CF504078

Overview
NameCF504078
Unique NameCF504078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length363
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8225 contig Csv1_Contig8225:653..1014. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH3G_MACFA (Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial (Fragment) OS=Macaca fascicularis GN=IDH3G PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.577e-29
Identity = 55/96 (57.29%), Postives = 75/96 (78.12%), Query Frame = 3
Query:   48 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG 335
            F  A+  GR++V+A+HKANIM+  DGLFL+CCREVA +YP+IT+E +++DN  M LV  P  FDV+VMPNLYG+I++++CAGL+GG GL    N G
Sbjct:  167 FKLAQESGRKKVTAVHKANIMKLGDGLFLQCCREVAARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYG 262          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH3G_HUMAN (Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial OS=Homo sapiens GN=IDH3G PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.577e-29
Identity = 55/96 (57.29%), Postives = 75/96 (78.12%), Query Frame = 3
Query:   48 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG 335
            F  A+  GR++V+A+HKANIM+  DGLFL+CCREVA +YP+IT+E +++DN  M LV  P  FDV+VMPNLYG+I++++CAGL+GG GL    N G
Sbjct:  205 FKLAQESGRKKVTAVHKANIMKLGDGLFLQCCREVAARYPQITFENMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYG 300          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_ARCFU (3-isopropylmalate dehydrogenase OS=Archaeoglobus fulgidus GN=leuB PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.672e-29
Identity = 58/97 (59.79%), Postives = 73/97 (75.26%), Query Frame = 3
Query:   48 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGE 338
            F  AK  GR++V+A+HKAN+M+KT GLF   CREVA+ YPEI Y +  ID  CM LV +P  FDV+V  N++GDI+SDL AGL+GGLGL PS N+GE
Sbjct:  149 FELAKREGRKKVTALHKANVMKKTCGLFRDVCREVAKDYPEIQYNDYYIDAACMYLVMDPFRFDVIVTTNMFGDIVSDLAAGLVGGLGLAPSANVGE 245          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH3G_RAT (Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial OS=Rattus norvegicus GN=Idh3g PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 7.969e-29
Identity = 54/96 (56.25%), Postives = 75/96 (78.12%), Query Frame = 3
Query:   48 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG 335
            F  A+  GR++V+A+HKANIM+  DGLFL+CCREVA +YP+IT++ +++DN  M LV  P  FDV+VMPNLYG+I++++CAGL+GG GL    N G
Sbjct:  205 FKLAQESGRKKVTAVHKANIMKLGDGLFLQCCREVAARYPQITFDSMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYG 300          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH2_ARATH (Isocitrate dehydrogenase [NAD] regulatory subunit 2, mitochondrial OS=Arabidopsis thaliana GN=IDH2 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 1.359e-28
Identity = 52/96 (54.17%), Postives = 73/96 (76.04%), Query Frame = 3
Query:   48 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG 335
            F YA  + R++V+A+HKANIM+  DGLFL+ C+EVA+KYP I Y E+++DNCCM LV  P  FDV+V PNLYG+++++  AG+ GG G+ P  N+G
Sbjct:  185 FEYAYLNNRKKVTAVHKANIMKLADGLFLESCQEVAKKYPSIAYNEIIVDNCCMQLVARPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVG 280          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH3G_MOUSE (Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial OS=Mus musculus GN=Idh3g PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.775e-28
Identity = 54/96 (56.25%), Postives = 74/96 (77.08%), Query Frame = 3
Query:   48 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG 335
            F  A+  GR++V+A+HKANIM+  DGLFL+CCREVA  YP+IT++ +++DN  M LV  P  FDV+VMPNLYG+I++++CAGL+GG GL    N G
Sbjct:  205 FKLAQESGRKKVTAVHKANIMKLGDGLFLQCCREVAAHYPQITFDSMIVDNTTMQLVSRPQQFDVMVMPNLYGNIVNNVCAGLVGGPGLVAGANYG 300          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH2_SCHPO (Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial OS=Schizosaccharomyces pombe GN=idh2 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.028e-28
