CF504060

Overview
NameCF504060
Unique NameCF504060
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504060 vs. ExPASy Swiss-Prot
Match: ELMOC_DICDI (ELMO domain-containing protein C OS=Dictyostelium discoideum GN=elmoC PE=4 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.899e-11
Identity = 34/108 (31.48%), Postives = 60/108 (55.56%), Query Frame = 1 
Query:  253 HDESRPDHQAALRDLWRIAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKMLDLFSEN 576
            ++ + PDH+  L+ LW + +P        S  WK  G+Q  +P+ DFRG G + L NL+ L +++    Q +L +        +YPFAVAGIN+S ++ ++  +  ++
Sbjct:  376 YESTNPDHEEYLKHLWSLLYPEQEFQKK-SPLWKKFGFQSDDPTRDFRGMGIMGLLNLIHLVQHHNDWVQEILAQDR------DYPFAVAGINISNLIFEVFQISEDS 476
The following BLAST results are available for this feature:
BLAST of CF504060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
ELMOC_DICDI2.899e-1131.48ELMO domain-containing protein C OS=Dictyostelium ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-548 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504060 ID=CF504060; Name=CF504060; organism=Citrus sinensis; type=EST; length=608bp
GAGTTGATGAGGATGAAATCTATTGGAGACAGAAGAAGGATGATGAGGAG
TTGGAATGGTCACAGAATTCCAGTCATGTAATTTCTCAGTTGGCTCAATG
TTTCACTAGTGCTATGGTTGGACCACGAGCATGGATAGGAGGGCTGTTTA
ACCGCTCAGCAAATAGACGTAATGAGAGGTTTCATGATTATCATTTGACT
CCTCCTCAGGAAGAGAGACTTCAAAGACTTCAAGAAAGATTACAAACTCC
TTCATGACGAGAGTCGCCCTGATCATCAAGCAGCTCTTAGAGATTTGTGG
CGCATTGCCTTTCCAAATGTTGTTCTAAATGGCATGATCTCTGAGCAATG
GAAAGACATGGGGTGGCAAGGTCCTAATCCATCAACTGACTTCAGGGGTT
GCGGATTTATTTCTCTTGAAAACTTGCTTTTCCTTGCCAAGAATTATCCG
GCATCTTTTCAGAGGTTGTTATTCAAGCAAGGGGGAAATCGAGCGACTTG
GGAGTATCCATTTGCTGTTGCTGGCATTAATGTGTCATTTATGTTGATTA
AGATGTTGGATTTATTCTCAGAAAACCACGATGTCTCCCGGGATGAATTT
GTTAGAAT
back to top