CF504022

Overview
NameCF504022
Unique NameCF504022
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length309
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: TDXH2_PICTO (Probable peroxiredoxin 2 OS=Picrophilus torridus GN=PTO0727 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.601e-13
Identity = 37/86 (43.02%), Postives = 54/86 (62.79%), Query Frame = 1
Query:   46 IPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQ 303
            +P  +G  APDF A          + LSDY   K+V+LF +P DFT +C TE   FS RY +F++LN E++G+S DS+ SH+ W++
Sbjct:    1 MPVYLGKRAPDFTANTTRGV----ISLSDY-KNKWVLLFSHPADFTPICTTEFIEFSRRYNDFKELNVELIGLSVDSLQSHIEWLK 81          
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: TDXH_IGNH4 (Probable peroxiredoxin OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=Igni_0459 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.091e-13
Identity = 37/82 (45.12%), Postives = 51/82 (62.20%), Query Frame = 1
Query:   52 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAW 297
            PL+G   P    E V   +    KL D    K++++F +P DFT VC TE  AF+ RY +F+KLNTE+LG+S D+ FSH+ W
Sbjct:    6 PLIGEKLP----EMVVHTDHGPKKLPDDYKGKWLVIFSHPADFTPVCTTEFVAFAKRYEDFKKLNTELLGLSVDNSFSHIKW 83          
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: TSA1_CANAL (Peroxiredoxin TSA1 OS=Candida albicans GN=TSA1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.038e-12
Identity = 38/82 (46.34%), Postives = 51/82 (62.20%), Query Frame = 1
Query:   52 PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAW 297
            P+V   AP F   AV D  F  V L  Y GK +V+L F PL FTFVCP+EI A+S+   +F + + ++L  STDS ++ LAW
Sbjct:    3 PVVQQPAPSFKKTAVVDGVFEEVTLEQYKGK-WVLLAFIPLAFTFVCPSEIIAYSEAVKKFAEKDAQVLFASTDSEYTWLAW 83          
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: AHPC_SALTY (Alkyl hydroperoxide reductase subunit C OS=Salmonella typhimurium GN=ahpC PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.038e-12
Identity = 35/81 (43.21%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   55 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAW 297
            L+      F  +A  + EFI V   D  G+ + + FFYP DFTFVCPTE+   +D Y E +KL  ++  VSTD+ F+H AW
Sbjct:    3 LINTKIKPFKNQAFKNGEFIEVTEKDTEGR-WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAW 82          
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: AHPC_SALTI (Alkyl hydroperoxide reductase subunit C OS=Salmonella typhi GN=ahpC PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.038e-12
Identity = 35/81 (43.21%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   55 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAW 297
            L+      F  +A  + EFI V   D  G+ + + FFYP DFTFVCPTE+   +D Y E +KL  ++  VSTD+ F+H AW
Sbjct:    3 LINTKIKPFKNQAFKNGEFIEVTEKDTEGR-WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAW 82          
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: AHPC_SHIFL (Alkyl hydroperoxide reductase subunit C OS=Shigella flexneri GN=ahpC PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.356e-12
Identity = 34/81 (41.98%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   55 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAW 297
            L+      F  +A  + EFI +   D  G+ + + FFYP DFTFVCPTE+   +D Y E +KL  ++  VSTD+ F+H AW
Sbjct:    3 LINTKIKPFKNQAFKNGEFIEITEKDTEGR-WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAW 82          
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: AHPC_ECOLI (Alkyl hydroperoxide reductase subunit C OS=Escherichia coli (strain K12) GN=ahpC PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.356e-12
Identity = 34/81 (41.98%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   55 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAW 297
            L+      F  +A  + EFI +   D  G+ + + FFYP DFTFVCPTE+   +D Y E +KL  ++  VSTD+ F+H AW
Sbjct:    3 LINTKIKPFKNQAFKNGEFIEITEKDTEGR-WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAW 82          
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: AHPC_ECOL6 (Alkyl hydroperoxide reductase subunit C OS=Escherichia coli O6 GN=ahpC PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.356e-12
Identity = 34/81 (41.98%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   55 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAW 297
            L+      F  +A  + EFI +   D  G+ + + FFYP DFTFVCPTE+   +D Y E +KL  ++  VSTD+ F+H AW
Sbjct:    3 LINTKIKPFKNQAFKNGEFIEITEKDTEGR-WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAW 82          
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: AHPC_ECO57 (Alkyl hydroperoxide reductase subunit C OS=Escherichia coli O157:H7 GN=ahpC PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.356e-12
Identity = 34/81 (41.98%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   55 LVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAW 297
            L+      F  +A  + EFI +   D  G+ + + FFYP DFTFVCPTE+   +D Y E +KL  ++  VSTD+ F+H AW
Sbjct:    3 LINTKIKPFKNQAFKNGEFIEITEKDTEGR-WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAW 82          
BLAST of CF504022 vs. ExPASy Swiss-Prot
Match: TDXH_SULSO (Probable peroxiredoxin OS=Sulfolobus solfataricus GN=SSO2121 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.020e-12
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 1
Query:   37 SVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWV 300
            S E  PL+G   P+   E +  Q    +KL D    ++ +LF +P DFT VC TE  +F+ +Y EF+KLNTE++G+S DS  SH+ W+
Sbjct:    2 SEERIPLIGERFPEM--EVITTQG--RIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWI 85          
The following BLAST results are available for this feature:
BLAST of CF504022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
TDXH2_PICTO1.601e-1343.02Probable peroxiredoxin 2 OS=Picrophilus torridus G... [more]
TDXH_IGNH42.091e-1345.12Probable peroxiredoxin OS=Ignicoccus hospitalis (s... [more]
TSA1_CANAL1.038e-1246.34Peroxiredoxin TSA1 OS=Candida albicans GN=TSA1 PE=... [more]
AHPC_SALTY1.038e-1243.21Alkyl hydroperoxide reductase subunit C OS=Salmone... [more]
AHPC_SALTI1.038e-1243.21Alkyl hydroperoxide reductase subunit C OS=Salmone... [more]
AHPC_SHIFL1.356e-1241.98Alkyl hydroperoxide reductase subunit C OS=Shigell... [more]
AHPC_ECOLI1.356e-1241.98Alkyl hydroperoxide reductase subunit C OS=Escheri... [more]
AHPC_ECOL61.356e-1241.98Alkyl hydroperoxide reductase subunit C OS=Escheri... [more]
AHPC_ECO571.356e-1241.98Alkyl hydroperoxide reductase subunit C OS=Escheri... [more]
TDXH_SULSO3.020e-1242.05Probable peroxiredoxin OS=Sulfolobus solfataricus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-510 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504022 ID=CF504022; Name=CF504022; organism=Citrus sinensis; type=EST; length=309bp
GGGTCCCGTTCTCGCAAGTCCTTCGTTGTCAAAGCATCCGTTGAAATACC
ACCATTGGTGGGCAACACGGCACCTGATTTTGCTGCAGAGGCTGTTTTCG
ATCAAGAGTTCATCAATGTCAAGCTTTCGGATTACATTGGGAAGAAATAT
GTGATTCTCTTTTTCTACCCGTTGGACTTCACATTTGTTTGCCCCACAGA
AATCACTGCTTTCAGCGACCGATATACTGAATTTGAGAAGCTAAACACAG
AGATATTGGGTGTCTCAACCGACAGTGTGTTTTCACACTTGGCATGGGTC
CAAACAGAC
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