Identity = 54/103 (52.43%), Postives = 77/103 (74.76%), Query Frame = 3
Query:   33 LLNMPFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFD--VLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG 335
            ++   F YA+  G+  ++ +HKA IM+  DGLFL+C +E+A +YP+I   E ++DN C+ +V +P  ++  V+VMPNLYGDI+SD+CAGLIGGLGLTPS NIG
Sbjct:  192 VIRYAFQYARQTGKNNITVVHKATIMRMADGLFLECAKELAPEYPDIELREEILDNACLKIVTDPVPYNNTVMVMPNLYGDIVSDMCAGLIGGLGLTPSGNIG 294          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH3_ARATH (Isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial OS=Arabidopsis thaliana GN=IDH3 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.746e-28
Identity = 53/96 (55.21%), Postives = 72/96 (75.00%), Query Frame = 3
Query:   48 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG 335
            F YA  + R++V+A+HKANIM+  DGLFL+ CREVA+ Y  ITY E+++DNCCM LV  P  FDV+V PNLYG++I++  AG+ GG G+ P  N+G
Sbjct:  186 FEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVAKHYSGITYNEIIVDNCCMQLVAKPEQFDVMVTPNLYGNLIANTAAGIAGGTGVMPGGNVG 281          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH3B_CAEEL (Probable isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Caenorhabditis elegans GN=C37E2.1 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.503e-27
Identity = 54/96 (56.25%), Postives = 73/96 (76.04%), Query Frame = 3
Query:   48 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG 335
            F YA   GR++V+A+HKANIM+  DGLFL+ C  VA++YP+I +E ++IDN CM LV  P  FDV+VMPNLYG+II +L AGL+GG G+ P  ++G
Sbjct:  199 FDYATKTGRKKVTAVHKANIMKLGDGLFLRTCEGVAKQYPKIQFESMIIDNTCMQLVSKPEQFDVMVMPNLYGNIIDNLAAGLVGGAGVVPGQSVG 294          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH1_AJECA (Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial OS=Ajellomyces capsulata GN=IDH1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.235e-22
Identity = 46/96 (47.92%), Postives = 65/96 (67.71%), Query Frame = 3
Query:   48 FHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG 335
            F +A  + R++V+ IHKANIM+  DGLF     +VAE YP +   ++++DN  M  V  P  FDV+VMPNLYG I+S++ A L+GG G+ P CN+G
Sbjct:  206 FSFALANNRKKVTCIHKANIMKLADGLFRSTFHKVAESYPTLETNDMIVDNASMQAVARPQQFDVMVMPNLYGGILSNVGAALVGGPGIVPGCNMG 301          
The following BLAST results are available for this feature:
BLAST of CF504078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 287
Match NameE-valueIdentityDescription
IDH3G_MACFA3.577e-2957.29Isocitrate dehydrogenase [NAD] subunit gamma, mito... [more]
IDH3G_HUMAN3.577e-2957.29Isocitrate dehydrogenase [NAD] subunit gamma, mito... [more]
LEU3_ARCFU4.672e-2959.793-isopropylmalate dehydrogenase OS=Archaeoglobus f... [more]
IDH3G_RAT7.969e-2956.25Isocitrate dehydrogenase [NAD] subunit gamma, mito... [more]
IDH2_ARATH1.359e-2854.17Isocitrate dehydrogenase [NAD] regulatory subunit ... [more]
IDH3G_MOUSE1.775e-2856.25Isocitrate dehydrogenase [NAD] subunit gamma, mito... [more]
IDH2_SCHPO3.028e-2852.43Isocitrate dehydrogenase [NAD] subunit 2, mitochon... [more]
IDH3_ARATH6.746e-2855.21Isocitrate dehydrogenase [NAD] regulatory subunit ... [more]
IDH3B_CAEEL1.503e-2756.25Probable isocitrate dehydrogenase [NAD] subunit be... [more]
IDH1_AJECA4.235e-2247.92Isocitrate dehydrogenase [NAD] subunit 1, mitochon... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-566 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504078 ID=CF504078; Name=CF504078; organism=Citrus sinensis; type=EST; length=363bp
CAAAATCATTACTCGTCAGGCTAGTTTGAGAGTTGCTGAATATGCCGTTT
CACTATGCGAAGACACATGGAAGAGAAAGAGTATCTGCAATACACAAAGC
AAATATTATGCAGAAAACTGATGGGCTTTTTTTGAAGTGTTGTCGTGAGG
TTGCCGAGAAGTACCCTGAGATAACATATGAGGAAGTTGTTATCGACAAT
TGCTGCATGATGCTTGTGAAGAATCCAGCGGCTTTCGATGTGTTGGTAAT
GCCTAACCTCTATGGGGACATCATTAGTGACCTATGTGCTGGGTTGATTG
GTGGATTGGGCTTAACACCTAGTTGCAATATTGGGGAAGGAGGAATTGCC
CTTGCTGAAGCTG
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