CF504010
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: MET30_YEAST (F-box protein MET30 OS=Saccharomyces cerevisiae GN=MET30 PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 6.880e-12 Identity = 41/108 (37.96%), Postives = 64/108 (59.26%), Query Frame = 3 Query: 9 DNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 329 D+R++++ S D+TI++WN + GEC T + H++ V S ++ Q IVS S D+TVKVW++ + + TL GHT +VN V + P C S D I +WD+ Sbjct: 351 DDRKLITGSLDKTIRVWNYITGECISTYR---GHSDSV----LSVDSYQKVIVSGSADKTVKVWHVES-RTCYTLRGHTEWVNCVKLHPKSFSCFSCSDDTTIRMWDI 450
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: COB22_ARATH (Coatomer subunit beta'-2 OS=Arabidopsis thaliana GN=At1g52360 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 6.880e-12 Identity = 39/107 (36.45%), Postives = 58/107 (54.21%), Query Frame = 3 Query: 9 DNRQIVSASRDRTIKLWNTLG--ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 323 D SAS DRTIK+WN LG + +T+ DAH + V+CV + +P +++ S D T KVW+ TL GHT V+ V P+ + +G +DG + +W Sbjct: 154 DTNTFASASLDRTIKIWN-LGSPDPNFTL---DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIW 256
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: Y163_SYNY3 (Uncharacterized WD repeat-containing protein sll0163 OS=Synechocystis sp. (strain PCC 6803) GN=sll0163 PE=4 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 8.986e-12 Identity = 44/110 (40.00%), Postives = 57/110 (51.82%), Query Frame = 3 Query: 3 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLA 332 S D+R I++AS D T ++W+ LG T+ H V RFSP VSA D T ++W+ S K A L GH G V TV SPDG + + DG LWDL+ Sbjct: 1515 SADSRYILTASVDNTARIWDFLGRPLLTLA---GHQSIVYQARFSPEGNLIATVSA--DHTARLWDRSG-KTVAVLYGHQGLVGTVDWSPDGQMLVTASNDGTARLWDLS 1618 HSP 2 Score: 65.4698 bits (158), Expect = 9.935e-11 Identity = 37/115 (32.17%), Postives = 58/115 (50.43%), Query Frame = 3 Query: 3 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 347 S D + +AS D T+KLW GE T++ H +WV V FSP+ +V++ D T ++WN + +L GH +V + G + + +DG LWDL EG+ + Sbjct: 1064 SADGQYFATASADHTVKLWQRHGEEVATLR---GHEDWVRSVHFSPH--HQFLVTSGQDNTARIWNFAGEQL-TLCQGHADWVRNAEFNCHGQILLTASRDGTARLWDL-EGREI 1171
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: COB23_ARATH (Coatomer subunit beta'-3 OS=Arabidopsis thaliana GN=At3g15980 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 8.986e-12 Identity = 39/107 (36.45%), Postives = 58/107 (54.21%), Query Frame = 3 Query: 9 DNRQIVSASRDRTIKLWNTLG--ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 323 D SAS DRTIK+WN LG + +T+ DAH + V+CV + +P +++ S D T KVW+ TL GHT V+ V P+ + +G +DG + +W Sbjct: 154 DTNTFASASLDRTIKIWN-LGSPDPNFTL---DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIW 256
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: UTP13_SCHPO (Probable U3 small nucleolar RNA-associated protein 13 OS=Schizosaccharomyces pombe GN=utp13 PE=2 SV=3) HSP 1 Score: 68.5514 bits (166), Expect = 1.174e-11 Identity = 40/114 (35.09%), Postives = 62/114 (54.39%), Query Frame = 3 Query: 3 SIDNRQIVSASRDRTIKLWNT-LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK 341 S D R I SAS+D+TIKLW++ GE ++ H V F+P + Q + S S DRT+++WN+ + TL GHTG + + G+ S DG++ +W L+ G+ Sbjct: 474 SKDGRIIASASQDKTIKLWDSSTGEVVGVLR---GHRRGVWACSFNPFSRQ--LASGSGDRTIRIWNVDTQQCVQTLEGHTGAILKLIYISQGTQVVSAAADGLVKVWSLSSGE 582 HSP 2 Score: 65.855 bits (159), Expect = 7.607e-11 Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = 3 Query: 12 NRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 323 +RQ+ S S DRTI++WN + + +Q + HT + + + Q +VSA+ D VKVW+LS+ + ATL H V +A DGSL SGG D V+ +W Sbjct: 519 SRQLASGSGDRTIRIWNV--DTQQCVQTLEGHTGAILKLIYISQGTQ--VVSAAADGLVKVWSLSSGECVATLDNHEDRVWALASRFDGSLLVSGGADAVVSVW 618
