CF504078

Overview
NameCF504078
Unique NameCF504078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length363
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8225 contig Csv1_Contig8225:653..1014. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH3A_CAEEL (Probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=F43G9.1 PE=1 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 3.457e-32
Identity = 60/98 (61.22%), Postives = 82/98 (83.67%), Query Frame = 3
Query:   48 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEG 341
            F YA+ +GR+ V+A+HKANIM+++DGLFL  CRE A  YP+I ++E  +D  C+ +V++P+ +DVLVMPNLYGDI+SDLCAGL+GGLG+TPS NIG+G
Sbjct:  177 FEYARQNGRKVVTAVHKANIMRQSDGLFLSICREQAALYPDIKFKEAYLDTVCLNMVQDPSQYDVLVMPNLYGDILSDLCAGLVGGLGVTPSGNIGKG 274          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH3A_RAT (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Rattus norvegicus GN=Idh3a PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 7.533e-32
Identity = 62/105 (59.05%), Postives = 83/105 (79.05%), Query Frame = 3
Query:   48 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEA 362
            F YA+ + R  V+A+HKANIM+ +DGLFL+ CREVAE   +I + E+ +D  C+ +V++P+ FDVLVMPNLYGDI+SDLCAGLIGGLG+T S NIG  G+A+ E+
Sbjct:  184 FEYARNNHRSNVTAVHKANIMRMSDGLFLQKCREVAENCKDIKFNEMYLDTVCLNMVQDPSQFDVLVMPNLYGDILSDLCAGLIGGLGVTQSGNIGANGVAIFES 288          

HSP 2 Score: 21.557 bits (44), Expect = 7.533e-32
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 2
Query:    2 KIITRQASLRVAEYA 46
            K+IT  AS R+AE+A
Sbjct:  169 KLITEGASKRIAEFA 183          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDHB_DICDI (Isocitrate dehydrogenase [NAD] regulatory subunit B, mitochondrial OS=Dictyostelium discoideum GN=idhB PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.926e-31
Identity = 57/100 (57.00%), Postives = 79/100 (79.00%), Query Frame = 3
Query:   48 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGI 347
            F YAK +GR++V+A+HKANI ++TDGLFL  C ++A++YPEI +E  +IDNCCM LVK+P  +DV+V PNLYG+I+S++ A L+GG GL    N+GEG I
Sbjct:  178 FEYAKANGRKKVTAVHKANIQKQTDGLFLATCTQIAKEYPEIKFENTIIDNCCMQLVKSPEQYDVMVTPNLYGNIVSNIGAALVGGPGLAGGANVGEGSI 277          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH3B_RAT (Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Rattus norvegicus GN=Idh3B PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.112e-30
Identity = 59/91 (64.84%), Postives = 73/91 (80.22%), Query Frame = 3
Query:   48 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTP 320
            F YA   GR +V+A+HKANIM+  DGLFL+CC EVAE YP+I +E ++IDNCCM LV+NP  FDVLVMPNLYG+II +L AGL+GG G+ P
Sbjct:  202 FDYATKKGRSKVTAVHKANIMKLGDGLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVP 292          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH3B_MACFA (Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Macaca fascicularis GN=IDH3B PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 1.112e-30
Identity = 59/91 (64.84%), Postives = 73/91 (80.22%), Query Frame = 3
Query:   48 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTP 320
            F YA   GR +V+A+HKANIM+  DGLFL+CC EVAE YP+I +E ++IDNCCM LV+NP  FDVLVMPNLYG+II +L AGL+GG G+ P
Sbjct:  202 FDYATKKGRSKVTAVHKANIMKLGDGLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVP 292          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH3B_BOVIN (Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Bos taurus GN=IDH3B PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 1.112e-30
Identity = 59/91 (64.84%), Postives = 74/91 (81.32%), Query Frame = 3
Query:   48 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTP 320
            F YA   GR +V+A+HKANIM+  DGLFL+CC EVAE YP+I +E+++IDNCCM LV+NP  FDVLVMPNLYG+II +L AGL+GG G+ P
