CF504010

Overview
NameCF504010
Unique NameCF504010
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length351
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: KTNB1_CHICK (Katanin p80 WD40-containing subunit B1 OS=Gallus gallus GN=KATNB1 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 4.033e-12
Identity = 42/103 (40.78%), Postives = 56/103 (54.37%), Query Frame = 3
Query:   21 IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 329
            + S S D  IKLW+     K  I +  +HT+ V C+RFSP+     + SA+ D TVK+W+L+  K+     GH+G VN V   P   L ASG  D  I  WDL
Sbjct:  120 VASGSLDTDIKLWDV--RRKGCIFKYKSHTQAVRCLRFSPDG--KWLASAADDHTVKLWDLTAGKVMFEFTGHSGPVNVVEFHPSEYLLASGSSDRTIRFWDL 218          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: APAF_MOUSE (Apoptotic protease-activating factor 1 OS=Mus musculus GN=Apaf1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 4.033e-12
Identity = 38/110 (34.55%), Postives = 62/110 (56.36%), Query Frame = 3
Query:    3 SIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 329
            S D+  I + S D+ +K+W++  G+  +T  E   H+E V+C  F+ ++    + + S D  +K+W+L+  + R T+ GHT  VN    SPD  L AS   DG + LWD+
Sbjct:  666 SSDDSYIATCSADKKVKIWDSATGKLVHTYDE---HSEQVNCCHFTNSSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: COB21_ARATH (Coatomer subunit beta'-1 OS=Arabidopsis thaliana GN=At1g79990 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.268e-12
Identity = 39/107 (36.45%), Postives = 59/107 (55.14%), Query Frame = 3
Query:    9 DNRQIVSASRDRTIKLWNTLG--ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 323
            D     SAS DRTIK+WN LG  +  +T+   DAH + V+CV +     +P +++ S D T KVW+        TL GHT  V+ V+  P+  +  +G +DG + +W
Sbjct:  154 DTNTFASASLDRTIKIWN-LGSPDPNFTL---DAHLKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVSFHPELPIIITGSEDGTVRIW 256          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: YZLL_CAEEL (Uncharacterized WD repeat-containing protein K04G11.4 OS=Caenorhabditis elegans GN=K04G11.4 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.880e-12
Identity = 38/113 (33.63%), Postives = 64/113 (56.64%), Query Frame = 3
Query:    3 SIDNRQIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG 338
            S D++ IVS S D+ +K+++ + G C  T++    HT +V C  F+P+     I S S+D T+++W   N     ++ GH   V++V  + DG+  ASG  DG++ +WD   G
Sbjct:  157 SSDSKLIVSCSDDKLVKVFDVSSGRCVKTLK---GHTNYVFCCCFNPSGT--LIASGSFDETIRIWCARNGNTIFSIPGHEDPVSSVCFNRDGAYLASGSYDGIVRIWDSTTG 264          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: WDR48_DROYA (WD repeat-containing protein 48 homolog OS=Drosophila yakuba GN=GE13034 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.880e-12
Identity = 42/109 (38.53%), Postives = 58/109 (53.21%), Query Frame = 3
Query:    9 DNRQIVSASRDRTIKLWNTLGEC--KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 329
            +N ++ SA RD  I++WNT  +   KY IQ  + H +WV+ +    N     ++SAS D TVKVWN       +TL  H  YV  +A + D    AS G D  I LWD+
Sbjct:   39 NNGKLYSAGRDAIIRVWNTRTDSSEKY-IQSMEHHNDWVNDIVLCCNGRN--LISASCDTTVKVWNAQKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDV 144          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: WDR48_DROSI (WD repeat-containing protein 48 homolog OS=Drosophila simulans GN=GD25924 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.880e-12
Identity = 42/109 (38.53%), Postives = 58/109 (53.21%), Query Frame = 3
Query:    9 DNRQIVSASRDRTIKLWNTLGEC--KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 329
            +N ++ SA RD  I++WNT  +   KY IQ  + H +WV+ +    N     ++SAS D TVKVWN       +TL  H  YV  +A + D    AS G D  I LWD+
Sbjct:   39 NNGKLYSAGRDAIIRVWNTRTDSSEKY-IQSMEHHNDWVNDIVLCCNGRN--LISASCDTTVKVWNAQKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDV 144          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: WDR48_DROSE (WD repeat-containing protein 48 homolog OS=Drosophila sechellia GN=GM20456 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.880e-12
