CF504019

Overview
NameCF504019
Unique NameCF504019
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UBE2Z_HUMAN (Ubiquitin-conjugating enzyme E2 Z OS=Homo sapiens GN=UBE2Z PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 5.425e-18
Identity = 52/120 (43.33%), Postives = 65/120 (54.17%), Query Frame = 3
Query:  129 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAF-----RTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNP 461
            RI +++  + K+PP      P   DM    A I GP D+PY GG FL     PPDYP  PP+V        T  F+PN   NG +CL IL       WSPA +IS VL+SI SL+T+ NP
Sbjct:  103 RIKRDIMSIYKEPPPGMFVVPDTVDMTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMTE-NP 221          
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UBE2Z_DANRE (Ubiquitin-conjugating enzyme E2 Z OS=Danio rerio GN=ube2z PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 5.425e-18
Identity = 52/120 (43.33%), Postives = 65/120 (54.17%), Query Frame = 3
Query:  129 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKV-----AFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNP 461
            RI +++  + K+PP      P   DM    A I GP D+PY GG FL     PPDYP  PP+V        T  F+PN   NG +CL IL       WSPA +IS VL+SI SL+T+ NP
Sbjct:   75 RIKRDIMSIYKEPPPGMFVVPDPHDMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLITTGHNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMTE-NP 193          
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UBC4_WHEAT (Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum GN=UBC4 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.425e-18
Identity = 44/132 (33.33%), Postives = 69/132 (52.27%), Query Frame = 3
Query:  150 DLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVL-LSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSW 539
            DL K   +      + + M  +     GP DS Y GGV+ V +     YP+K P + F  K++HPN++  +GS+CLD++ + WSP   +  +  + +  LL  PNP DPL  E A +   D+N YE   + +
Sbjct:   11 DLMKLMMSDYKVDMINDGMHEFFVHFHGPKDSIYQGGVWKVRVELTEAYPYKSPSIGFTNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNIFEVFLPQLLLYPNPSDPLNGEAASLMMRDKNAYENKVKEY 142          
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UBCX_PICAN (Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia angusta GN=PEX4 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.085e-18
Identity = 55/167 (32.93%), Postives = 83/167 (49.70%), Query Frame = 3
Query:  126 KRILKELKDLQKDPPTSCSA---------GPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRT----------------------KVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTA 530
            KR+LKE + ++K+     S           P+ + +F W A I GP  SP+   ++ + I  P +YP  PPK+ F                        K+ HPN+N   G ICLDIL+++WSPA T+   L++I  LL +P P  PL  ++A++ K D    +TTA
Sbjct:    6 KRLLKEYRAVKKELTEKRSPIHDTGIVDLHPLEDGLFRWSAVIRGPDQSPFEDALWKLEIDIPTNYPLDPPKIKFVVFGEEKIRQLQRKTSSGARKVCYKMPHPNVNFKTGEICLDILQQKWSPAWTLQSALVAIVVLLANPEPLSPLNIDMANLLKCD----DTTA 168          
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UBC8_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC8 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 7.085e-18
Identity = 42/118 (35.59%), Postives = 67/118 (56.78%), Query Frame = 3
Query:  192 VAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVL-LSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSW 539
            + + M  +    +GP D+PY  GV+ + +  P +YP+K P + F  K+FHPNI+ ++GSICLD++   WSP   +  ++   I  LL +PN  DPL  E A +   D+  YE   + +
Sbjct:   25 INDSMQEFHVKFLGPKDTPYENGVWRLHVELPDNYPYKSPSIGFVNKIFHPNIDIASGSICLDVINSTWSPLYDLINIVEWMIPGLLKEPNGSDPLNNEAATLQLRDKKLYEEKIKEY 142          
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UB12L_ARATH (Probable NEDD8-conjugating enzyme Ubc12-like OS=Arabidopsis thaliana GN=RCE2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.085e-18
Identity = 46/148 (31.08%), Postives = 79/148 (53.38%), Query Frame = 3
Query:   90 GSAASQVETMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTAR 533
            G++  + ++    R+ K++ +L        S      D+ +++ TI  P +  Y  G F+ +      YP + PKV  +TKV+HPNI+  G++CL+IL+E W P L I+ V+  +  L T+PN +DPL  E A + + +   +E   R
Sbjct:   22 GASTVKKQSAGELRLHKDISELNLPKSCKISFPNGKNDLMNFEVTIK-PDEGYYLSGNFVFSFQVSNMYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNYEDPLNHEAAAVLRDNPKTFEYNVR 168          
