CF504030

Overview
NameCF504030
Unique NameCF504030
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length286
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: GRP75_RAT (Stress-70 protein, mitochondrial OS=Rattus norvegicus GN=Hspa9 PE=1 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 2.606e-32
Identity = 69/92 (75.00%), Postives = 75/92 (81.52%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            K+I RNTT+PT KS+VFSTAADGQT VEI V QGERE   DNK LG F L GIPPAPRGVPQIEV FDIDANGI+ VSA DKGTG++Q I I
Sbjct:  456 KLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVI 547          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: GRP75_PONAB (Stress-70 protein, mitochondrial OS=Pongo abelii GN=HSPA9 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.606e-32
Identity = 69/92 (75.00%), Postives = 75/92 (81.52%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            K+I RNTT+PT KS+VFSTAADGQT VEI V QGERE   DNK LG F L GIPPAPRGVPQIEV FDIDANGI+ VSA DKGTG++Q I I
Sbjct:  456 KLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVI 547          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: GRP75_MOUSE (Stress-70 protein, mitochondrial OS=Mus musculus GN=Hspa9 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 2.606e-32
Identity = 69/92 (75.00%), Postives = 75/92 (81.52%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            K+I RNTT+PT KS+VFSTAADGQT VEI V QGERE   DNK LG F L GIPPAPRGVPQIEV FDIDANGI+ VSA DKGTG++Q I I
Sbjct:  456 KLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVI 547          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: GRP75_HUMAN (Stress-70 protein, mitochondrial OS=Homo sapiens GN=HSPA9 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 2.606e-32
Identity = 69/92 (75.00%), Postives = 75/92 (81.52%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            K+I RNTT+PT KS+VFSTAADGQT VEI V QGERE   DNK LG F L GIPPAPRGVPQIEV FDIDANGI+ VSA DKGTG++Q I I
Sbjct:  456 KLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVI 547          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: GRP75_BOVIN (Stress-70 protein, mitochondrial OS=Bos taurus GN=HSPA9 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.606e-32
Identity = 69/92 (75.00%), Postives = 75/92 (81.52%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            K+I RNTT+PT KS+VFSTAADGQT VEI V QGERE   DNK LG F L GIPPAPRGVPQIEV FDIDANGI+ VSA DKGTG++Q I I
Sbjct:  456 KLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVI 547          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_DESHD (Chaperone protein dnaK OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=dnaK PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.606e-32
Identity = 67/95 (70.53%), Postives = 79/95 (83.16%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGA 286
            +II RNTT+PT+KS+VFSTAAD QTSV+I+VLQGERE    NK+LG F L GIPPAPRG+PQIEVKFDIDANGI+ VSA D  TG +Q +TIT +
Sbjct:  381 RIIDRNTTVPTTKSQVFSTAADSQTSVDIHVLQGEREMAAYNKTLGRFQLSGIPPAPRGIPQIEVKFDIDANGIVHVSAKDMATGNEQKVTITAS 475          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_DESAP (Chaperone protein dnaK OS=Desulforudis audaxviator (strain MP104C) GN=dnaK PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.606e-32
Identity = 66/95 (69.47%), Postives = 80/95 (84.21%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGA 286
