CF504010

Overview
NameCF504010
Unique NameCF504010
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length351
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: COPB2_PONAB (Coatomer subunit beta' OS=Pongo abelii GN=COPB2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.002e-11
Identity = 35/105 (33.33%), Postives = 54/105 (51.43%), Query Frame = 3
Query:    9 DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 323
            DN Q  SAS DRTIK+W           EG  H + V+C+ +     +P ++S + DR VK+W+  N     TL GH   V+  +  P+  +  +G +DG + +W
Sbjct:  154 DNNQFASASLDRTIKVWQLGSSSPNFTLEG--HEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVRIW 256          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: COPB2_MOUSE (Coatomer subunit beta' OS=Mus musculus GN=Copb2 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 2.002e-11
Identity = 35/105 (33.33%), Postives = 54/105 (51.43%), Query Frame = 3
Query:    9 DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 323
            DN Q  SAS DRTIK+W           EG  H + V+C+ +     +P ++S + DR VK+W+  N     TL GH   V+  +  P+  +  +G +DG + +W
Sbjct:  154 DNNQFASASLDRTIKVWQLGSSSPNFTLEG--HEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVRIW 256          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: COPB2_MACFA (Coatomer subunit beta' OS=Macaca fascicularis GN=COPB2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.002e-11
Identity = 35/105 (33.33%), Postives = 54/105 (51.43%), Query Frame = 3
Query:    9 DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 323
            DN Q  SAS DRTIK+W           EG  H + V+C+ +     +P ++S + DR VK+W+  N     TL GH   V+  +  P+  +  +G +DG + +W
Sbjct:  154 DNNQFASASLDRTIKVWQLGSSSPNFTLEG--HEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVRIW 256          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: COPB2_HUMAN (Coatomer subunit beta' OS=Homo sapiens GN=COPB2 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 2.002e-11
Identity = 35/105 (33.33%), Postives = 54/105 (51.43%), Query Frame = 3
Query:    9 DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 323
            DN Q  SAS DRTIK+W           EG  H + V+C+ +     +P ++S + DR VK+W+  N     TL GH   V+  +  P+  +  +G +DG + +W
Sbjct:  154 DNNQFASASLDRTIKVWQLGSSSPNFTLEG--HEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVRIW 256          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: COPB2_BOVIN (Coatomer subunit beta' OS=Bos taurus GN=COPB2 PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 2.002e-11
Identity = 35/105 (33.33%), Postives = 54/105 (51.43%), Query Frame = 3
Query:    9 DNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLW 323
            DN Q  SAS DRTIK+W           EG  H + V+C+ +     +P ++S + DR VK+W+  N     TL GH   V+  +  P+  +  +G +DG + +W
Sbjct:  154 DNNQFASASLDRTIKVWQLGSSSPNFTLEG--HEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVRIW 256          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: TAF5L_HUMAN (TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Homo sapiens GN=TAF5L PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.614e-11
Identity = 38/104 (36.54%), Postives = 56/104 (53.85%), Query Frame = 3
Query:   27 SASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEG 338
            S S DRT +LW+   +  Y ++    H   V CV+F PN+    + + S D+TV++W+           GH G V ++A SP+G   AS G+D  + LWDLA G
Sbjct:  401 SGSHDRTARLWSF--DRTYPLRIYAGHLADVDCVKFHPNSNY--LATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASG 500          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: TUP1_CANAL (Transcriptional repressor TUP1 OS=Candida albicans GN=TUP1 PE=4 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.415e-11
Identity = 46/127 (36.22%), Postives = 65/127 (51.18%), Query Frame = 3