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UBE2Z_XENTR (Ubiquitin-conjugating enzyme E2 Z OS=Xenopus tropicalis GN=ube2z PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 9.253e-18
Identity = 51/120 (42.50%), Postives = 65/120 (54.17%), Query Frame = 3
Query:  129 RILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAF-----RTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNP 461
            RI +++  + K+PP      P   DM    A I GP D+PY GG FL     PPDYP  PP+V        T  F+PN   NG +CL IL       WSPA ++S VL+SI SL+T+ NP
Sbjct:   62 RIKRDIMSIYKEPPPGMFVVPDPHDMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSLSSVLISIQSLMTE-NP 180          
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UB2L6_MOUSE (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Mus musculus GN=Ube2l6 PE=2 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 1.208e-17
Identity = 48/143 (33.57%), Postives = 77/143 (53.85%), Query Frame = 3
Query:  117 MASKRILKELKDLQKD-PPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSW 539
            MASKR+ KEL+ L K+ PP          ++  W   ++ P   PY    F V I FP +YPFKPP + F TK++HPN+  +G +CL ++  E W P     +VL ++  L++ PN ++P+  E+A +   +   +   A  +
Sbjct:    2 MASKRVAKELESLSKELPPYLRQLSSDDANVLVWHMLLL-PDQLPYGLKAFQVRIDFPREYPFKPPTLRFTTKIYHPNVREDGLVCLPLISNENWKPYTKPYQVLEALNVLVSKPNLEEPVRLELADLLTQNPEMFRKKAEEF 143          
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UBE2U_HUMAN (Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens GN=UBE2U PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.578e-17
Identity = 48/135 (35.56%), Postives = 79/135 (58.52%), Query Frame = 3
Query:  138 KELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSN-GSICLDIL--KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTAR 533
            ++  DL+++     +A PV+EDM  W+  I G  +S + G VF +TIHF  +Y + PP V F T  FHPN++ + G  C+D L   E+W+   T+S +LL++  +L++P  ++P+  E A +   D + Y T  R
Sbjct:   11 RDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILR 145          
BLAST of CF504019 vs. ExPASy Swiss-Prot
Match: UBC6_SCHPO (Ubiquitin-conjugating enzyme E2 6 OS=Schizosaccharomyces pombe GN=ubc6 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.692e-17
Identity = 44/113 (38.94%), Postives = 63/113 (55.75%), Query Frame = 3
Query:  120 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLT 449
            A KR++KE   LQK+P     A P  E++  W   I GPPD+PY GG +  T+ FPPDYPFKPP +   T        +N  +CL   D   + W+P+  +S +L+ + S +T
Sbjct:    6 AYKRLMKEYLALQKNPVELVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPPDYPFKPPAIRMITP--SGRFQTNTRLCLSFSDFHPKSWNPSWMVSTILVGLVSFMT 116          
The following BLAST results are available for this feature:
BLAST of CF504019 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBE2Z_HUMAN5.425e-1843.33Ubiquitin-conjugating enzyme E2 Z OS=Homo sapiens ... [more]
UBE2Z_DANRE5.425e-1843.33Ubiquitin-conjugating enzyme E2 Z OS=Danio rerio G... [more]
UBC4_WHEAT5.425e-1833.33Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum... [more]
UBCX_PICAN7.085e-1832.93Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia a... [more]
UBC8_YEAST7.085e-1835.59Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UB12L_ARATH7.085e-1831.08Probable NEDD8-conjugating enzyme Ubc12-like OS=Ar... [more]
UBE2Z_XENTR9.253e-1842.50Ubiquitin-conjugating enzyme E2 Z OS=Xenopus tropi... [more]
UB2L6_MOUSE1.208e-1733.57Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Mus mu... [more]
UBE2U_HUMAN1.578e-1735.56Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens ... [more]
UBC6_SCHPO2.692e-1738.94Ubiquitin-conjugating enzyme E2 6 OS=Schizosacchar... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-507 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504019 ID=CF504019; Name=CF504019; organism=Citrus sinensis; type=EST; length=541bp
ATTTTTTTAAGTATCTCAGTTTTTGTTTCTAATTTTCCCGATCTCCCTGT
CTCCCTCACGAATCCACATATTGCAAGGCCAAATCAGGAGGATCTGCTGC
TTCTCAGGTTGAAACTATGGCGTCGAAACGGATCTTGAAGGAGCTCAAAG
ATTTGCAGAAGGATCCTCCTACATCATGCAGTGCCGGTCCTGTTGCTGAA
GACATGTTTCATTGGCAGGCGACAATCATGGGTCCTCCAGATAGTCCGTA
TGCTGGGGGTGTTTTTCTAGTTACCATCCATTTTCCCCCAGACTATCCAT
TCAAGCCTCCCAAGGTAGCATTCAGGACAAAGGTATTTCATCCTAACATA
AATAGCAATGGGAGCATTTGCCTTGACATCTTGAAGGAACAATGGAGTCC
TGCTCTTACCATTTCCAAGGTGTTGCTATCAATCTGTTCATTATTGACGG
ATCCAAATCCCGATGATCCGTTGGTACCAGAAATTGCTCACATGTACAAG
ACCGACAGGAACAAGTACGAGACAACTGCAAGGAGCTGGAC
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