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: KTNB1_XENTR (Katanin p80 WD40-containing subunit B1 OS=Xenopus tropicalis GN=katnb1 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.174e-11 Identity = 40/103 (38.83%), Postives = 56/103 (54.37%), Query Frame = 3 Query: 21 IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 329 + S S D IKLW+ K + HT+ V C+RFSP+ + SAS D +VK+W+L+ K+ A L+ H G VN + P+ L ASG D + WDL Sbjct: 120 VASGSLDTNIKLWDV--RRKGCVFRYKGHTQAVRCLRFSPDG--KWLASASDDHSVKLWDLTAGKMMAELSEHKGPVNIIEFHPNEYLLASGSADRTVRFWDL 218
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: KTNB1_XENLA (Katanin p80 WD40-containing subunit B1 OS=Xenopus laevis GN=katnb1 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.174e-11 Identity = 40/103 (38.83%), Postives = 56/103 (54.37%), Query Frame = 3 Query: 21 IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 329 + S S D IKLW+ K + HT+ V C+RFSP+ + SAS D +VK+W+L+ K+ A L+ H G VN + P+ L ASG D + WDL Sbjct: 120 VASGSLDTNIKLWDV--RRKGCVFRYKGHTQAVRCLRFSPDG--KWLASASDDHSVKLWDLTAGKMMAELSEHKGPVNIIEFHPNEYLLASGSADRTVRFWDL 218
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: TAF5_SCHPO (Transcription initiation factor TFIID subunit 5 OS=Schizosaccharomyces pombe GN=taf5 PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.533e-11 Identity = 36/107 (33.64%), Postives = 59/107 (55.14%), Query Frame = 3 Query: 27 SASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 347 +AS D+T +LW+ + Y ++ H V CV F PN+ +++ S D+T ++W++ GHT V VA++PDG AS +G+I LWD+ G+R+ Sbjct: 438 TASHDQTAQLWSC--DHIYPLRVFAGHLSDVDCVTFHPNSAY--VLTGSSDKTCRLWDVHRGHSVRVFNGHTQPVTAVAIAPDGHTMASADSEGLIHLWDIGTGRRI 540
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: TAF5_MOUSE (Transcription initiation factor TFIID subunit 5 OS=Mus musculus GN=Taf5 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.533e-11 Identity = 37/105 (35.24%), Postives = 55/105 (52.38%), Query Frame = 3 Query: 24 VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG 338 VS DR +LW T I G H V+C R+ PN+ + + S DRTV++W++ N GH G ++++ SP+G A+G DG +LLWD+ G Sbjct: 602 VSGGHDRVARLWATDHYQPLRIFAG--HLADVNCTRYHPNSNY--VATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHG 702
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: APAF_RAT (Apoptotic protease-activating factor 1 OS=Rattus norvegicus GN=Apaf1 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.533e-11 Identity = 37/110 (33.64%), Postives = 61/110 (55.45%), Query Frame = 3 Query: 3 SIDNRQIVSASRDRTIKLWNT-LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 329 S D+ I + S D+ +K+W++ G+ +T +E H+E V+C F+ + + + S D +K+W+L+ + R T+ GHT V SPD L AS DG + LWD+ Sbjct: 666 SSDDSYIATCSVDKKVKIWDSGTGKLVHTYEE---HSEQVNCCHFTNKSNHLLLATGSNDSFLKLWDLNQKECRNTMFGHTNSVTHCRFSPDDELLASCSADGTLKLWDV 772 The following BLAST results are available for this feature:
BLAST of CF504010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 109
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF504010 ID=CF504010; Name=CF504010; organism=Citrus sinensis; type=EST; length=351bpback to top |