CF504078

Overview
NameCF504078
Unique NameCF504078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length363
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8225 contig Csv1_Contig8225:653..1014. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_DEIGD (3-isopropylmalate dehydrogenase OS=Deinococcus geothermalis (strain DSM 11300) GN=leuB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.972e-11
Identity = 33/97 (34.02%), Postives = 63/97 (64.95%), Query Frame = 3
Query:   54 YAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEK-YPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEG 341
            +A    R RV+++ KAN+++ ++ L+ +  + + ++ Y  +      +D+  M++V NP+ +DV++  NL+GDI+SDL A + G LGL PS ++G+G
Sbjct:  171 WAAEQRRGRVTSVDKANVLEVSE-LWRRDVQALRDREYRNVHLNHEYVDSVAMLIVANPSRYDVILTENLFGDILSDLAAVIPGSLGLMPSASLGDG 266          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU31_DECAR (3-isopropylmalate dehydrogenase 1 OS=Dechloromonas aromatica (strain RCB) GN=leuB1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.972e-11
Identity = 32/95 (33.68%), Postives = 57/95 (60.00%), Query Frame = 3
Query:   75 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            +R+ ++ K N+++ T  L+     E++  YP++    +++DN  M LVK P  FDV+V  N++GDI+SD  + L G +G+ PS ++ +    L E
Sbjct:  178 KRLCSVDKMNVLECTQ-LWRDVMIEISRDYPDVELSHMLVDNAAMQLVKAPKQFDVMVTGNMFGDILSDEASMLTGSIGMLPSASLDDKNKGLYE 271          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_PROMM (3-isopropylmalate dehydrogenase OS=Prochlorococcus marinus (strain MIT 9313) GN=leuB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.576e-11
Identity = 34/94 (36.17%), Postives = 55/94 (58.51%), Query Frame = 3
Query:   78 RVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            ++ ++ KAN++  +  L+      +A  Y ++    + +DN  M LV+NP  FDVL+  NL+GDI+SD  A L G +G+ PS ++G  G  L E
Sbjct:  186 KLCSVDKANVLDVSQ-LWRDRVDALAANYGDVELSHMYVDNAAMQLVRNPRQFDVLLTGNLFGDILSDEAAMLTGSIGMLPSASLGSEGPGLFE 278          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: IDH_STRMU (Isocitrate dehydrogenase [NADP] OS=Streptococcus mutans GN=icd PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.576e-11
Identity = 37/118 (31.36%), Postives = 63/118 (53.39%), Query Frame = 3
Query:   33 LLNMPFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY-------PEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIG-EGGIALAEA 362
            L+     YA  +   +V+ +HK NI + T+G F K   E+A++         ++  ++++ DN    ++  P  FDV+ + NL GD  SD  A  +GG+G++P  NI  + G A+ EA
Sbjct:  198 LIRAAIEYALANNLTKVTLVHKGNIQKFTEGGFRKWGYELAKREYAAELASGQLVVDDIIADNFLQQILLKPERFDVVALTNLNGDYASDALAAQVGGIGISPGANINYQTGHAIFEA 315          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_PROMP (3-isopropylmalate dehydrogenase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=leuB PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.364e-11
Identity = 31/95 (32.63%), Postives = 57/95 (60.00%), Query Frame = 3
Query:   75 ERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            +++ ++ K+N+++ +  L+      VA K  ++    + +DN  M LVK+P  FDV++  NL+GDI+SDL A + G +G+ PS ++   G  + E
Sbjct:  185 KKICSVDKSNVLEVSQ-LWRDTVSLVASKENDLALSNMYVDNAAMQLVKDPGQFDVILTSNLFGDILSDLAAMITGSIGMLPSASLSNSGPGVFE 278          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_SYNSC (3-isopropylmalate dehydrogenase OS=Synechococcus sp. (strain CC9605) GN=leuB PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.393e-11
Identity = 35/96 (36.46%), Postives = 55/96 (57.29%), Query Frame = 3
Query:   72 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            R R+ ++ KAN++  +  L+      +A  Y  +    + +DN  M LV++P  FDVL+  NL+GDI+SD  A L G +G+ PS ++G  G  L E
Sbjct:  184 RGRLCSVDKANVLDVSQ-LWRDRVDAMAPSYGPVEVSHMYVDNAAMQLVRDPRQFDVLLTGNLFGDILSDEAAMLTGSIGMLPSASLGSEGPGLFE 278          
BLAST of CF504078 vs. ExPASy Swiss-Prot
Match: LEU3_BRANA (3-isopropylmalate dehydrogenase, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.393e-11
Identity = 30/96 (31.25%), Postives = 58/96 (60.42%), Query Frame = 3
Query:   72 RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKNPAAFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAE 359
            R ++ ++ KAN++  +  L+ +    +A +YP++    + +DN  M LV++P  FD +V  N++GDI+SD  + + G +G+ PS ++ + G  L E
Sbjct:  225 RGKLCSVDKANVLDASI-LWRRRVTALAAEYPDVELSHMYVDNAAMQLVRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLSDSGPGLFE 319          
The following BLAST results are available for this feature:
BLAST of CF504078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 287
Match NameE-valueIdentityDescription
LEU3_DEIGD1.972e-1134.023-isopropylmalate dehydrogenase OS=Deinococcus geo... [more]
LEU31_DECAR1.972e-1133.683-isopropylmalate dehydrogenase 1 OS=Dechloromonas... [more]
LEU3_PROMM2.576e-1136.173-isopropylmalate dehydrogenase OS=Prochlorococcus... [more]
IDH_STRMU2.576e-1131.36Isocitrate dehydrogenase [NADP] OS=Streptococcus m... [more]
LEU3_PROMP3.364e-1132.633-isopropylmalate dehydrogenase OS=Prochlorococcus... [more]
LEU3_SYNSC4.393e-1136.463-isopropylmalate dehydrogenase OS=Synechococcus s... [more]
LEU3_BRANA4.393e-1131.253-isopropylmalate dehydrogenase, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-566 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-13_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504078 ID=CF504078; Name=CF504078; organism=Citrus sinensis; type=EST; length=363bp
CAAAATCATTACTCGTCAGGCTAGTTTGAGAGTTGCTGAATATGCCGTTT
CACTATGCGAAGACACATGGAAGAGAAAGAGTATCTGCAATACACAAAGC
AAATATTATGCAGAAAACTGATGGGCTTTTTTTGAAGTGTTGTCGTGAGG
TTGCCGAGAAGTACCCTGAGATAACATATGAGGAAGTTGTTATCGACAAT
TGCTGCATGATGCTTGTGAAGAATCCAGCGGCTTTCGATGTGTTGGTAAT
GCCTAACCTCTATGGGGACATCATTAGTGACCTATGTGCTGGGTTGATTG
GTGGATTGGGCTTAACACCTAGTTGCAATATTGGGGAAGGAGGAATTGCC
CTTGCTGAAGCTG
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