Sbjct:  202 FDYATKKGRGKVTAVHKANIMKLGDGLFLQCCEEVAELYPKIKFEKMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVP 292          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH3B_HUMAN (Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Homo sapiens GN=IDH3B PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 1.897e-30
Identity = 59/91 (64.84%), Postives = 73/91 (80.22%), Query Frame = 3
Query:   48 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTP 320
            F YA   GR +V+A+HKANIM+  DGLFL+CC EVAE YP+I +E ++IDNCCM LV+NP  FDVLVMPNLYG+II +L AGL+GG G+ P
Sbjct:  202 FDYATKKGRGKVTAVHKANIMKLGDGLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVP 292          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH3B_PONAB (Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Pongo abelii GN=IDH3B PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.477e-30
Identity = 59/91 (64.84%), Postives = 72/91 (79.12%), Query Frame = 3
Query:   48 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTP 320
            F YA   GR +V A+HKANIM+  DGLFL+CC EVAE YP+I +E ++IDNCCM LV+NP  FDVLVMPNLYG+II +L AGL+GG G+ P
Sbjct:  202 FDYATKKGRSKVIAVHKANIMKLGDGLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVP 292          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH1_ARATH (Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial OS=Arabidopsis thaliana GN=IDH1 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 1.229e-29
Identity = 54/96 (56.25%), Postives = 74/96 (77.08%), Query Frame = 3
Query:   48 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG 335
            F YA  + R++V+A+HKANIM+  DGLFL+ CREVA+KYP ITY E+++DNCCM LV  P  FDV+V PNLYG+++++  AG+ GG G+ P  N+G
Sbjct:  185 FEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVAKKYPSITYNEIIVDNCCMQLVAKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVG 280          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH3G_BOVIN (Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial OS=Bos taurus GN=IDH3G PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.739e-29
Identity = 55/96 (57.29%), Postives = 75/96 (78.12%), Query Frame = 3
Query:   48 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG 335
            F  A+  GR++V+A+HKANIM+  DGLFL+CCREVA +YP+IT+E +++DN  M LV  P  FDV+VMPNLYG+I++++CAGL+GG GL    N G
Sbjct:  204 FQLAQESGRKKVTAVHKANIMKLGDGLFLQCCREVAARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYG 299          
The following BLAST results are available for this feature:
BLAST of CF504078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 287
Match NameE-valueIdentityDescription
IDH3A_CAEEL3.457e-3261.22Probable isocitrate dehydrogenase [NAD] subunit al... [more]
IDH3A_RAT7.533e-3259.05Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]
IDHB_DICDI2.926e-3157.00Isocitrate dehydrogenase [NAD] regulatory subunit ... [more]
IDH3B_RAT1.112e-3064.84Isocitrate dehydrogenase [NAD] subunit beta, mitoc... [more]
IDH3B_MACFA1.112e-3064.84Isocitrate dehydrogenase [NAD] subunit beta, mitoc... [more]
IDH3B_BOVIN1.112e-3064.84Isocitrate dehydrogenase [NAD] subunit beta, mitoc... [more]
IDH3B_HUMAN1.897e-3064.84Isocitrate dehydrogenase [NAD] subunit beta, mitoc... [more]
IDH3B_PONAB2.477e-3064.84Isocitrate dehydrogenase [NAD] subunit beta, mitoc... [more]
IDH1_ARATH1.229e-2956.25Isocitrate dehydrogenase [NAD] regulatory subunit ... [more]
IDH3G_BOVIN2.739e-2957.29Isocitrate dehydrogenase [NAD] subunit gamma, mito... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-566 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504078 ID=CF504078; Name=CF504078; organism=Citrus sinensis; type=EST; length=363bp
CAAAATCATTACTCGTCAGGCTAGTTTGAGAGTTGCTGAATATGCCGTTT
CACTATGCGAAGACACATGGAAGAGAAAGAGTATCTGCAATACACAAAGC
AAATATTATGCAGAAAACTGATGGGCTTTTTTTGAAGTGTTGTCGTGAGG
TTGCCGAGAAGTACCCTGAGATAACATATGAGGAAGTTGTTATCGACAAT
TGCTGCATGATGCTTGTGAAGAATCCAGCGGCTTTCGATGTGTTGGTAAT
GCCTAACCTCTATGGGGACATCATTAGTGACCTATGTGCTGGGTTGATTG
GTGGATTGGGCTTAACACCTAGTTGCAATATTGGGGAAGGAGGAATTGCC
CTTGCTGAAGCTG
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