CF504016

Overview
NameCF504016
Unique NameCF504016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length323
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_YERPG (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis bv. Antiqua (strain Angola) GN=arnA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.789e-13
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 3
Query:  105 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ED S  I G I KQRW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D
Sbjct:  446 EDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFRPFNWMGPRLD 499          
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_YERPE (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis GN=arnA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.789e-13
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 3
Query:  105 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ED S  I G I KQRW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D
Sbjct:  446 EDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFRPFNWMGPRLD 499          
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_YERPB (Bifunctional polymyxin resistance protein arnA OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=arnA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.789e-13
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 3
Query:  105 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ED S  I G I KQRW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D
Sbjct:  446 EDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFRPFNWMGPRLD 499          
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_YERPA (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=arnA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.789e-13
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 3
Query:  105 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ED S  I G I KQRW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D
Sbjct:  446 EDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFRPFNWMGPRLD 499          
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_YERP3 (Bifunctional polymyxin resistance protein arnA OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=arnA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.789e-13
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 3
Query:  105 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ED S  I G I KQRW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D
Sbjct:  446 EDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFTLFRPFNWMGPRLD 499          
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_ENT38 (Bifunctional polymyxin resistance protein arnA OS=Enterobacter sp. (strain 638) GN=arnA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.789e-13
Identity = 38/82 (46.34%), Postives = 50/82 (60.98%), Query Frame = 3
Query:   21 CEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            C  Y K I    P  S +    +  V  ED S  I G I KQRW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D
Sbjct:  420 CVKYQKRI--IFPSTSEVYGMCSDKVFDEDHSNLIVGPINKQRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD 499          
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_YERE8 (Bifunctional polymyxin resistance protein arnA OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=arnA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.643e-13
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 3
Query:  105 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ED+S  I G I KQRW Y+ +KQL++R+I+A GA+  L+FT+ RPFNW+GPR+D
Sbjct:  446 EDSSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKENLKFTLFRPFNWMGPRLD 499          
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_SHESH (Bifunctional polymyxin resistance protein arnA OS=Shewanella sediminis (strain HAW-EB3) GN=arnA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.643e-13
Identity = 30/54 (55.56%), Postives = 43/54 (79.63%), Query Frame = 3
Query:  105 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ED SP I G I +QRW Y+ +KQL++R+I+A G ++ L+FT+ RPFNW+GPR+D
Sbjct:  448 EDTSPLITGPINRQRWIYSTSKQLLDRVIWAYGKKDNLKFTLFRPFNWMGPRLD 501          
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_ERWT9 (Bifunctional polymyxin resistance protein arnA OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=arnA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.643e-13
Identity = 40/89 (44.94%), Postives = 53/89 (59.55%), Query Frame = 3
Query:    3 LIHFSTCEVYGK-TIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            +I  ST EVYG  T  SF                 ED+S  + G I KQRW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D
Sbjct:  427 IIFPSTSEVYGMCTDASF----------------DEDSSNLVVGPINKQRWIYSVSKQLLDRVIWAYGDKEGLRFTLFRPFNWMGPRLD 499          
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_AERHH (Bifunctional polymyxin resistance protein arnA OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=arnA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.643e-13
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 3
Query:  105 EDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ED+S  I G I KQRW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D
Sbjct:  448 EDSSRLIVGPINKQRWIYSVSKQLLDRVIWAYGKKEGLNFTLFRPFNWMGPRLD 501          
The following BLAST results are available for this feature:
BLAST of CF504016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ARNA_YERPG2.789e-1357.41Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPE2.789e-1357.41Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPB2.789e-1357.41Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPA2.789e-1357.41Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERP32.789e-1357.41Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ENT382.789e-1346.34Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERE83.643e-1357.41Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SHESH3.643e-1355.56Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ERWT93.643e-1344.94Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_AERHH3.643e-1357.41Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-504 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504016 ID=CF504016; Name=CF504016; organism=Citrus sinensis; type=EST; length=323bp
GTTTGATTCACTTCTCTACTTGTGAAGTATATGGAAAGACCATTGGAAGC
TTTCTTCCTAAAGATAGTCCTCTTCGGCAGGATCCTGCTTACTATGTTCT
TAAAGAAGATGCCTCCCCCTGCATTTTTGGCTCTATTGAGAAGCAGAGGT
GGTCGTATGCATGTGCAAAGCAATTGATTGAAAGGCTGATTTATGCTGAG
GGTGCAGAGAATGGTCTTGAGTTCACCATTGTGAGGCCCTTTAACTGGAT
TGGTCCGAGGATGGACTTCATTCCCGGCATTGATGGTCCAAGTGAGGGTG
TTCCAAGGGTTCTGGCATGCTTT
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