CF504010
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: COPB2_PONAB (Coatomer subunit beta' OS=Pongo abelii GN=COPB2 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 2.002e-11 Identity = 35/105 (33.33%), Postives = 54/105 (51.43%), Query Frame = 3 Query: 9 DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 323 DN Q SAS DRTIK+W EG H + V+C+ + +P ++S + DR VK+W+ N TL GH V+ + P+ + +G +DG + +W Sbjct: 154 DNNQFASASLDRTIKVWQLGSSSPNFTLEG--HEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVRIW 256
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: COPB2_MOUSE (Coatomer subunit beta' OS=Mus musculus GN=Copb2 PE=2 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 2.002e-11 Identity = 35/105 (33.33%), Postives = 54/105 (51.43%), Query Frame = 3 Query: 9 DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 323 DN Q SAS DRTIK+W EG H + V+C+ + +P ++S + DR VK+W+ N TL GH V+ + P+ + +G +DG + +W Sbjct: 154 DNNQFASASLDRTIKVWQLGSSSPNFTLEG--HEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVRIW 256
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: COPB2_MACFA (Coatomer subunit beta' OS=Macaca fascicularis GN=COPB2 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 2.002e-11 Identity = 35/105 (33.33%), Postives = 54/105 (51.43%), Query Frame = 3 Query: 9 DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 323 DN Q SAS DRTIK+W EG H + V+C+ + +P ++S + DR VK+W+ N TL GH V+ + P+ + +G +DG + +W Sbjct: 154 DNNQFASASLDRTIKVWQLGSSSPNFTLEG--HEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVRIW 256
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: COPB2_HUMAN (Coatomer subunit beta' OS=Homo sapiens GN=COPB2 PE=1 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 2.002e-11 Identity = 35/105 (33.33%), Postives = 54/105 (51.43%), Query Frame = 3 Query: 9 DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 323 DN Q SAS DRTIK+W EG H + V+C+ + +P ++S + DR VK+W+ N TL GH V+ + P+ + +G +DG + +W Sbjct: 154 DNNQFASASLDRTIKVWQLGSSSPNFTLEG--HEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVRIW 256
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: COPB2_BOVIN (Coatomer subunit beta' OS=Bos taurus GN=COPB2 PE=1 SV=3) HSP 1 Score: 67.781 bits (164), Expect = 2.002e-11 Identity = 35/105 (33.33%), Postives = 54/105 (51.43%), Query Frame = 3 Query: 9 DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 323 DN Q SAS DRTIK+W EG H + V+C+ + +P ++S + DR VK+W+ N TL GH V+ + P+ + +G +DG + +W Sbjct: 154 DNNQFASASLDRTIKVWQLGSSSPNFTLEG--HEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVRIW 256
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: TAF5L_HUMAN (TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Homo sapiens GN=TAF5L PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.614e-11 Identity = 38/104 (36.54%), Postives = 56/104 (53.85%), Query Frame = 3 Query: 27 SASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG 338 S S DRT +LW+ + Y ++ H V CV+F PN+ + + S D+TV++W+ GH G V ++A SP+G AS G+D + LWDLA G Sbjct: 401 SGSHDRTARLWSF--DRTYPLRIYAGHLADVDCVKFHPNSNY--LATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASG 500
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: TUP1_CANAL (Transcriptional repressor TUP1 OS=Candida albicans GN=TUP1 PE=4 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 3.415e-11 Identity = 46/127 (36.22%), Postives = 65/127 (51.18%), Query Frame = 3 Query: 3 SIDNRQIVSASRDRTIKLWN-TLGECKYTI----QEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL-------SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 347 S D + I + S DRT+++W+ T G + + G+ H + V V FS N Q I S S DRTVK+W+L S C++ T GH +V +V +PD SG KD ++ WD A G L Sbjct: 349 SPDGKLIAAGSLDRTVRVWDSTTGFLVERLDSGNENGNGHEDSVYSVAFSNNGEQ--IASGSLDRTVKLWHLEGKSDKKSTCEV--TYIGHKDFVLSVCCTPDNEYILSGSKDRGVIFWDQASGNPL 471
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: KTNB1_DANRE (Katanin p80 WD40-containing subunit B1 OS=Danio rerio GN=katnb1 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 3.415e-11 Identity = 39/101 (38.61%), Postives = 57/101 (56.44%), Query Frame = 3 Query: 3 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKD 305 S D + + SAS D T+KLW+ + T E +HT V+ V+F PN + + S S DRTVK+W+L + + G TG V +V +PDGS SG ++ Sbjct: 156 SPDGKWLASASDDSTVKLWDLIAGKMIT--EFTSHTSAVNVVQFHPN--EYLLASGSADRTVKLWDLEKFNMIGSSEGETGVVRSVLFNPDGSCLYSGSEN 252
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: SPG16_MOUSE (Sperm-associated antigen 16 protein OS=Mus musculus GN=Spag16 PE=1 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.460e-11 Identity = 39/109 (35.78%), Postives = 59/109 (54.13%), Query Frame = 3 Query: 18 QIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK 341 ++ ++S D TIKLW+ GEC T+ EG H W SC S + SAS D T K+W++++ + R TL GHT VN++ P ++ + D + +WD GK Sbjct: 416 KLATSSGDSTIKLWDLNKGECTLTL-EGHNHAVW-SCTWHSCGDF---VASASLDMTSKIWDVNSERCRYTLYGHTDSVNSIEFFPFSNILLTASADKTLSVWDARTGK 519
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: SMU1_DANRE (WD40 repeat-containing protein SMU1 OS=Danio rerio GN=smu1 PE=2 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.460e-11 Identity = 34/110 (30.91%), Postives = 62/110 (56.36%), Query Frame = 3 Query: 3 SIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 329 S D + + ++D IK+W G+C + AH++ V+C+ FS ++ Q I+SAS+D+T+++ L + K GH+ +VN ++PDG S DG + +W++ Sbjct: 273 SRDTEMLATGAQDGKIKVWKIQSGQCLRRYER--AHSKGVTCLSFSKDSTQ--ILSASFDQTIRIHGLKSGKCLKEFRGHSSFVNEATLTPDGHHAISASSDGTVKVWNM 378 The following BLAST results are available for this feature:
BLAST of CF504010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 109
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504010 ID=CF504010; Name=CF504010; organism=Citrus sinensis; type=EST; length=351bpback to top |