CF504022

Overview
NameCF504022
Unique NameCF504022
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length309
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: PRDX2_MOUSE (Peroxiredoxin-2 OS=Mus musculus GN=Prdx2 PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 1.069e-25
Identity = 55/83 (66.27%), Postives = 63/83 (75.90%), Query Frame = 1
Query:   58 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQT 306
            +G +APDF A AV D  F  +KLSDY GK YV+LFFYPLDFTFVCPTEI AFSD   +F KL  E+LGVS DS F+HLAW+ T
Sbjct:    8 IGKSAPDFTATAVVDGAFKEIKLSDYRGK-YVVLFFYPLDFTFVCPTEIIAFSDHAEDFRKLGCEVLGVSVDSQFTHLAWINT 89          
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: PRDX2_PONAB (Peroxiredoxin-2 OS=Pongo abelii GN=PRDX2 PE=2 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 1.824e-25
Identity = 56/83 (67.47%), Postives = 63/83 (75.90%), Query Frame = 1
Query:   58 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQT 306
            +G  APDF A AV D  F  VKLSDY GK YV+LFFYPLDFTFVCPTEI AFS+R  +F KL  E+LGVS DS F+HLAW+ T
Sbjct:    8 IGKPAPDFKATAVVDGAFKEVKLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSNRAEDFHKLGCEVLGVSVDSQFTHLAWINT 89          
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: PRDX2_MACFA (Peroxiredoxin-2 OS=Macaca fascicularis GN=PRDX2 PE=2 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 1.824e-25
Identity = 56/83 (67.47%), Postives = 63/83 (75.90%), Query Frame = 1
Query:   58 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQT 306
            +G  APDF A AV D  F  VKLSDY GK YV+LFFYPLDFTFVCPTEI AFS+R  +F KL  E+LGVS DS F+HLAW+ T
Sbjct:    8 IGKPAPDFKATAVVDGAFKEVKLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINT 89          
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: PRDX2_HUMAN (Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5)

HSP 1 Score: 114.39 bits (285), Expect = 1.824e-25
Identity = 56/83 (67.47%), Postives = 63/83 (75.90%), Query Frame = 1
Query:   58 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQT 306
            +G  APDF A AV D  F  VKLSDY GK YV+LFFYPLDFTFVCPTEI AFS+R  +F KL  E+LGVS DS F+HLAW+ T
Sbjct:    8 IGKPAPDFKATAVVDGAFKEVKLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINT 89          
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: PRDX2_RAT (Peroxiredoxin-2 OS=Rattus norvegicus GN=Prdx2 PE=1 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 5.306e-25
Identity = 54/83 (65.06%), Postives = 61/83 (73.49%), Query Frame = 1
Query:   58 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQT 306
            +G  APDF   AV D  F  +KLSDY GK YV+LFFYPLDFTFVCPTEI AFSD   +F KL  E+LGVS DS F+HLAW+ T
Sbjct:    8 IGKPAPDFTGTAVVDGAFKEIKLSDYRGK-YVVLFFYPLDFTFVCPTEIIAFSDHAEDFRKLGCEVLGVSVDSQFTHLAWINT 89          
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: PRDX2_CRIGR (Peroxiredoxin-2 OS=Cricetulus griseus GN=PRDX2 PE=2 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 5.306e-25
Identity = 55/83 (66.27%), Postives = 62/83 (74.70%), Query Frame = 1
Query:   58 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQT 306
            +G  APDF A AV D  F  VKLSDY GK YV+LFFYPLDFTFVCPTEI AFS+   +F KL  E+LGVS DS F+HLAW+ T
Sbjct:    8 IGKPAPDFTATAVVDGAFKEVKLSDYRGK-YVVLFFYPLDFTFVCPTEIIAFSNHAEDFRKLGCEVLGVSVDSQFTHLAWINT 89          
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: TDX1_BRUMA (Thioredoxin peroxidase 1 OS=Brugia malayi GN=TSA1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.930e-25