            KII RNTT+PT++S++F+TAAD Q SVEI+VLQGER+    NK+LG F+L GIPPAPRG+PQIEV FDID NGI++VSA D GTGK Q ITITG+
Sbjct:  381 KIIERNTTIPTARSQIFTTAADNQPSVEIHVLQGERQMAAGNKTLGRFNLVGIPPAPRGIPQIEVTFDIDVNGIVNVSAKDLGTGKSQSITITGS 475          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_CLONN (Chaperone protein dnaK OS=Clostridium novyi (strain NT) GN=dnaK PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.606e-32
Identity = 65/94 (69.15%), Postives = 80/94 (85.11%), Query Frame = 2
Query:    5 IIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITITGA 286
            +I RNTT+PT KS++FSTAAD QTSV+I+++QGER+   DNK+LG F L GI PAPRG+PQIEV FDIDANGIL+VSA DKGTGK+ +ITIT +
Sbjct:  383 LIERNTTIPTRKSQIFSTAADNQTSVDIHIVQGERKMAGDNKTLGRFQLSGIAPAPRGIPQIEVSFDIDANGILNVSAKDKGTGKEANITITAS 476          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: HSP7M_PEA (Heat shock 70 kDa protein, mitochondrial OS=Pisum sativum GN=HSP1 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.404e-32
Identity = 68/92 (73.91%), Postives = 76/92 (82.61%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            ++I RNTT+PT KS+VFSTAAD QT V I VLQGERE   DNKSLG F L GIPPAPRG+PQIEV FDIDANGI++VSA DK TGK+Q ITI
Sbjct:  454 RLISRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMAADNKSLGEFDLVGIPPAPRGLPQIEVTFDIDANGIVTVSAKDKSTGKEQQITI 545          
BLAST of CF504030 vs. ExPASy Swiss-Prot
Match: DNAK_SYMTH (Chaperone protein dnaK OS=Symbiobacterium thermophilum GN=dnaK PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.404e-32
Identity = 68/92 (73.91%), Postives = 77/92 (83.70%), Query Frame = 2
Query:    2 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFHLDGIPPAPRGVPQIEVKFDIDANGILSVSAVDKGTGKKQDITI 277
            K+I RNTT+PT KS++FSTAADGQT VEI+VLQGERE    NK+LG F LDGIPPAPRGVP+IEV FDID NGI+ VSA D GTGK+Q ITI
Sbjct:  381 KLIERNTTIPTRKSQIFSTAADGQTQVEIHVLQGEREMAAYNKTLGRFILDGIPPAPRGVPKIEVTFDIDVNGIVHVSAKDLGTGKEQKITI 472          
The following BLAST results are available for this feature:
BLAST of CF504030 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GRP75_RAT2.606e-3275.00Stress-70 protein, mitochondrial OS=Rattus norvegi... [more]
GRP75_PONAB2.606e-3275.00Stress-70 protein, mitochondrial OS=Pongo abelii G... [more]
GRP75_MOUSE2.606e-3275.00Stress-70 protein, mitochondrial OS=Mus musculus G... [more]
GRP75_HUMAN2.606e-3275.00Stress-70 protein, mitochondrial OS=Homo sapiens G... [more]
GRP75_BOVIN2.606e-3275.00Stress-70 protein, mitochondrial OS=Bos taurus GN=... [more]
DNAK_DESHD2.606e-3270.53Chaperone protein dnaK OS=Desulfitobacterium hafni... [more]
DNAK_DESAP2.606e-3269.47Chaperone protein dnaK OS=Desulforudis audaxviator... [more]
DNAK_CLONN2.606e-3269.15Chaperone protein dnaK OS=Clostridium novyi (strai... [more]
HSP7M_PEA3.404e-3273.91Heat shock 70 kDa protein, mitochondrial OS=Pisum ... [more]
DNAK_SYMTH3.404e-3273.91Chaperone protein dnaK OS=Symbiobacterium thermoph... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-518 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504030 ID=CF504030; Name=CF504030; organism=Citrus sinensis; type=EST; length=286bp
CAAAATTATTCCTAGAAATACAACTTTGCCCACTTCCAAGTCAGAGGTGT
TCTCAACAGCTGCTGATGGTCAGACCAGTGTCGAGATCAATGTTCTCCAA
GGTGAAAGAGAATTCGTGAGGGACAACAAATCTCTTGGCAGCTTCCATCT
TGATGGCATCCCTCCAGCACCGCGTGGGGTTCCTCAAATTGAGGTTAAAT
TTGACATCGATGCCAATGGTATTCTTTCTGTCTCTGCTGTTGACAAAGGC
ACCGGAAAGAAACAAGACATCACCATTACTGGTGCT
back to top