Query:    3 SIDNRQIVSASRDRTIKLWN-TLGECKYTI----QEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL-------SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL 347
            S D + I + S DRT+++W+ T G     +    + G+ H + V  V FS N  Q  I S S DRTVK+W+L       S C++  T  GH  +V +V  +PD     SG KD  ++ WD A G  L
Sbjct:  349 SPDGKLIAAGSLDRTVRVWDSTTGFLVERLDSGNENGNGHEDSVYSVAFSNNGEQ--IASGSLDRTVKLWHLEGKSDKKSTCEV--TYIGHKDFVLSVCCTPDNEYILSGSKDRGVIFWDQASGNPL 471          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: KTNB1_DANRE (Katanin p80 WD40-containing subunit B1 OS=Danio rerio GN=katnb1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.415e-11
Identity = 39/101 (38.61%), Postives = 57/101 (56.44%), Query Frame = 3
Query:    3 SIDNRQIVSASRDRTIKLWNTLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKD 305
            S D + + SAS D T+KLW+ +     T  E  +HT  V+ V+F PN  +  + S S DRTVK+W+L    +  +  G TG V +V  +PDGS   SG ++
Sbjct:  156 SPDGKWLASASDDSTVKLWDLIAGKMIT--EFTSHTSAVNVVQFHPN--EYLLASGSADRTVKLWDLEKFNMIGSSEGETGVVRSVLFNPDGSCLYSGSEN 252          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: SPG16_MOUSE (Sperm-associated antigen 16 protein OS=Mus musculus GN=Spag16 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.460e-11
Identity = 39/109 (35.78%), Postives = 59/109 (54.13%), Query Frame = 3
Query:   18 QIVSASRDRTIKLWN-TLGECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK 341
            ++ ++S D TIKLW+   GEC  T+ EG  H  W SC   S       + SAS D T K+W++++ + R TL GHT  VN++   P  ++  +   D  + +WD   GK
Sbjct:  416 KLATSSGDSTIKLWDLNKGECTLTL-EGHNHAVW-SCTWHSCGDF---VASASLDMTSKIWDVNSERCRYTLYGHTDSVNSIEFFPFSNILLTASADKTLSVWDARTGK 519          
BLAST of CF504010 vs. ExPASy Swiss-Prot
Match: SMU1_DANRE (WD40 repeat-containing protein SMU1 OS=Danio rerio GN=smu1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.460e-11
Identity = 34/110 (30.91%), Postives = 62/110 (56.36%), Query Frame = 3
Query:    3 SIDNRQIVSASRDRTIKLWNTL-GECKYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDL 329
            S D   + + ++D  IK+W    G+C    +   AH++ V+C+ FS ++ Q  I+SAS+D+T+++  L + K      GH+ +VN   ++PDG    S   DG + +W++
Sbjct:  273 SRDTEMLATGAQDGKIKVWKIQSGQCLRRYER--AHSKGVTCLSFSKDSTQ--ILSASFDQTIRIHGLKSGKCLKEFRGHSSFVNEATLTPDGHHAISASSDGTVKVWNM 378          
The following BLAST results are available for this feature:
BLAST of CF504010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
COPB2_PONAB2.002e-1133.33Coatomer subunit beta' OS=Pongo abelii GN=COPB2 PE... [more]
COPB2_MOUSE2.002e-1133.33Coatomer subunit beta' OS=Mus musculus GN=Copb2 PE... [more]
COPB2_MACFA2.002e-1133.33Coatomer subunit beta' OS=Macaca fascicularis GN=C... [more]
COPB2_HUMAN2.002e-1133.33Coatomer subunit beta' OS=Homo sapiens GN=COPB2 PE... [more]
COPB2_BOVIN2.002e-1133.33Coatomer subunit beta' OS=Bos taurus GN=COPB2 PE=1... [more]
TAF5L_HUMAN2.614e-1136.54TAF5-like RNA polymerase II p300/CBP-associated fa... [more]
TUP1_CANAL3.415e-1136.22Transcriptional repressor TUP1 OS=Candida albicans... [more]
KTNB1_DANRE3.415e-1138.61Katanin p80 WD40-containing subunit B1 OS=Danio re... [more]
SPG16_MOUSE4.460e-1135.78Sperm-associated antigen 16 protein OS=Mus musculu... [more]
SMU1_DANRE4.460e-1130.91WD40 repeat-containing protein SMU1 OS=Danio rerio... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-498 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504010 ID=CF504010; Name=CF504010; organism=Citrus sinensis; type=EST; length=351bp
TCTCGATCGACAACCGTCAGATTGTATCGGCCTCTCGTGACCGTACGATC
AAGTTGTGGAACACGCTCGGCGAGTGCAAGTACACGATTCAAGAGGGAGA
CGCTCACACTGAGTGGGTTTCTTGTGTTAGGTTCAGCCCCAACACGCTTC
AGCCCACTATCGTTTCCGCCTCGTGGGACCGTACGGTCAAAGTGTGGAAT
TTGAGCAACTGCAAGCTTAGGGCTACTCTTGCCGGGCACACTGGATACGT
GAACACCGTCGCAGTGTCGCCGGATGGTTCGTTGTGTGCCAGTGGAGGGA
AAGATGGTGTGATTCTGTTGTGGGATTTGGCTGAGGGAAAAAGACTCTAC
T
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