 SIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK 341
            S D + + SAS D+TIK+W    G+ + T++    H E +S + +S ++    I SAS D+T+K+W++ + K+  TL GH  YV  V+ +P  +L  SG  D  + +WD+  G+
Sbjct:   55 SPDGKWLASASADKTIKIWGAYDGKFERTLE---GHKEGISDIAWSQDS--KLICSASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNLIVSGSFDENVRIWDVNTGE 163          

HSP 2 Score: 69.707 bits (169), Expect = 5.268e-12
Identity = 39/115 (33.91%), Postives = 64/115 (55.65%), Query Frame = 3
Query:    3 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 347
            S D++ I SAS D+TIK+W+   E    ++    H E+V  V F+P +    IVS S+D  V++W+++  +    ++ H+  V  V  + DG+L  SG  DG + +WD   G+ L
Sbjct:   97 SQDSKLICSASDDKTIKIWDV--ESGKMVKTLKGHKEYVFGVSFNPQS--NLIVSGSFDENVRIWDVNTGECTKMISAHSDPVTGVHFNRDGTLVVSGSYDGTVRIWDTTTGQLL 207          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: WDR48_DROMO (WD repeat-containing protein 48 homolog OS=Drosophila mojavensis GN=GI19644 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.088e-12
Identity = 43/109 (39.45%), Postives = 58/109 (53.21%), Query Frame = 3
Query:    9 DNRQIVSASRDRTIKLWNTLGEC--KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 329
            +N ++ SA RD  I++WNT  E   KY IQ  + H +WV+ +    N     ++SAS D TVKVWN       +TL  H  YV  +A + D    AS G D  I LWD+
Sbjct:   39 NNGKLYSAGRDAIIRVWNTRTEANEKY-IQSMEHHNDWVNDIVLCCNGRN--LISASCDTTVKVWNAHKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDV 144          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: WDR48_DROAN (WD repeat-containing protein 48 homolog OS=Drosophila ananassae GN=GF12420 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.088e-12
Identity = 43/109 (39.45%), Postives = 58/109 (53.21%), Query Frame = 3
Query:    9 DNRQIVSASRDRTIKLWNTLGEC--KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 329
            +N ++ SA RD  I++WNT  E   KY IQ  + H +WV+ +    N     ++SAS D TVKVWN       +TL  H  YV  +A + D    AS G D  I LWD+
Sbjct:   39 NNGKLYSAGRDAIIRVWNTRTESNEKY-IQSMEHHNDWVNDIVLCCNGRN--LISASCDTTVKVWNAQKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDV 144          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: WDR48_DROVI (WD repeat-containing protein 48 homolog OS=Drosophila virilis GN=GJ15009 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.033e-12
Identity = 43/109 (39.45%), Postives = 58/109 (53.21%), Query Frame = 3
Query:    9 DNRQIVSASRDRTIKLWNTLGEC--KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 329
            +N ++ SA RD  I++WNT  E   KY IQ  + H +WV+ +    N     ++SAS D TVKVWN       +TL  H  YV  +A + D    AS G D  I LWD+
Sbjct:   39 NNGKLYSAGRDAIIRVWNTRTESNDKY-IQSMEHHNDWVNDIVLCCNGRN--LISASCDTTVKVWNAHKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDV 144          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: WDR48_DROGR (WD repeat-containing protein 48 homolog OS=Drosophila grimshawi GN=GH21936 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.033e-12
Identity = 43/109 (39.45%), Postives = 58/109 (53.21%), Query Frame = 3
Query:    9 DNRQIVSASRDRTIKLWNTLGEC--KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 329
            +N ++ SA RD  I++WNT  E   KY IQ  + H +WV+ +    N     ++SAS D TVKVWN       +TL  H  YV  +A + D    AS G D  I LWD+
Sbjct:   39 NNGKLYSAGRDAIIRVWNTRTESNEKY-IQSMEHHNDWVNDIVLCCNGRN--LISASCDTTVKVWNAHKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDV 144          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: WD51A_MOUSE (WD repeat-containing protein 51A OS=Mus musculus GN=Wdr51a PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 4.033e-12
Identity = 37/107 (34.58%), Postives = 63/107 (58.88%), Query Frame = 3
Query:    9 DNRQIVSASRDRTIKLWNTLGE-CKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWD 326
            D + +V+AS D+T+K+W+T  +   +++ +   H  WV C +FSP+     IVSAS D+TVK+W+ ++ +   +   H G+V  V   P G+  A+ G D  + +WD
Sbjct:  114 DGQSLVTASDDKTVKVWSTHRQRFLFSLTQ---HINWVRCAKFSPDGR--LIVSASDDKTVKLWDKTSRECIHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWD 215          

HSP 2 Score: 66.6254 bits (161), Expect = 4.460e-11
Identity = 43/117 (36.75%), Postives = 62/117 (52.99%), Query Frame = 3
Query:    3 SIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLY 350
            S D R IVSAS D+T+KLW+ T  EC ++  E   H  +V+ V F P+     I +A  D TVKVW+    +L      H+  VN ++  P G+   +   D  + + DL EG+ LY
Sbjct:  154 SPDGRLIVSASDDKTVKLWDKTSRECIHSYCE---HGGFVTYVDFHPSGT--CIAAAGMDNTVKVWDARTHRLLQHYQLHSAAVNALSFHPSGNYLITASSDSTLKILDLMEGRLLY 265          
The following BLAST results are available for this feature:
BLAST of CF504010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
KTNB1_HUMAN1.811e-1239.42Katanin p80 WD40-containing subunit B1 OS=Homo sap... [more]
WD51A_HUMAN2.365e-1236.45WD repeat-containing protein 51A OS=Homo sapiens G... [more]
WD51A_BOVIN2.365e-1235.51WD repeat-containing protein 51A OS=Bos taurus GN=... [more]
TAF5_YEAST2.365e-1235.51Transcription initiation factor TFIID subunit 5 OS... [more]
WDR5_DICDI3.088e-1235.09WD repeat-containing protein 5 homolog OS=Dictyost... [more]
WDR48_DROMO3.088e-1239.45WD repeat-containing protein 48 homolog OS=Drosoph... [more]
WDR48_DROAN3.088e-1239.45WD repeat-containing protein 48 homolog OS=Drosoph... [more]
WDR48_DROVI4.033e-1239.45WD repeat-containing protein 48 homolog OS=Drosoph... [more]
WDR48_DROGR4.033e-1239.45WD repeat-containing protein 48 homolog OS=Drosoph... [more]
WD51A_MOUSE4.033e-1234.58WD repeat-containing protein 51A OS=Mus musculus G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-498 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504010 ID=CF504010; Name=CF504010; organism=Citrus sinensis; type=EST; length=351bp
TCTCGATCGACAACCGTCAGATTGTATCGGCCTCTCGTGACCGTACGATC
AAGTTGTGGAACACGCTCGGCGAGTGCAAGTACACGATTCAAGAGGGAGA
CGCTCACACTGAGTGGGTTTCTTGTGTTAGGTTCAGCCCCAACACGCTTC
AGCCCACTATCGTTTCCGCCTCGTGGGACCGTACGGTCAAAGTGTGGAAT
TTGAGCAACTGCAAGCTTAGGGCTACTCTTGCCGGGCACACTGGATACGT
GAACACCGTCGCAGTGTCGCCGGATGGTTCGTTGTGTGCCAGTGGAGGGA
AAGATGGTGTGATTCTGTTGTGGGATTTGGCTGAGGGAAAAAGACTCTAC
T
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