Identity = 42/109 (38.53%), Postives = 58/109 (53.21%), Query Frame = 3
Query:    9 DNRQIVSASRDRTIKLWNTLGEC--KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 329
            +N ++ SA RD  I++WNT  +   KY IQ  + H +WV+ +    N     ++SAS D TVKVWN       +TL  H  YV  +A + D    AS G D  I LWD+
Sbjct:   39 NNGKLYSAGRDAIIRVWNTRTDSSEKY-IQSMEHHNDWVNDIVLCCNGRN--LISASCDTTVKVWNAQKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDV 144          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: WDR48_DROME (WD repeat-containing protein 48 homolog OS=Drosophila melanogaster GN=CG9062 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.880e-12
Identity = 42/109 (38.53%), Postives = 58/109 (53.21%), Query Frame = 3
Query:    9 DNRQIVSASRDRTIKLWNTLGEC--KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 329
            +N ++ SA RD  I++WNT  +   KY IQ  + H +WV+ +    N     ++SAS D TVKVWN       +TL  H  YV  +A + D    AS G D  I LWD+
Sbjct:   39 NNGKLYSAGRDAIIRVWNTRTDSSEKY-IQSMEHHNDWVNDIVLCCNGRN--LISASCDTTVKVWNAQKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDV 144          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: WDR48_DROER (WD repeat-containing protein 48 homolog OS=Drosophila erecta GN=GG22678 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.880e-12
Identity = 42/109 (38.53%), Postives = 58/109 (53.21%), Query Frame = 3
Query:    9 DNRQIVSASRDRTIKLWNTLGEC--KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 329
            +N ++ SA RD  I++WNT  +   KY IQ  + H +WV+ +    N     ++SAS D TVKVWN       +TL  H  YV  +A + D    AS G D  I LWD+
Sbjct:   39 NNGKLYSAGRDAIIRVWNTRTDSSEKY-IQSMEHHNDWVNDIVLCCNGRN--LISASCDTTVKVWNAQKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDV 144          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: TAF5_HUMAN (Transcription initiation factor TFIID subunit 5 OS=Homo sapiens GN=TAF5 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 6.880e-12
Identity = 38/105 (36.19%), Postives = 55/105 (52.38%), Query Frame = 3
Query:   24 VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG 338
            VS   DR  +LW T       I  G  H   V+C RF PN+    + + S DRTV++W++ N        GH G ++++  SP+G   A+G  DG +LLWD+  G
Sbjct:  601 VSGGHDRVARLWATDHYQPLRIFAG--HLADVNCTRFHPNSNY--VATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHG 701          
The following BLAST results are available for this feature:
BLAST of CF504010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
KTNB1_CHICK4.033e-1240.78Katanin p80 WD40-containing subunit B1 OS=Gallus g... [more]
APAF_MOUSE4.033e-1234.55Apoptotic protease-activating factor 1 OS=Mus musc... [more]
COB21_ARATH5.268e-1236.45Coatomer subunit beta'-1 OS=Arabidopsis thaliana G... [more]
YZLL_CAEEL6.880e-1233.63Uncharacterized WD repeat-containing protein K04G1... [more]
WDR48_DROYA6.880e-1238.53WD repeat-containing protein 48 homolog OS=Drosoph... [more]
WDR48_DROSI6.880e-1238.53WD repeat-containing protein 48 homolog OS=Drosoph... [more]
WDR48_DROSE6.880e-1238.53WD repeat-containing protein 48 homolog OS=Drosoph... [more]
WDR48_DROME6.880e-1238.53WD repeat-containing protein 48 homolog OS=Drosoph... [more]
WDR48_DROER6.880e-1238.53WD repeat-containing protein 48 homolog OS=Drosoph... [more]
TAF5_HUMAN6.880e-1236.19Transcription initiation factor TFIID subunit 5 OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-498 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504010 ID=CF504010; Name=CF504010; organism=Citrus sinensis; type=EST; length=351bp
TCTCGATCGACAACCGTCAGATTGTATCGGCCTCTCGTGACCGTACGATC
AAGTTGTGGAACACGCTCGGCGAGTGCAAGTACACGATTCAAGAGGGAGA
CGCTCACACTGAGTGGGTTTCTTGTGTTAGGTTCAGCCCCAACACGCTTC
AGCCCACTATCGTTTCCGCCTCGTGGGACCGTACGGTCAAAGTGTGGAAT
TTGAGCAACTGCAAGCTTAGGGCTACTCTTGCCGGGCACACTGGATACGT
GAACACCGTCGCAGTGTCGCCGGATGGTTCGTTGTGTGCCAGTGGAGGGA
AAGATGGTGTGATTCTGTTGTGGGATTTGGCTGAGGGAAAAAGACTCTAC
T
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