CF504010

Overview
NameCF504010
Unique NameCF504010
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length351
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: MET30_YEAST (F-box protein MET30 OS=Saccharomyces cerevisiae GN=MET30 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.880e-12
Identity = 41/108 (37.96%), Postives = 64/108 (59.26%), Query Frame = 3
Query:    9 DNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 329
            D+R++++ S D+TI++WN + GEC  T +    H++ V     S ++ Q  IVS S D+TVKVW++ + +   TL GHT +VN V + P    C S   D  I +WD+
Sbjct:  351 DDRKLITGSLDKTIRVWNYITGECISTYR---GHSDSV----LSVDSYQKVIVSGSADKTVKVWHVES-RTCYTLRGHTEWVNCVKLHPKSFSCFSCSDDTTIRMWDI 450          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: COB22_ARATH (Coatomer subunit beta'-2 OS=Arabidopsis thaliana GN=At1g52360 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.880e-12
Identity = 39/107 (36.45%), Postives = 58/107 (54.21%), Query Frame = 3
Query:    9 DNRQIVSASRDRTIKLWNTLG--ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 323
            D     SAS DRTIK+WN LG  +  +T+   DAH + V+CV +     +P +++ S D T KVW+        TL GHT  V+ V   P+  +  +G +DG + +W
Sbjct:  154 DTNTFASASLDRTIKIWN-LGSPDPNFTL---DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIW 256          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: Y163_SYNY3 (Uncharacterized WD repeat-containing protein sll0163 OS=Synechocystis sp. (strain PCC 6803) GN=sll0163 PE=4 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.986e-12
Identity = 44/110 (40.00%), Postives = 57/110 (51.82%), Query Frame = 3
Query:    3 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLA 332
            S D+R I++AS D T ++W+ LG    T+     H   V   RFSP       VSA  D T ++W+ S  K  A L GH G V TV  SPDG +  +   DG   LWDL+
Sbjct: 1515 SADSRYILTASVDNTARIWDFLGRPLLTLA---GHQSIVYQARFSPEGNLIATVSA--DHTARLWDRSG-KTVAVLYGHQGLVGTVDWSPDGQMLVTASNDGTARLWDLS 1618          

HSP 2 Score: 65.4698 bits (158), Expect = 9.935e-11
Identity = 37/115 (32.17%), Postives = 58/115 (50.43%), Query Frame = 3
Query:    3 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 347
            S D +   +AS D T+KLW   GE   T++    H +WV  V FSP+     +V++  D T ++WN +  +L     GH  +V     +  G +  +  +DG   LWDL EG+ +
Sbjct: 1064 SADGQYFATASADHTVKLWQRHGEEVATLR---GHEDWVRSVHFSPH--HQFLVTSGQDNTARIWNFAGEQL-TLCQGHADWVRNAEFNCHGQILLTASRDGTARLWDL-EGREI 1171          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: COB23_ARATH (Coatomer subunit beta'-3 OS=Arabidopsis thaliana GN=At3g15980 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.986e-12
Identity = 39/107 (36.45%), Postives = 58/107 (54.21%), Query Frame = 3
Query:    9 DNRQIVSASRDRTIKLWNTLG--ECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 323
            D     SAS DRTIK+WN LG  +  +T+   DAH + V+CV +     +P +++ S D T KVW+        TL GHT  V+ V   P+  +  +G +DG + +W
Sbjct:  154 DTNTFASASLDRTIKIWN-LGSPDPNFTL---DAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIW 256          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: UTP13_SCHPO (Probable U3 small nucleolar RNA-associated protein 13 OS=Schizosaccharomyces pombe GN=utp13 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 1.174e-11
Identity = 40/114 (35.09%), Postives = 62/114 (54.39%), Query Frame = 3
Query:    3 SIDNRQIVSASRDRTIKLWNT-LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK 341
            S D R I SAS+D+TIKLW++  GE    ++    H   V    F+P + Q  + S S DRT+++WN+   +   TL GHTG +  +     G+   S   DG++ +W L+ G+
Sbjct:  474 SKDGRIIASASQDKTIKLWDSSTGEVVGVLR---GHRRGVWACSFNPFSRQ--LASGSGDRTIRIWNVDTQQCVQTLEGHTGAILKLIYISQGTQVVSAAADGLVKVWSLSSGE 582          