Identity = 53/81 (65.43%), Postives = 64/81 (79.01%), Query Frame = 1
Query:   64 NTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQT 306
            N APDF+  AV + +F  + + DY GK ++ILFFYPLDFTFVCPTEITAFSDR  EF+KLNTE++  S DS FSHLAW+QT
Sbjct:   37 NKAPDFSGTAVVNGDFKTISMKDYKGK-WLILFFYPLDFTFVCPTEITAFSDRCAEFQKLNTELIACSCDSHFSHLAWIQT 116          
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: PRDX_ASCSU (Peroxiredoxin OS=Ascaris suum PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.050e-25
Identity = 52/84 (61.90%), Postives = 64/84 (76.19%), Query Frame = 1
Query:   55 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQT 306
            ++G  AP+F A AV D +F ++ LSDY GK YV+LFFYP+DFTFVCPTEI AFS+   EF+KL  E+L  STDS FSHLAW+ T
Sbjct:    5 MIGKPAPEFTATAVVDGDFKSISLSDYKGK-YVVLFFYPMDFTFVCPTEIIAFSEHVGEFKKLGVEVLAASTDSQFSHLAWINT 87          
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: PRDX1_GECJA (Peroxiredoxin-1 OS=Gecko japonicus GN=PRDX1 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.050e-25
Identity = 55/84 (65.48%), Postives = 63/84 (75.00%), Query Frame = 1
Query:   58 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQT 306
            +G  APDF A AV  D +F  +KLSDY GK YV+LFFYPLDFTFVCPTEI AFSDR  EF K+N E++G S DS F HLAW+ T
Sbjct:    8 IGKLAPDFQATAVMPDGQFKEIKLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSDRSEEFRKINCEVIGASVDSHFCHLAWINT 90          
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: PRDX1_CHICK (Peroxiredoxin-1 OS=Gallus gallus GN=PRDX1 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.016e-24
Identity = 54/84 (64.29%), Postives = 64/84 (76.19%), Query Frame = 1
Query:   58 VGNTAPDFAAEAVF-DQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQT 306
            +G  APDF A AV  D +F ++KLSDY GK YV+ FFYPLDFTFVCPTEI A+SDR  EF+K+N EI+G S DS F HLAW+ T
Sbjct:    8 IGKPAPDFTATAVMPDGQFKDIKLSDYRGK-YVVFFFYPLDFTFVCPTEIIAYSDRADEFKKINCEIIGASVDSHFCHLAWINT 90          
The following BLAST results are available for this feature:
BLAST of CF504022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
PRDX2_MOUSE1.069e-2566.27Peroxiredoxin-2 OS=Mus musculus GN=Prdx2 PE=1 SV=3[more]
PRDX2_PONAB1.824e-2567.47Peroxiredoxin-2 OS=Pongo abelii GN=PRDX2 PE=2 SV=3[more]
PRDX2_MACFA1.824e-2567.47Peroxiredoxin-2 OS=Macaca fascicularis GN=PRDX2 PE... [more]
PRDX2_HUMAN1.824e-2567.47Peroxiredoxin-2 OS=Homo sapiens GN=PRDX2 PE=1 SV=5[more]
PRDX2_RAT5.306e-2565.06Peroxiredoxin-2 OS=Rattus norvegicus GN=Prdx2 PE=1... [more]
PRDX2_CRIGR5.306e-2566.27Peroxiredoxin-2 OS=Cricetulus griseus GN=PRDX2 PE=... [more]
TDX1_BRUMA6.930e-2565.43Thioredoxin peroxidase 1 OS=Brugia malayi GN=TSA1 ... [more]
PRDX_ASCSU9.050e-2561.90Peroxiredoxin OS=Ascaris suum PE=2 SV=1[more]
PRDX1_GECJA9.050e-2565.48Peroxiredoxin-1 OS=Gecko japonicus GN=PRDX1 PE=2 S... [more]
PRDX1_CHICK2.016e-2464.29Peroxiredoxin-1 OS=Gallus gallus GN=PRDX1 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-510 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504022 ID=CF504022; Name=CF504022; organism=Citrus sinensis; type=EST; length=309bp
GGGTCCCGTTCTCGCAAGTCCTTCGTTGTCAAAGCATCCGTTGAAATACC
ACCATTGGTGGGCAACACGGCACCTGATTTTGCTGCAGAGGCTGTTTTCG
ATCAAGAGTTCATCAATGTCAAGCTTTCGGATTACATTGGGAAGAAATAT
GTGATTCTCTTTTTCTACCCGTTGGACTTCACATTTGTTTGCCCCACAGA
AATCACTGCTTTCAGCGACCGATATACTGAATTTGAGAAGCTAAACACAG
AGATATTGGGTGTCTCAACCGACAGTGTGTTTTCACACTTGGCATGGGTC
CAAACAGAC
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