CF504016

Overview
NameCF504016
Unique NameCF504016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length323
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_SALPC (Bifunctional polymyxin resistance protein arnA OS=Salmonella paratyphi C (strain RKS4594) GN=arnA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.084e-12
Identity = 38/85 (44.71%), Postives = 49/85 (57.65%), Query Frame = 3 
Query:   15 STCEVYGK-TIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ST EVYG  T  SF                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D
Sbjct:  431 STSEVYGMCTDASF----------------DEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD 499
[Close]
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_SALPB (Bifunctional polymyxin resistance protein arnA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=arnA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.084e-12
Identity = 38/85 (44.71%), Postives = 49/85 (57.65%), Query Frame = 3 
Query:   15 STCEVYGK-TIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ST EVYG  T  SF                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D
Sbjct:  431 STSEVYGMCTDASF----------------DEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD 499
[Close]
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_SALPA (Bifunctional polymyxin resistance protein arnA OS=Salmonella paratyphi A GN=arnA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.084e-12
Identity = 38/85 (44.71%), Postives = 49/85 (57.65%), Query Frame = 3 
Query:   15 STCEVYGK-TIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ST EVYG  T  SF                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D
Sbjct:  431 STSEVYGMCTDASF----------------DEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD 499
[Close]
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_SALNS (Bifunctional polymyxin resistance protein arnA OS=Salmonella newport (strain SL254) GN=arnA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.084e-12
Identity = 38/85 (44.71%), Postives = 49/85 (57.65%), Query Frame = 3 
Query:   15 STCEVYGK-TIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ST EVYG  T  SF                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D
Sbjct:  431 STSEVYGMCTDASF----------------DEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD 499
[Close]
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_SALHS (Bifunctional polymyxin resistance protein arnA OS=Salmonella heidelberg (strain SL476) GN=arnA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.084e-12
Identity = 38/85 (44.71%), Postives = 49/85 (57.65%), Query Frame = 3 
Query:   15 STCEVYGK-TIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ST EVYG  T  SF                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D
Sbjct:  431 STSEVYGMCTDASF----------------DEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD 499
[Close]
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_SALG2 (Bifunctional polymyxin resistance protein arnA OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=arnA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.084e-12
Identity = 38/85 (44.71%), Postives = 49/85 (57.65%), Query Frame = 3 
Query:   15 STCEVYGK-TIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ST EVYG  T  SF                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D
Sbjct:  431 STSEVYGMCTDASF----------------DEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD 499
[Close]
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_SALEP (Bifunctional polymyxin resistance protein arnA OS=Salmonella enteritidis PT4 (strain P125109) GN=arnA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.084e-12
Identity = 38/85 (44.71%), Postives = 49/85 (57.65%), Query Frame = 3 
Query:   15 STCEVYGK-TIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ST EVYG  T  SF                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D
Sbjct:  431 STSEVYGMCTDASF----------------DEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD 499
[Close]
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_SALDC (Bifunctional polymyxin resistance protein arnA OS=Salmonella dublin (strain CT_02021853) GN=arnA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.084e-12
Identity = 38/85 (44.71%), Postives = 49/85 (57.65%), Query Frame = 3 
Query:   15 STCEVYGK-TIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ST EVYG  T  SF                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D
Sbjct:  431 STSEVYGMCTDASF----------------DEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD 499
[Close]
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_SALCH (Bifunctional polymyxin resistance protein arnA OS=Salmonella choleraesuis GN=arnA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.084e-12
Identity = 38/85 (44.71%), Postives = 49/85 (57.65%), Query Frame = 3 
Query:   15 STCEVYGK-TIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ST EVYG  T  SF                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D
Sbjct:  431 STSEVYGMCTDASF----------------DEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD 499
[Close]
BLAST of CF504016 vs. ExPASy Swiss-Prot
Match: ARNA_SALA4 (Bifunctional polymyxin resistance protein arnA OS=Salmonella agona (strain SL483) GN=arnA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.084e-12
Identity = 38/85 (44.71%), Postives = 49/85 (57.65%), Query Frame = 3 
Query:   15 STCEVYGK-TIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 266
            ST EVYG  T  SF                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL FT+ RPFNW+GPR+D
Sbjct:  431 STSEVYGMCTDASF----------------DEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLD 499
The following BLAST results are available for this feature:
BLAST of CF504016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ARNA_SALPC3.084e-1244.71Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALPB3.084e-1244.71Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALPA3.084e-1244.71Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALNS3.084e-1244.71Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALHS3.084e-1244.71Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALG23.084e-1244.71Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALEP3.084e-1244.71Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALDC3.084e-1244.71Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALCH3.084e-1244.71Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALA43.084e-1244.71Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-504 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504016 ID=CF504016; Name=CF504016; organism=Citrus sinensis; type=EST; length=323bp
GTTTGATTCACTTCTCTACTTGTGAAGTATATGGAAAGACCATTGGAAGC
TTTCTTCCTAAAGATAGTCCTCTTCGGCAGGATCCTGCTTACTATGTTCT
TAAAGAAGATGCCTCCCCCTGCATTTTTGGCTCTATTGAGAAGCAGAGGT
GGTCGTATGCATGTGCAAAGCAATTGATTGAAAGGCTGATTTATGCTGAG
GGTGCAGAGAATGGTCTTGAGTTCACCATTGTGAGGCCCTTTAACTGGAT
TGGTCCGAGGATGGACTTCATTCCCGGCATTGATGGTCCAAGTGAGGGTG
TTCCAAGGGTTCTGGCATGCTTT
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