HSP 2 Score: 65.855 bits (159), Expect = 7.607e-11
Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = 3
Query:   12 NRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 323
            +RQ+ S S DRTI++WN   + +  +Q  + HT  +  + +     Q  +VSA+ D  VKVW+LS+ +  ATL  H   V  +A   DGSL  SGG D V+ +W
Sbjct:  519 SRQLASGSGDRTIRIWNV--DTQQCVQTLEGHTGAILKLIYISQGTQ--VVSAAADGLVKVWSLSSGECVATLDNHEDRVWALASRFDGSLLVSGGADAVVSVW 618          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: KTNB1_XENTR (Katanin p80 WD40-containing subunit B1 OS=Xenopus tropicalis GN=katnb1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.174e-11
Identity = 40/103 (38.83%), Postives = 56/103 (54.37%), Query Frame = 3
Query:   21 IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 329
            + S S D  IKLW+     K  +     HT+ V C+RFSP+     + SAS D +VK+W+L+  K+ A L+ H G VN +   P+  L ASG  D  +  WDL
Sbjct:  120 VASGSLDTNIKLWDV--RRKGCVFRYKGHTQAVRCLRFSPDG--KWLASASDDHSVKLWDLTAGKMMAELSEHKGPVNIIEFHPNEYLLASGSADRTVRFWDL 218          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: KTNB1_XENLA (Katanin p80 WD40-containing subunit B1 OS=Xenopus laevis GN=katnb1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.174e-11
Identity = 40/103 (38.83%), Postives = 56/103 (54.37%), Query Frame = 3
Query:   21 IVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 329
            + S S D  IKLW+     K  +     HT+ V C+RFSP+     + SAS D +VK+W+L+  K+ A L+ H G VN +   P+  L ASG  D  +  WDL
Sbjct:  120 VASGSLDTNIKLWDV--RRKGCVFRYKGHTQAVRCLRFSPDG--KWLASASDDHSVKLWDLTAGKMMAELSEHKGPVNIIEFHPNEYLLASGSADRTVRFWDL 218          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: TAF5_SCHPO (Transcription initiation factor TFIID subunit 5 OS=Schizosaccharomyces pombe GN=taf5 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.533e-11
Identity = 36/107 (33.64%), Postives = 59/107 (55.14%), Query Frame = 3
Query:   27 SASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 347
            +AS D+T +LW+   +  Y ++    H   V CV F PN+    +++ S D+T ++W++          GHT  V  VA++PDG   AS   +G+I LWD+  G+R+
Sbjct:  438 TASHDQTAQLWSC--DHIYPLRVFAGHLSDVDCVTFHPNSAY--VLTGSSDKTCRLWDVHRGHSVRVFNGHTQPVTAVAIAPDGHTMASADSEGLIHLWDIGTGRRI 540          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: TAF5_MOUSE (Transcription initiation factor TFIID subunit 5 OS=Mus musculus GN=Taf5 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.533e-11
Identity = 37/105 (35.24%), Postives = 55/105 (52.38%), Query Frame = 3
Query:   24 VSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG 338
            VS   DR  +LW T       I  G  H   V+C R+ PN+    + + S DRTV++W++ N        GH G ++++  SP+G   A+G  DG +LLWD+  G
Sbjct:  602 VSGGHDRVARLWATDHYQPLRIFAG--HLADVNCTRYHPNSNY--VATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHG 702          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: APAF_RAT (Apoptotic protease-activating factor 1 OS=Rattus norvegicus GN=Apaf1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.533e-11
Identity = 37/110 (33.64%), Postives = 61/110 (55.45%), Query Frame = 3
Query:    3 SIDNRQIVSASRDRTIKLWNT-LGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 329
            S D+  I + S D+ +K+W++  G+  +T +E   H+E V+C  F+  +    + + S D  +K+W+L+  + R T+ GHT  V     SPD  L AS   DG + LWD+
Sbjct:  666 SSDDSYIATCSVDKKVKIWDSGTGKLVHTYEE---HSEQVNCCHFTNKSNHLLLATGSNDSFLKLWDLNQKECRNTMFGHTNSVTHCRFSPDDELLASCSADGTLKLWDV 772          
The following BLAST results are available for this feature:
BLAST of CF504010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
MET30_YEAST6.880e-1237.96F-box protein MET30 OS=Saccharomyces cerevisiae GN... [more]
COB22_ARATH6.880e-1236.45Coatomer subunit beta'-2 OS=Arabidopsis thaliana G... [more]
Y163_SYNY38.986e-1240.00Uncharacterized WD repeat-containing protein sll01... [more]
COB23_ARATH8.986e-1236.45Coatomer subunit beta'-3 OS=Arabidopsis thaliana G... [more]
UTP13_SCHPO1.174e-1135.09Probable U3 small nucleolar RNA-associated protein... [more]
KTNB1_XENTR1.174e-1138.83Katanin p80 WD40-containing subunit B1 OS=Xenopus ... [more]
KTNB1_XENLA1.174e-1138.83Katanin p80 WD40-containing subunit B1 OS=Xenopus ... [more]
TAF5_SCHPO1.533e-1133.64Transcription initiation factor TFIID subunit 5 OS... [more]
TAF5_MOUSE1.533e-1135.24Transcription initiation factor TFIID subunit 5 OS... [more]
APAF_RAT1.533e-1133.64Apoptotic protease-activating factor 1 OS=Rattus n... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-498 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504010 ID=CF504010; Name=CF504010; organism=Citrus sinensis; type=EST; length=351bp
TCTCGATCGACAACCGTCAGATTGTATCGGCCTCTCGTGACCGTACGATC
AAGTTGTGGAACACGCTCGGCGAGTGCAAGTACACGATTCAAGAGGGAGA
CGCTCACACTGAGTGGGTTTCTTGTGTTAGGTTCAGCCCCAACACGCTTC
AGCCCACTATCGTTTCCGCCTCGTGGGACCGTACGGTCAAAGTGTGGAAT
TTGAGCAACTGCAAGCTTAGGGCTACTCTTGCCGGGCACACTGGATACGT
GAACACCGTCGCAGTGTCGCCGGATGGTTCGTTGTGTGCCAGTGGAGGGA
AAGATGGTGTGATTCTGTTGTGGGATTTGGCTGAGGGAAAAAGACTCTAC
T
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